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1.
Sci Rep ; 14(1): 8385, 2024 Apr 10.
Article in English | MEDLINE | ID: mdl-38600224

ABSTRACT

With the rapid development of national infrastructure projects, there has been a significant increase in intersecting lines in transportation construction. As a result, rotating bridges are increasingly used in engineering projects that span existing railway lines. In order to study the spatial response characteristics and vibration wave transmission mechanisms of the rotating bridge structure under the loading of existing railway trains, field experiments and numerical analyses were conducted. The response characteristics of these bridges were investigated under different types and speeds of adjacent existing lines. A comprehensive methodology has been proposed, integrating the time domain spectrum and the Hilbert-Huang Transform (HHT) energy spectrum for signal processing and vibration analysis. The analysis was carried out using MATLAB 2018a software. This methodology was applied to analyze the test data. The results show that significant resonance phenomenon occurs in the girders of the rotating bridge under the loading of trains on the existing line. The low-frequency component f1 (2-5 Hz) is the primary factor contributing to the amplification of the acceleration response in the rotating bridge, while f3 (10-13 Hz) plays a secondary role. The frequency distribution characteristics of vibration waves caused by train loads on the existing line have a significant influence on the acceleration response of the rotating bridge's girders. The predominant frequency of vibration waves at each measuring point along the transmission path shows a trend of decreasing → increasing → decreasing. The impact on the rotating bridge structure of vibration waves generated by low-speed freight trains on existing railways is greater. The research findings are of great importance for studying the dynamic response of rotating bridges adjacent to existing railway lines.

2.
Nat Commun ; 15(1): 2019, 2024 Mar 06.
Article in English | MEDLINE | ID: mdl-38448482

ABSTRACT

The Drosophila tracheal system is a favorable model for investigating the program of tubular morphogenesis. This system is established in the embryo by post-mitotic cells, but also undergoes remodeling by adult stem cells. Here, we provide a comprehensive cell atlas of Drosophila trachea using the single-cell RNA-sequencing (scRNA-seq) technique. The atlas documents transcriptional profiles of tracheoblasts within the Drosophila airway, delineating 9 major subtypes. Further evidence gained from in silico as well as genetic investigations highlight a set of transcription factors characterized by their capacity to switch cell fate. Notably, the transcription factors Pebbled, Blistered, Knirps, Spalt and Cut are influenced by Notch signaling and determine tracheal cell identity. Moreover, Notch signaling orchestrates transcriptional activities essential for tracheoblast differentiation and responds to protein glycosylation that is induced by high sugar diet. Therefore, our study yields a single-cell transcriptomic atlas of tracheal development and regeneration, and suggests a glycosylation-responsive Notch signaling in cell fate determination.


Subject(s)
Ascomycota , Trachea , Animals , Glycosylation , Drosophila , Cell Differentiation , Transcription Factors
3.
Curr Neurovasc Res ; 2024 Feb 22.
Article in English | MEDLINE | ID: mdl-38409729

ABSTRACT

BACKGROUND: Intracerebral hemorrhage (ICH) is one of the most common subtypes of stroke. OBJECTIVES: This study aimed to investigate the mechanism of Astragaloside IV (AS-IV) on inflammatory injury after ICH. METHODS: The ICH model was established by the injection of collagenase and treated with ASIV (20 mg/kg or 40 mg/kg). The neurological function, water content of the bilateral cerebral hemisphere and cerebellum, and pathological changes in brain tissue were assessed. The levels of interleukin-1 beta (IL-1ß), IL-18, tumor necrosis factor-alpha, interferon-gamma, and IL-10 were detected by enzyme-linked immunosorbent assay. The levels of Kruppel-like factor 2 (KLF2), NOD-like receptor family pyrin domain containing 3 (NLRP3), GSDMD-N, and cleaved-caspase-1 were detected by reverse transcription-quantitative polymerase chain reaction and Western blot assay. The binding relationship between KLF2 and NLRP3 was verified by chromatin-immunoprecipitation and dual-luciferase assays. KLF2 inhibition or NLRP3 overexpression was achieved in mice to observe pathological changes. RESULTS: The decreased neurological function, increased water content, severe pathological damage, and inflammatory response were observed in mice after ICH, with increased levels of NLRP3/GSDMD-N/cleaved-caspase-1/IL-1ß/IL-18 and poorly-expressed KLF2 in brain tissue. After AS-IV treatment, the neurological dysfunction, high brain water content, inflammatory response, and pyroptosis were alleviated, while KLF2 expression was increased. KLF2 bonded to the NLRP3 promoter region and inhibited its transcription. Down-regulation of KLF2 or upregulation of NLRP3 reversed the effect of AS-IV on inhibiting pyroptosis and reducing inflammatory injury in mice after ICH. CONCLUSION: AS-IV inhibited NLRP3-mediated pyroptosis by promoting KLF2 expression and alleviated inflammatory injury in mice after ICH.

4.
Eur J Med Res ; 29(1): 19, 2024 Jan 03.
Article in English | MEDLINE | ID: mdl-38173044

ABSTRACT

BACKGROUND: The biological behavior of low-grade glioma (LGG) is significantly affected by N6-methyladenosine (m6A) methylation, an essential epigenetic alteration. Therefore, it is crucial to create a prognostic model for LGG by utilizing genes that regulate m6A methylation. METHODS: Using TCGA and GTEx databases. We examined m6A modulator levels in LGG and normal tissues, and investigated PD-L1 and PD-1 expression, immune scores, immune cell infiltration, tumor immune microenvironment (TIME) and potential underlying mechanisms in different LGG clusters. We also performed immunohistochemistry and RT-qPCR to identify essential m6A adjustment factor. RESULTS: The results showed that m6A regulatory element expression was significantly increased in LGG tissues and was significantly associated with TMIE. A substantial increase in PD-L1 and PD-1 levels in LGG tissues and high-risk cohorts was observed. PD-L1 expression was positively correlated with FTO, ZCCHC4, and HNRNPD, whereas PD-1 expression was negatively correlated with FTO, ZC3H7B, and HNRNPD. The prognostic signature created using regulators of m6A RNA methylation was shown to be strongly associated with the overall survival of LGG patients, and FTO and ZCCHC4 were confirmed as independent prognostic markers by clinical samples. Furthermore, the results revealed different TIME characteristics between the two groups of patients, indicating disrupted signaling pathways associated with LGG. CONCLUSION: Our results present that the m6A regulators play vital role in regulating PD-L1/PD-1 expression and the infiltration of immune cells, thereby exerting a sizable impact on the TIME of LGG. Therefore, m6A regulators have precise predictive value in the prognosis of LGG.


Subject(s)
B7-H1 Antigen , Glioma , Humans , Prognosis , Programmed Cell Death 1 Receptor , Tumor Microenvironment/genetics , RNA Methylation , Glioma/genetics , Biomarkers, Tumor/genetics , Alpha-Ketoglutarate-Dependent Dioxygenase FTO
5.
Pak J Med Sci ; 39(5): 1512-1516, 2023.
Article in English | MEDLINE | ID: mdl-37680817

ABSTRACT

Objective: To investigate the clinical efficacy and safety of interventional embolization in the treatment of anterior circulation aneurysms. Methods: Eighty patients with anterior circulation aneurysms admitted to People's Hospital of Leshan from June 2019 to December 2021 were retrospectively analyzed. According to the different surgical methods, they were divided into two groups: the observation group and the control group. Patients in the observation group were given interventional embolization, while those in the control group were given craniotomy clipping. The surgical efficacy, postoperative neurological function and quality of life, surgical prognosis and surgical complications of the two groups were compared. Results: The intraoperative blood loss and hospitalization time in the observation group were lower than those in the control group (p<0.05). The scores of the Hunt-Hess and modified Rankin scale in the observation group were significantly lower than those in the control group three months after surgery (p<0.05). The good prognosis rate of the observation group was higher than that of the control group (p<0.05). Moreover, the complication rate of the observation group was 12.50%, which was significantly lower than 32.50% in the control group (p<0.05). Conclusion: Interventional embolization shows the advantages of minimally invasive procedures such as shorter operative times and shorter hospital stays. It has better clinical safety because it can significantly improve the neurological function and quality of life of patients, improve the prognosis of patients, and reduce the incidence of complications.

6.
Biotechnol Genet Eng Rev ; : 1-20, 2023 May 08.
Article in English | MEDLINE | ID: mdl-37154013

ABSTRACT

OBJECTIVE: To investigate the potential mechanism of arachidonic acid deoxyribozyme 15 (ALOX15) in ferroptosis and inflammation induced by cerebral ischemia reperfusion injury. METHODS: The mice and cell models of cerebral ischemia-reperfusion injury were constructed. Western Blot was used to detect the protein expression levels of ALOX15, glutathione peroxidase (GPX4), hypoxia-inducible factor-2α (HIF-2α), prolyl hydroxylase (PHD) and inflammatory factors (NLRP3, IL-1ß, IL-18) in brain tissues and cells. Cell proliferation activity was detected by CCK-8 method. LDH assay was used to detect the release of lactate dehydrogenase. TTC staining was used to observe cerebral infarction. RESULTS: In cerebral ischemia-reperfusion mice and cell models, the expression of ALOX15 protein was increased, the expression of GPX4, a key marker of ferroptosis was decreased, and silencing of ALOX15 down-regulated the GPX4 expression. HIF-2α expression was down-regulated in animal and cell models of cerebral ischemia reperfusion, and silencing of ALOX15 increased the HIF-2α expression by inhibiting PHD2 expression. Inhibition of ALOX15 expression reduced inflammatory factors levels (NLRP3, IL-1ß, and IL-18) in cerebral ischemia. Inhibitor of PHD2 (IXOC-4) alleviating brain injury and cell death induced by cerebral ischemia reperfusion and stabilize HIF-2α expression in vivo. CONCLUSION: The expression of ALOX15 was up-regulated in cerebral ischemia-reperfusion animals and cells model. Inhibition of ALOX15 up-regulated the GPX4 expression, and promoted HIF-2α expression by inhibiting PHD2, thus alleviating ferroptosis and inflammation caused by cerebral ischemia-reperfusion injury.

7.
Heliyon ; 9(2): e13623, 2023 Feb.
Article in English | MEDLINE | ID: mdl-36879745

ABSTRACT

How patterns are formed to scale with tissue size remains an unresolved problem. Here we investigate embryonic patterns of gap gene expression along the anterior-posterior (AP) axis in Drosophila. We use embryos that greatly differ in length and, importantly, possess distinct length-scaling characteristics of the Bicoid (Bcd) gradient. We systematically analyze the dynamic movements of gap gene expression boundaries in relation to both embryo length and Bcd input as a function of time. We document the process through which such dynamic movements drive both an emergence of a global scaling landscape and evolution of boundary-specific scaling characteristics. We show that, despite initial differences in pattern scaling characteristics that mimic those of Bcd in the anterior, such characteristics of final patterns converge. Our study thus partitions the contributions of Bcd input and regulatory dynamics inherent to the AP patterning network in shaping embryonic pattern's scaling characteristics.

8.
Comput Intell Neurosci ; 2022: 5191758, 2022.
Article in English | MEDLINE | ID: mdl-36337271

ABSTRACT

This paper proposes a new meta-heuristic algorithm, named wild geese migration optimization (GMO) algorithm. It is inspired by the social behavior of wild geese swarming in nature. They maintain a special formation for long-distance migration in small groups for survival and reproduction. The mathematical model is established based on these social behaviors to solve optimization problems. Meanwhile, the performance of the GMO algorithm is tested on the stable benchmark function of CEC2017, and its potential for dealing with practical problems is studied in five engineering design problems and the inverse kinematics solution of robot. The test results show that the GMO algorithm has excellent computational performance compared to other algorithms. The practical application results show that the GMO algorithm has strong applicability, more accurate optimization results, and more competitiveness in challenging problems with unknown search space, compared with well-known algorithms in the literature. The proposal of GMO algorithm enriches the team of swarm intelligence optimization algorithms and also provides a new solution for solving engineering design problems and inverse kinematics of robots.


Subject(s)
Heuristics , Robotics , Animals , Geese , Biomechanical Phenomena , Algorithms
9.
Sci China Life Sci ; 65(11): 2131-2144, 2022 11.
Article in English | MEDLINE | ID: mdl-36057002

ABSTRACT

The evolutionarily conserved Hippo pathway coordinates cell proliferation, differentiation and apoptosis to regulate organ growth and tumorigenesis. Hippo signaling activity is tightly controlled by various upstream signals including growth factors and cell polarity, but the full extent to which the pathway is regulated during development remains to be resolved. Here, we report the identification of Shaggy, the homolog of mammalian Gsk3ß, as a novel regulator of the Hippo pathway in Drosophila. Our results show that Shaggy promotes the expression of Hippo target genes in a manner that is dependent on its kinase activity. Loss of Shaggy leads to Yorkie inhibition and downregulation of Hippo pathway target genes. Mechanistically, Shaggy acts upstream of the Hippo pathway and negatively regulates the abundance of the FERM domain containing adaptor protein Expanded. Our results reveal that Shaggy is functionally required for Crumbs/Slmb-mediated downregulation of Expanded in vivo, providing a potential molecular link between cellular architecture and the Hippo signaling pathway.


Subject(s)
Drosophila , Hippo Signaling Pathway , Animals , Carcinogenesis , Cell Differentiation , Cell Proliferation , Mammals
10.
Antioxidants (Basel) ; 11(7)2022 Jun 27.
Article in English | MEDLINE | ID: mdl-35883750

ABSTRACT

Puerarin was shown to exert anti-oxidative and anti-ferroptosis effects in multiple diseases. The goal of this study was to explore the neuroprotective effect of puerarin on early brain injury (EBI) after subarachnoid hemorrhage (SAH) in rats. A total of 177 adult male Sprague Dawley rats were used. SAH was included via endovascular perforation. Intranasal puerarin or intracerebroventricular dorsomorphin (AMPK inhibitor) and SR18292 (PGC1α inhibitor) were administered. The protein levels of pAMPK, PGC1α, Nrf2, 4HNE, HO1, MDA, ACSL4, GSSG, and iron concentration in the ipsilateral hemisphere were significantly increased, whereas SOD, GPX4, and GSH were decreased at 24 h after SAH. Moreover, puerarin treatment significantly increased the protein levels of pAMPK, PGC1α, Nrf2, HO1, SOD, GPX4, and GSH, but decreased the levels of 4HNE, MDA, ACSL4, GSSG, and iron concentration in the ipsilateral hemisphere at 24 h after SAH. Dorsomorphin or SR18292 partially abolished the beneficial effects of puerarin exerted on neurological dysfunction, oxidative stress injury, and ferroptosis. In conclusion, puerarin improved neurobehavioral impairments and attenuated oxidative-stress-induced brain ferroptosis after SAH in rats. The neuroprotection acted through the activation of the AMPK/PGC1α/Nrf2-signaling pathway. Thus, puerarin may serve as new therapeutics against EBI in SAH patients.

11.
Expert Rev Anticancer Ther ; 22(7): 763-771, 2022 07.
Article in English | MEDLINE | ID: mdl-35612545

ABSTRACT

BACKGROUND: Existing studies have confirmed the accuracy of arterial spin labeling (ASL) in differentiating between primary central nervous system lymphoma (PCNSL) and high-grade glioma (HGG). We aimed to consolidate the existing evidence with a meta-analysis. METHODS: Six literature databases were searched for relevant papers. After assessing the quality of studies, bivariate regression was performed, and the pooled sensitivity (SEN), specificity (SPE), positive likelihood ratio (PLR), negative likelihood ratio (NLR), diagnostic score, diagnostic odds ratio (DOR), and the area under the curve (AUC) of the summary receiver operating characteristic (SROC) curve were calculated, along with the corresponding 95% confidence intervals (CIs). Deeks' test was used to determine risk of publication bias. RESULTS: Ten high-quality studies, comprising 151 patients with PCNSL and 455 with HGG, were included. The pooled SEN was 0.79 (95% CI: 0.72-0.85), pooled SPE was 0.90 (95% CI: 0.84-0.94), pooled PLR was 8.07 (95% CI: 5.01-13.02), pooled NLR was 0.23 (95% CI: 0.17-0.32), pooled diagnostic score was 3.56 (95% CI: 2.94-4.18), and pooled DOR was 35.10 (95% CI: 18.83-65.45). The AUC of SROC was 0.86 (95% CI: 0.83-0.89). No publication bias was found. CONCLUSIONS: ASL demonstrated high diagnostic accuracy in differentiating between PCNSL and HGG.


Subject(s)
Brain Neoplasms , Glioma , Lymphoma , Neuroblastoma , Brain Neoplasms/diagnosis , Brain Neoplasms/pathology , Central Nervous System/pathology , Diagnosis, Differential , Glioma/diagnosis , Glioma/pathology , Humans , Lymphoma/diagnosis , Spin Labels
12.
BMJ Open ; 12(5): e057917, 2022 05 04.
Article in English | MEDLINE | ID: mdl-35508338

ABSTRACT

INTRODUCTION: Seizures are a common complication that leads to neurological deficits and affects outcomes after aneurysmal subarachnoid haemorrhage (aSAH). However, whether to use prophylactic anticonvulsants in patients with aSAH remains controversial. Our study aims to determine whether short-term (7 days) sodium valproate could prevent seizure occurrence and improve neurological function in patients with SAH caused by anterior circulation aneurysm rupture and treated with clipping. METHODS AND ANALYSIS: In this multicentre randomised evaluator-blind placebo-controlled trial, 182 eligible patients with good-grade aSAH planned for surgical clipping will be enrolled from four neurosurgical centres in China. In addition to standard care, patients will be randomly assigned to receive sodium valproate 20 mg/kg daily or matching placebo. After aneurysmal clipping, patients will be followed up at discharge, 90 days and 180 days. The primary outcomes are the incidence of early and late seizures. The secondary outcomes include aSAH-related complications, sodium valproate-related adverse effects, modified Rankin Scale (mRS) (on discharge, at 90 days, 180 days), rate of good outcome (defined as mRS 0-2), all-cause death (at 90 days, 180 days) and Montreal Cognitive Assessment score (at 180 days). All analyses are by intention-to-treat. ETHICS AND DISSEMINATION: This study will be conducted according to the principles of Declaration of Helsinki and good clinical practice guidelines. This trial involves human participants and has been approved by the ethics committee of West China Hospital. Informed consent will be achieved from each included patient and/or their legally authorised representative. Preliminary and final results from this study will be disseminated through manuscript publishing and international congresses presentations. Any protocol amendments will be approved by the ethics committee of West China Hospital and subsequently updated on ChiCTR. TRIAL REGISTRATION NUMBER: ChiCTR.org identifier: ChiCTR2100050161.


Subject(s)
Aneurysm, Ruptured , Subarachnoid Hemorrhage , Humans , Multicenter Studies as Topic , Randomized Controlled Trials as Topic , Seizures/etiology , Seizures/prevention & control , Subarachnoid Hemorrhage/complications , Subarachnoid Hemorrhage/drug therapy , Treatment Outcome , Valproic Acid/therapeutic use
13.
Bioengineered ; 13(3): 7940-7950, 2022 03.
Article in English | MEDLINE | ID: mdl-35291908

ABSTRACT

This study explored the role and potential molecular mechanism of phillyrin in cerebral ischemia/reperfusion (I/R) injury. The rat middle cerebral artery occlusion (MCAO)/R model was constructed, and cerebral infarction volume, brain water content, and neurological score were measured. Neuron morphological structures in brain tissues and primary neuron apoptosis were detected using hematoxylin and eosin (H&E) staining and Hoechst 33258 staining, respectively. In MCAO/R rats, phillyrin markedly reduced cerebral infarction volume, neurological score, and brain water content and inhibited neuron apoptosis. In vitro experiments showed that phillyrin remarkably increased viability and decreased lactate dehydrogenase (LDH) release of H2O2-injured neurons. Moreover, phillyrin remarkably downregulated the proportion of apoptosis-related protein B-associated X (Bax)/B-cell lymphoma protein 2 (Bcl-2) and reduced procaspase-3, phospho-Akt (p-Akt-1), and phosphorylation-mammalian target of rapamycin (p-mTOR) levels in H2O2-injured neurons. Furthermore, phosphatidylinositol-3 kinase (PI3K) inhibitor ZSTK474 weakened the effects of phillyrin on p-mTOR, p-Akt-1, characteristic proteins of autophagy 3-II (LC3-II) and beclin-1 levels, and H2O2-induced neuronal apoptosis and autophagy. Taken together, phillyrin alleviates I/R injury by inhibiting neuronal cell apoptosis and autophagy pathway, which may provide a new treatment strategy for cerebral I/R injury.


Subject(s)
Brain Ischemia , Neuroprotective Agents , Reperfusion Injury , Animals , Apoptosis , Autophagy , Brain Ischemia/drug therapy , Brain Ischemia/metabolism , Glucosides , Hydrogen Peroxide/pharmacology , Infarction, Middle Cerebral Artery/metabolism , Mammals/metabolism , Neurons/metabolism , Neuroprotective Agents/metabolism , Neuroprotective Agents/pharmacology , Oxidative Stress , Proto-Oncogene Proteins c-akt/metabolism , Rats , Reperfusion Injury/metabolism , Signal Transduction , TOR Serine-Threonine Kinases/metabolism , Water/metabolism
14.
Article in English | MEDLINE | ID: mdl-32305913

ABSTRACT

Change detection in airport ground is important for airport security. Due to the particularity of ground environment, e.g. haze and camouflage, airport ground change detection is generally incomplete. If an incomplete detection is used as reference for the detection in subsequent frames, it may result in noticeable detection defects across the frames. In this paper, extended motion diffusion (EMD) is proposed to address the problems. The core idea of the EMD is to design a novel model insensitive to incomplete detection. Firstly the one-to-many correspondence in traditional motion diffusion is extended in the prediction step of EMD to build up correspondence from incomplete detection to intact objects. Prior information, e.g. aircraft motion prior and ground structure prior, is employed in the development of the correspondence. Then based on the correspondence a number of new samples are synthesized and filtered in the identification step of the EMD to compensate possible detection defects. Finally, the reserved samples are collected to train a foreground model, which is used in conjunction with another background model for classification. The proposed method is verified based on the Airport Ground Video Surveillance (AGVS) benchmark. Experimental results show effectiveness of the proposed algorithm in dealing with haze and camouflage.

15.
Methods Mol Biol ; 1863: 19-27, 2018.
Article in English | MEDLINE | ID: mdl-30324590

ABSTRACT

We describe methods for detecting and quantifying the concentration gradient of the morphogenetic protein Bicoid through fluorescent immunostaining in fixed Drosophila embryos. We introduce image-processing steps using MATLAB functions, and discuss how the measured signal intensities can be analyzed to extract quantitative information. The described procedures permit robust detection of the endogenous Bicoid concentration gradient at a cellular resolution.


Subject(s)
Drosophila Proteins/metabolism , Drosophila melanogaster/embryology , Drosophila melanogaster/metabolism , Embryo, Nonmammalian/metabolism , Homeodomain Proteins/metabolism , Image Processing, Computer-Assisted/methods , Morphogenesis , Trans-Activators/metabolism , Animals , Embryo, Nonmammalian/cytology , Female , Spectrometry, Fluorescence
16.
Saudi J Biol Sci ; 25(5): 947-952, 2018 Jul.
Article in English | MEDLINE | ID: mdl-30108445

ABSTRACT

Malignant glioma is the most common and lethal type of primary tumor of the central nervous system. The incidence of glioma is increasing year by year. In recent years, a variety of new treatment methods have emerged, among which gene therapy has become a hotspot. MicroRNAs (miRNAs) are a class of small non-coding single-strand RNAs that negatively regulate gene expression at the post-transcriptional and/or translational level by binding loosely complimentary sequences in the 3' untranslated regions (UTRs) of target mRNAs. Several miRNAs have been reported to modulate glioma progression. This study aimed to determine the function of miR-30b-5p in glioma and its underlying molecular mechanism. miR-30b-5p expression was significantly lower in gliomas than the normal brain tissues. Overexpression of miR-30b-5p was found to significantly inhibit glioma cell proliferation in vitro. Further, MTDH expression was significantly higher in the gliomas compared with the normal brain tissues. In addition, MTDH was validated as direct target of miR-30b-5p. Moreover, cellular proliferation was increased after MTDH overexpression in the glioma cells, which reversed the effects of miR-30b-5p. Taken together, these results reveal miR-30b-5p impacts glioma cell proliferation via direct targeting MTDH and could be a potential novel therapeutic target for the treatment of glioma.

17.
Entropy (Basel) ; 20(5)2018 Apr 25.
Article in English | MEDLINE | ID: mdl-33265406

ABSTRACT

For embedding virtual networks into a large scale substrate network, a massive amount of time is needed to search the resource space even if the scale of the virtual network is small. The complexity of searching the candidate resource will be reduced if candidates in substrate network can be located in a group of particularly matched areas, in which the resource distribution and communication structure of the substrate network exhibit a maximal similarity with the objective virtual network. This work proposes to discover the optimally suitable resource in a substrate network corresponding to the objective virtual network through comparison of their graph entropies. Aiming for this, the substrate network is divided into substructures referring to the importance of nodes in it, and the entropies of these substructures are calculated. The virtual network will be embedded preferentially into the substructure with the closest entropy if the substrate resource satisfies the demand of the virtual network. The experimental results validate that the efficiency of virtual network embedding can be improved through our proposal. Simultaneously, the quality of embedding has been guaranteed without significant degradation.

18.
Mol Med Rep ; 16(6): 9317-9322, 2017 Dec.
Article in English | MEDLINE | ID: mdl-29152664

ABSTRACT

Glioblastoma multiforme (GBM) is defined by the World Health Organization as the most aggressive form of grade IV glioma, characterized by unrestrained cellular proliferation. microRNAs (miRs) serve important roles in the pathogenesis of GBM. However, the function of miR­194­5p in GBM remains unknown. In the present study, the miR­194­5p levels in GBM tissues and cells were evaluated using the reverse transcription­quantitative polymerase chain reaction. Cellular proliferation was tested by MTT analysis. Cellular apoptosis was analyzed by fluorescence­activated cell sorting. The protein level of insulin­like growth factor 1 receptor, the target gene of miR­194­5p, was evaluated by western blotting. The interaction between miR­194­5p and the target gene was confirmed by the dual­luciferase reporter assay. It was demonstrated that miR­194­5p inhibited cell growth and promoted apoptosis. In conclusion, the results of the present study indicated the tumor suppressive role of miR­194­5p.


Subject(s)
Apoptosis/genetics , Cell Proliferation/genetics , Glioblastoma/genetics , MicroRNAs/genetics , Cell Line, Tumor , Female , Gene Expression Regulation, Neoplastic/genetics , Genes, Tumor Suppressor , Glioblastoma/pathology , Humans , Male
19.
Oncol Res ; 25(5): 831-842, 2017 May 24.
Article in English | MEDLINE | ID: mdl-28244851

ABSTRACT

Gliomas are the most common and aggressive type of primary adult brain tumors. Although GGNBP2 has previously been considered to be a tumor suppressor gene, little is known about the association between GGNBP2 and glioma. In this study, we clearly demonstrated that GGNBP2 was downexpressed in glioma tissues, and its downexpression is related to the pathological grade and overall survival of patients with gliomas. Overexpression of GGNBP2 suppressed the proliferation, migration, and invasion of glioma cells. Mechanistically, we demonstrated that the PI3K/Akt and Wnt/ß-catenin signaling pathways were suppressed by GGNBP2 overexpression. In contrast, knockdown of GGNBP2 has precisely the opposite effect. Collectively, these data indicate that GGNBP2 shows tumor suppressive activity in human glioma cells and may stand out as a potential therapeutic target for glioma.


Subject(s)
Glioma/genetics , Tumor Suppressor Proteins/genetics , Adaptor Proteins, Signal Transducing , Cell Line, Tumor , Cell Movement/genetics , Cell Proliferation , Gene Expression , Glioma/pathology , Humans , Phosphatidylinositol 3-Kinases/metabolism , Proto-Oncogene Proteins c-akt/metabolism , Wnt Signaling Pathway
20.
Nat Commun ; 6: 10031, 2015 Dec 08.
Article in English | MEDLINE | ID: mdl-26644070

ABSTRACT

A widely appreciated aspect of developmental robustness is pattern formation in proportion to size. But how such scaling features emerge dynamically remains poorly understood. Here we generate a data set of the expression profiles of six gap genes in Drosophila melanogaster embryos that differ significantly in size. Expression patterns exhibit size-dependent dynamics both spatially and temporally. We uncover a dynamic emergence of under-scaling in the posterior, accompanied by reduced expression levels of gap genes near the middle of large embryos. Simulation results show that a size-dependent Bicoid gradient input can lead to reduced Krüppel expression that can have long-range and dynamic effects on gap gene expression in the posterior. Thus, for emergence of scaled patterns, the entire embryo may be viewed as a single unified dynamic system where maternally derived size-dependent information interpreted locally can be propagated in space and time as governed by the dynamics of a gene regulatory network.


Subject(s)
Drosophila Proteins/genetics , Drosophila melanogaster/genetics , Gene Expression Regulation, Developmental , Gene Regulatory Networks/genetics , RNA, Messenger/metabolism , Animals , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Drosophila Proteins/metabolism , Drosophila melanogaster/embryology , Gene Expression Profiling , Homeodomain Proteins/genetics , Homeodomain Proteins/metabolism , In Situ Hybridization, Fluorescence , Kruppel-Like Transcription Factors/genetics , Kruppel-Like Transcription Factors/metabolism , Molecular Dynamics Simulation , Repressor Proteins/genetics , Repressor Proteins/metabolism , Spatio-Temporal Analysis , Transcription Factors/genetics , Transcription Factors/metabolism
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