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1.
Biology (Basel) ; 11(10)2022 Sep 25.
Article in English | MEDLINE | ID: mdl-36290304

ABSTRACT

Choerospondias (Anacardiaceae), characterized by radially arranged germination pores near the top, is a monotypic genus mainly distributed in subtropical and tropical eastern Asia, while fossil records indicate a wide distribution throughout Eurasia during the Cenozoic. In this study, we reported three-dimensionally preserved Choerospondias endocarps, and the associated compressed leaves from the late Miocene Shengxian Formation in Tiantai, Zhejiang, eastern China. The plant remains were assigned to two new fossil species. The endocarps were identified as Choerospondiastiantaiensis sp. nov., and the leaves were identified as Choerospondias mioaxillaris sp. nov. Based on fossil records and climate fluctuation during the Cenozoic, we conclude that Choerospondias may have originated from Europe in the early Eocene and then spread to Asia along the coast and island chains of the Tethys and Paratethys oceans. The distribution position of the current fossils was adjacent to the northern boundary of the modern distribution of Choerospondias in East Asia, indicating that the distribution pattern of Choerospondias in East Asia likely formed no later than the late Miocene. We reconstructed the late Miocene paleoclimate of eastern Zhejiang by using the method of climate analysis of endemic species (CAES), and then compared it to the data reconstructed in previous studies. The results indicate that the late Miocene climate in eastern Zhejiang was similar to or warmer and more humid than the modern climate in this region.

2.
Biology (Basel) ; 11(9)2022 Sep 07.
Article in English | MEDLINE | ID: mdl-36138805

ABSTRACT

Comptonia (Myricaceae) is well known as a monotypic genus living only in eastern North America; however, fossils show that the genus occurred extensively in the Northern Hemisphere during the Cenozoic. We observed dozens of Comptonia leaf fossils from the early Miocene in Zhuozi, China. The leaf architecture characteristics and epidermal features of the fossil specimens are described in detail here for the first time, and they were assigned to a new species: Comptonia hirsuta. The fruit fossils collected simultaneously from the same layer were assigned to Comptonia tymensis. The global fossil records indicate that the spatial distribution range of Comptonia reached its peak in both the Eocene and Miocene as two warm periods and then gradually decreased in the Oligocene, as well as after the late Miocene, because of the cooling global climate. Furthermore, the Comptonia taxon in East Asia may have migrated from North America via the Bering route in the late Paleocene or Eocene. Plant exchange between western Europe and eastern North America possibly occurred during the Eocene via the Thulean route. Phytogeographic variation in the Comptonia fossils from China also indicates that the reason for the disappearance of Comptonia from China may not only be due to the prolonged cooling and drying after the late Miocene, but also due to its progenitive pattern.

3.
Analyst ; 144(12): 3729-3735, 2019 Jun 21.
Article in English | MEDLINE | ID: mdl-30963147

ABSTRACT

The detection of organophosphorus (OP) compounds, which are extremely toxic, is a requirement in many application fields such as food security. Mass-type chemical sensors based on ultra-sensitive resonant microcantilevers exhibit high comparative advantages in OP compound detection. However, it is still a big challenge to construct a sensing film in situ from corrosive precursors on resonant cantilevers for batch fabrication. In this work, Parylene-C is patterned and a sample reservoir is formed on the free-end of resonant microcantilever for constructing the sensing material directly. Not only utilized for corrosive precursor loading and in situ sensing material construction, the Parylene-C film can also be used to effectively protect the integrated elements from damage by corrosive substances. For extremely toxic OP molecule detection, a typical metal-organic framework (MOF) of UiO-66 film has been regioselectively constructed in situ on the Parylene-C patterned microcantilevers. A limit of detection (LOD) of 5 ppb for the OP simulant dimethyl methylphosphonate (DMMP) is achieved. The in situ MOF construction method manifests satisfactory consistency for sensor batch fabrication. The DMMP sensing mechanism is identified as the specific host-guest interaction between the UiO-66 and OP molecule.

4.
FEMS Microbiol Lett ; 365(5)2018 03 01.
Article in English | MEDLINE | ID: mdl-29319811

ABSTRACT

The Erg28p protein is localized to the endoplasmic reticulum, where it acts as a scaffold to tether the C-4 demethylase complex involved in the sterol biosynthesis pathway of Saccharomyces cerevisiae. However, due to the challenges involved in characterizing the interactions of membrane proteins, the precise region of Erg28p that is responsible for the assembly of this enzyme complex remains unknown. To address this question, mutants with serial truncations in the C-terminus of Erg28p were constructed based on a topology prediction of its transmembrane domain. Sterol profiles demonstrated that intermediates involved in the stepwise removal of the two C-4 methyl groups from the tetracyclic sterol ring were accumulated in the ERG28Δ135-447 strain. Homologous alignment of Erg28p further identified a highly conserved 10-amino acid sequence (63LS/QARTFGT/LWT72) within the truncated region of ERG28Δ136-273. Complementation of the BY4741/erg28 strain with the ScERG28Δ175-204 plasmid resulted both in a significant growth inhibition and a reduction of ergosterol biosynthesis compared with the plasmid without the Δ175-204 truncation. Furthermore, homology modeling of the Erg28p mutant indicated that the deletion of residues 63-72 significantly disrupted the 3D structure of the four parallel helices in Erg28p. Taken together, the data indicate that the region spanning amino acids 63-72 constitutes a key consensus motif within Erg28p that is required for sterol C-4 demethylation during ergosterol biosynthesis in S. cerevisiae.


Subject(s)
Ergosterol/biosynthesis , Membrane Proteins/chemistry , Saccharomyces cerevisiae Proteins/chemistry , Saccharomyces cerevisiae/metabolism , Sterols/metabolism , Amino Acid Motifs , Demethylation , Ergosterol/metabolism , Genetic Complementation Test , Membrane Proteins/genetics , Membrane Proteins/metabolism , Models, Molecular , Multienzyme Complexes/metabolism , Mutation , Protein Structure, Tertiary , Saccharomyces cerevisiae/enzymology , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/growth & development , Saccharomyces cerevisiae Proteins/genetics , Saccharomyces cerevisiae Proteins/metabolism
5.
Rev Sci Instrum ; 79(7): 074301, 2008 Jul.
Article in English | MEDLINE | ID: mdl-18681721

ABSTRACT

This research investigates the air drag damping effect of the micromachined cantilevers in different resonance modes on the quality factor, which are operated in ambient air. Based on a simplified dish-string model for air drag force acting on the resonant cantilever, the air drag damping properties of the cantilevers vibrating in different modes are analyzed with theoretic vibration mechanics, which is complemented and further confirmed with finite-element simulation. Four kinds of integrated cantilevers, which resonate in the first flexural mode, the second flexural mode, the first torsional mode, and the second torsional mode, respectively, are designed and fabricated by using micromachining techniques. Finally, biomolecular sensing experiments are carried out to verify the theoretical results obtained before. From both the modeling and experimental results, it can be seen that damping characteristics of the torsional cantilever resonators are generally better than that of the flexural ones, and quality factor of the cantilever resonator in a higher-frequency mode is always superior to that in a lower-frequency one. Among the four kinds of microcantilever resonators operated in our experiments, the one operated in the second flexural modes exhibits the highest Q factor and the best biomass sensing performance.

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