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1.
Front Microbiol ; 15: 1302907, 2024.
Article in English | MEDLINE | ID: mdl-38827158

ABSTRACT

Background: Sepsis is commonly associated with a sudden impairment of brain function, thus leading to significant rates of illness and mortality. The objective of this research was to integrate microbiome and metabolome to reveal the mechanism of microbiota-hippocampus-metabolites axis dysfunction in a mouse model of sepsis. Methods: A mouse model of sepsis was established via cecal ligation and puncture. The potential associations between the composition of the gut microbiota and metabolites in the hippocampus of mice with sepsis were investigated by combining 16S ribosomal RNA gene sequencing and ultra-high-performance liquid chromatography tandem mass spectrometry. Results: A total of 140 differential metabolites were identified in the hippocampal tissues of mice with sepsis when compared to those of control mice. These differential metabolites in mice with sepsis were not only associated with autophagy and serotonergic synapse, but also involved in the metabolism and synthesis of numerous amino acids. At the phylum level, the abundance of Bacteroidota was increased, while that of Firmicutes (Bacillota) was decreased in mice with sepsis. At the genus level, the abundance of Alistipes was increased, while that of Lachnospiraceae_NK4A136_group was decreased in mice with sepsis. The Firmicutes (Bacillota)/Bacteroidota (F/B) ratio was decreased in mice with sepsis when compared to that of control mice. Furthermore, the F/B ratio was positively correlated with 5'-methylthioadenosine, PC (18:3(9Z,12Z,15Z)/18:0) and curdione, and negatively correlated with indoxylsulfuric acid, corticosterone, kynurenine and ornithine. Conclusion: Analysis revealed a reduction in the F/B ratio in mice with sepsis, thus contributing to the disturbance of 5'-methylthioadenosine, curdione, PC (18:3(9Z,12Z,15Z)/18:0), corticosterone, ornithine, indoxylsulfuric acid and kynurenine; eventually, these changes led to hippocampus dysfunction. Our findings provide a new direction for the management of sepsis-induced hippocampus dysfunction.

2.
Anal Chim Acta ; 1308: 342614, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38740455

ABSTRACT

Metal-organic frameworks (MOFs) have been used to detect uric acid (UA), but still very challenging to achieve a low detection limit due to the low inferior conductivity of MOFs. Herein, three different N-doped ZIF-67-derived carbons were synthesized for the first time by one-step co-pyrolysis of 2-methylimidazole with cobalt nitrate (CN), cobalt acetate (CA) or cobalt chloride (CC) toward UA sensing. Afterwards, the cobalt nitrate-derived Co particle (Co/CN) supported by N-doped ZIF-67-derived carbon displays extremely low detection limit and high sensitivity for UA, outperformed all reported MOFs-based UA sensors. More interestingly, it was discovered that the high valence Co4+ within the Co/CN sample produced in high-acidic environment can intercalate in the frame for a bridge adsorption between two reaction sites, which boosted simultaneous 2-electron transfer, while Co3+ only allows an end-adsorption structure for one-electron transfer being the rate determining step. Furthermore, the bridge adsorption mode of UA on Co4+ -based catalyst was also verified by theoretical DFT calculations and XPS experiment. This work holds great promise for a selective and sensitive UA sensor for practical bioscience and clinic diagnostic applications while shedding lights in fundamental research for innovative designs and developments of high-sensitive electrochemical sensors.

3.
Int J Biol Sci ; 20(7): 2698-2726, 2024.
Article in English | MEDLINE | ID: mdl-38725864

ABSTRACT

Pancreatic cancer is a malignancy with high mortality. In addition to the few symptoms until the disease reaches an advanced stage, the high fatality rate is attributed to its rapid development, drug resistance and lack of appropriate treatment. In the selection and research of therapeutic drugs, gemcitabine is the first-line drug for pancreatic cancer. Solving the problem of gemcitabine resistance in pancreatic cancer will contribute to the progress of pancreatic cancer treatment. Long non coding RNAs (lncRNAs), which are RNA transcripts longer than 200 nucleotides, play vital roles in cellular physiological metabolic activities. Currently, our group and others have found that some lncRNAs are aberrantly expressed in pancreatic cancer cells, which can regulate the process of cancer through autophagy and Wnt/ß-catenin pathways simultaneously and affect the sensitivity of cancer cells to therapeutic drugs. This review presents an overview of the recent evidence concerning the node of lncRNA for the cross-talk between autophagy and Wnt/ß-catenin signaling in pancreatic cancer, together with the practicability of lncRNAs and the core regulatory factors as targets in therapeutic resistance.


Subject(s)
Autophagy , Drug Resistance, Neoplasm , Pancreatic Neoplasms , RNA, Long Noncoding , Wnt Signaling Pathway , RNA, Long Noncoding/metabolism , RNA, Long Noncoding/genetics , Humans , Autophagy/drug effects , Pancreatic Neoplasms/metabolism , Pancreatic Neoplasms/drug therapy , Pancreatic Neoplasms/genetics , Drug Resistance, Neoplasm/genetics , Animals
4.
Eur J Med Res ; 29(1): 302, 2024 May 29.
Article in English | MEDLINE | ID: mdl-38811952

ABSTRACT

BACKGROUND: The basic helix-loop-helix family member e41 (BHLHE41) is frequently dysregulated in tumors and plays a crucial role in malignant progression of various cancers. Nevertheless, its specific function and underlying mechanism in bladder cancer (BCa) remain largely unexplored. METHODS: The expression levels of BHLHE41 in BCa tissues and cells were examined by qRT-PCR and western blot assays. BCa cells stably knocking down or overexpressing BHLHE41 were constructed through lentivirus infection. The changes of cell proliferation, cell cycle distribution, migration, and invasion were detected by CCK-8, flow cytometry, wound healing, transwell invasion assays, respectively. The expression levels of related proteins were detected by western blot assay. The interaction between BHLHE41 and PYCR1 was explored by co-immunoprecipitation analysis. RESULTS: In this study, we found that BHLHE41 was lowly expressed in bladder cancer tissues and cell lines, and lower expression of BHLHE41 was associated with poor overall survival in bladder cancer patients. Functionally, by manipulating the expression of BHLHE41, we demonstrated that overexpression of BHLHE41 significantly retarded cell proliferation, migration, invasion, and induced cell cycle arrest in bladder cancer through various in vitro and in vivo experiments, while silence of BHLHE41 caused the opposite effect. Mechanistically, we showed that BHLHE41 directly interacted with PYCR1, decreased its stability and resulted in the ubiquitination and degradation of PYCR1, thus inactivating PI3K/AKT signaling pathway. Rescue experiments showed that the effects induced by BHLHE41 overexpression could be attenuated by further upregulating PYCR1. CONCLUSION: BHLHE41 might be a useful prognostic biomarker and a tumor suppressor in bladder cancer. The BHLHE41/PYCR1/PI3K/AKT axis might be a potential therapeutic target for bladder cancer intervention.


Subject(s)
Cell Proliferation , Phosphatidylinositol 3-Kinases , Proto-Oncogene Proteins c-akt , Pyrroline Carboxylate Reductases , Signal Transduction , Urinary Bladder Neoplasms , delta-1-Pyrroline-5-Carboxylate Reductase , Urinary Bladder Neoplasms/pathology , Urinary Bladder Neoplasms/metabolism , Urinary Bladder Neoplasms/genetics , Humans , Phosphatidylinositol 3-Kinases/metabolism , Proto-Oncogene Proteins c-akt/metabolism , Pyrroline Carboxylate Reductases/metabolism , Pyrroline Carboxylate Reductases/genetics , Basic Helix-Loop-Helix Transcription Factors/metabolism , Basic Helix-Loop-Helix Transcription Factors/genetics , Cell Movement/genetics , Disease Progression , Gene Expression Regulation, Neoplastic , Cell Line, Tumor , Mice , Animals , Male
5.
J Agric Food Chem ; 72(22): 12618-12629, 2024 Jun 05.
Article in English | MEDLINE | ID: mdl-38778776

ABSTRACT

Microbial nitrogen fixation presents a viable alternative to chemical fertilizers, yet the limited colonization and specificity of naturally occurring nitrogen-fixing microorganisms present significant challenges to their widespread application. In this study, we identified a nitrogen fixation gene cluster (VNnif) in Vibrio natriegens (VN) and tested its nitrogenase activity through the acetylene reduction assay. We investigated the potential utilization of nitrogenase by incorporating the nitrogenase gene cluster from VN into plant growth-promoting rhizosphere bacteria Pseudomonas protegens CHA0 and enhancing its activity to 48.16 nmol C2H2/mg/h through promoter replacement and cluster rearrangement. The engineered strain CHA0-PVNnif was found to positively impact the growth of Arabidopsis thaliana col-0 and Triticum aestivum L. (wheat). This study expanded the role of plant growth-promoting rhizobacteria (PGPR) and provided a research foundation for enhancing nitrogenase activity.


Subject(s)
Arabidopsis , Bacterial Proteins , Multigene Family , Nitrogen Fixation , Nitrogenase , Triticum , Vibrio , Nitrogenase/metabolism , Nitrogenase/genetics , Nitrogen Fixation/genetics , Vibrio/genetics , Vibrio/growth & development , Vibrio/enzymology , Bacterial Proteins/genetics , Bacterial Proteins/metabolism , Triticum/microbiology , Triticum/genetics , Triticum/growth & development , Triticum/metabolism , Arabidopsis/genetics , Arabidopsis/microbiology , Arabidopsis/enzymology , Arabidopsis/growth & development , Rhizosphere
6.
Sci Rep ; 14(1): 8711, 2024 04 15.
Article in English | MEDLINE | ID: mdl-38622245

ABSTRACT

The etiopathogenesis of severe acute pancreatitis (SAP) remains poorly understood. We aim to investigate the role of immune cells Infiltration Characteristics during SAP progression. Gene expression profiles of the GSE194331 dataset were retrieved from the GEO. Lasso regression and random forest algorithms were employed to select feature genes from genes related to SAP progression and immune responses. CIBERSORT was utilized to estimate differences in immune cell types and proportions and the relationship between immune cells and gene expression. We performed pathway enrichment analysis using GSEA to examine disparities in KEGG signaling pathways when comparing the two groups. Additionally, CMap analysis was executed to identify prospective small molecular compounds. The three hub genes (CBLB, JADE2, RNF144A) were identified that can predict SAP progression. Analysis of CIBERSORT and TISIDB databases has shown that there are significant differences in immune cell expression levels between the normal and SAP groups, and three hub genes (CBLB, JADE2, RNF144A) were highly correlated with multiple immune cells, regulating the characteristics of immune cell infiltration in the microenvironment. Finally, drug prediction through the Connectivity Map database suggested that compounds such as Entecavir, KU-0063794, Y-27632, and Antipyrine have certain effects as potential targeted drugs for the treatment of SAP. CBLB, JADE2, and RNF144A are hub genes in SAP, potentially playing important roles in SAP progression. This finding further broadens the understanding of the etiopathogenesis of SAP and provides a feasible basis for future research on diagnostic and immunotherapeutic targets for SAP.


Subject(s)
Pancreatitis , Humans , Acute Disease , Prospective Studies , Pancreatitis/genetics , Drug Delivery Systems , Computational Biology
7.
Biology (Basel) ; 13(3)2024 Mar 05.
Article in English | MEDLINE | ID: mdl-38534438

ABSTRACT

Transient receptor potential vanilloid-6 (TRPV6) is a cation channel belonging to the TRP superfamily, specifically the vanilloid subfamily, and is the sixth member of this subfamily. Its presence in the body is primarily limited to the skin, ovaries, kidney, testes, and digestive tract epithelium. The body maintains calcium homeostasis using the TRPV6 channel, which has a greater calcium selectivity than the other TRP channels. Several pieces of evidence suggest that it is upregulated in the advanced stages of thyroid, ovarian, breast, colon, and prostate cancers. The function of TRPV6 in regulating calcium signaling in cancer will be covered in this review, along with its potential applications as a cancer treatment target.

8.
Int J Biol Macromol ; 264(Pt 2): 130568, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38447822

ABSTRACT

Polysaccharide based self-healing and injectable hydrogels with reversible characteristics have widespread potential in protein drug delivery. However, it is a challenge to design the dynamic hydrogel for sequential release of protein drugs. Herein, we developed a novel mussel inspired sequential protein delivery dynamic polysaccharide hydrogel. The nanocomposite hydrogel can be fabricated through doping polydopamine nanoparticles (PDA NPs) into reversible covalent bond (imine bonds) crosslinked polymer networks of oxidized hyaluronic acid (OHA) and carboxymethyl chitosan (CEC), named PDA NPs@OHA-l-CEC. Besides multiple capabilities (i.e., injection, self-healing, and biodegradability), the nanocomposite hydrogel can achieve sustained and sequential protein delivery of vascular endothelial growth factor (VEGF) and bovine serum albumin (BSA). PDA NPs doped in hydrogel matrix serve dual roles, acting as secondary protein release structures and form dynamic non-covalent interactions (i.e., hydrogen bonds) with polysaccharides. Moreover, by adjusting the oxidation degree of OHA, the hydrogels with different crosslinking density could control overall protein release rate. Analysis of different release kinetic models revealed that Fickian diffusion drove rapid VEGF release, while the slower BSA release followed a Super Case II transport mechanism. The novel biocompatible system achieved sequential release of protein drugs has potentials in multi-stage synergistic drug deliver based on dynamic hydrogel.


Subject(s)
Chitosan , Vascular Endothelial Growth Factor A , Nanogels , Vascular Endothelial Growth Factor A/chemistry , Drug Delivery Systems , Hydrogels/chemistry , Chitosan/chemistry , Polysaccharides/chemistry , Hyaluronic Acid/chemistry , Serum Albumin, Bovine
9.
Biomed Pharmacother ; 173: 116372, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38432129

ABSTRACT

An increasing number of studies have shown that FAM83A, a member of the family with sequence similarity 83 (FAM83), which consists of eight members, is a key tumor therapeutic target involved in multiple signaling pathways. It has been reported that FAM83A plays essential roles in the regulation of Wnt/ß-catenin, EGFR, MAPK, EMT, and other signaling pathways and physiological processes in models of pancreatic cancer, lung cancer, breast cancer, and other malignant tumors. Moreover, the expression of FAM83A could be significantly affected by multiple noncoding RNAs that are dysregulated in malignant tumors, the dysregulation of which is essential for the malignant process. Among these noncoding RNAs, the most noteworthy is the antisense long noncoding (Lnc) RNA of FAM83A itself (FAM83A-AS1), indicating an outstanding synergistic carcinogenic effect between FAM83A and FAM83A-AS1. In the present study, the specific mechanisms by which FAM83A and FAM83A-AS1 cofunction in the Wnt/ß-catenin and EGFR signaling pathways were reviewed in detail, which will guide subsequent research. We also described the applications of FAM83A and FAM83A-AS1 in tumor therapy and provided a certain theoretical basis for subsequent drug target development and combination therapy strategies.


Subject(s)
Lung Neoplasms , RNA, Long Noncoding , Humans , beta Catenin/genetics , beta Catenin/metabolism , Phosphatidylinositol 3-Kinases/metabolism , Cell Movement/genetics , Lung Neoplasms/pathology , ErbB Receptors/genetics , ErbB Receptors/metabolism , RNA, Long Noncoding/genetics , Wnt Signaling Pathway/genetics , Cell Proliferation/genetics , Gene Expression Regulation, Neoplastic , Cell Line, Tumor , Neoplasm Proteins/metabolism
10.
Sci Adv ; 10(12): eadk8331, 2024 Mar 22.
Article in English | MEDLINE | ID: mdl-38507478

ABSTRACT

Appendage regeneration relies on the formation of blastema, a heterogeneous cellular structure formed at the injury site. However, little is known about the early injury-activated signaling pathways that trigger blastema formation during appendage regeneration. Here, we provide compelling evidence that the extracellular signal-regulated kinase (ERK)-activated casein kinase 2 (CK-2), which has not been previously implicated in appendage regeneration, triggers blastema formation during leg regeneration in the American cockroach, Periplaneta americana. After amputation, CK-2 undergoes rapid activation through ERK-induced phosphorylation within blastema cells. RNAi knockdown of CK-2 severely impairs blastema formation by repressing cell proliferation through down-regulating mitosis-related genes. Evolutionarily, the regenerative role of CK-2 is conserved in zebrafish caudal fin regeneration via promoting blastema cell proliferation. Together, we find and demonstrate that the ERK-activated CK-2 triggers blastema formation in both cockroach and zebrafish, helping explore initiation factors during appendage regeneration.


Subject(s)
Regeneration , Zebrafish , Animals , Zebrafish/metabolism , Regeneration/genetics , Wound Healing , Signal Transduction/genetics , Zebrafish Proteins/genetics , Zebrafish Proteins/metabolism
11.
Phys Chem Chem Phys ; 26(12): 9399-9412, 2024 Mar 20.
Article in English | MEDLINE | ID: mdl-38444367

ABSTRACT

In recent years, polymers have been demonstrated to effectively toughen cementitious materials. However, the mechanism of interaction between the polymers and C-S-H at the nanoscale remains unclear, and the quantitative impact of the polymer chain length on toughening effectiveness is lacking in research. This study employs molecular dynamics techniques to examine the impact of the polyvinyl alcohol (PVA) chain length on the tensile performance and toughening mechanism of C-S-H. The toughening effect in both the X and Z directions exhibits an initial enhancement followed by a decline with increasing chain length. The optimal degrees of polymerization are determined to be 8 and 12 in the X and Z directions, respectively, resulting in an improvement of fracture energy by 146.7% and 29.5%, respectively. During the stretching process along the X and Z axes, the chain length of PVA molecules significantly influences the variation in the number of Ca⋯O bonds in the system, leading to different stress responses. Additionally, PVA molecules form C-O-Si bonds with the silicate layers of C-S-H, bridging the adjacent layers in a left-right or up-down manner. The toughening effect of PVA on C-S-H depends on the behavior of PVA molecules with different chain lengths, and there exists an optimal range of chain length for PVA, enabling it to enhance structural uniformity and adjust its own conformation to absorb strain energy. When the length of PVA molecular chains is too short, it can easily cause stress concentration in the system and its connection with silicates is not significant. Conversely, when the length of PVA molecular chains is too long, the large molecular structure restricts its extension in the defects of C-S-H, and as the stretching progresses, PVA molecules break and form numerous small segments, thereby losing the advantage of the chain length. This study provides a theoretical basis for the ability of polymers to toughen cementitious materials.

12.
J Pathol ; 263(2): 203-216, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38551071

ABSTRACT

Urothelial damage and barrier dysfunction emerge as the foremost mechanisms in Hunner-type interstitial cystitis/bladder pain syndrome (HIC). Although treatments aimed at urothelial regeneration and repair have been employed, their therapeutic effectiveness remains limited due to the inadequate understanding of specific cell types involved in damage and the lack of specific molecular targets within these mechanisms. Therefore, we harnessed single-cell RNA sequencing to elucidate the heterogeneity and developmental trajectory of urothelial cells within HIC bladders. Through reclustering, we identified eight distinct clusters of urothelial cells. There was a significant reduction in UPK3A+ umbrella cells and a simultaneous increase in progenitor-like pluripotent cells (PPCs) within the HIC bladder. Pseudotime analysis of the urothelial cells in the HIC bladder revealed that cells faced challenges in differentiating into UPK3A+ umbrella cells, while PPCs exhibited substantial proliferation to compensate for the loss of UPK3A+ umbrella cells. The urothelium in HIC remains unrepaired, despite the substantial proliferation of PPCs. Thus, we propose that inhibiting the pivotal signaling pathways responsible for the injury to UPK3A+ umbrella cells is paramount for restoring the urothelial barrier and alleviating lower urinary tract symptoms in HIC patients. Subsequently, we identified key molecular pathways (TLR3 and NR2F6) associated with the injury of UPK3A+ umbrella cells in HIC urothelium. Finally, we conducted in vitro and in vivo experiments to confirm the potential of the TLR3-NR2F6 axis as a promising therapeutic target for HIC. These findings hold the potential to inhibit urothelial injury, providing promising clues for early diagnosis and functional bladder self-repair strategies for HIC patients. © 2024 The Pathological Society of Great Britain and Ireland.


Subject(s)
Cystitis, Interstitial , Toll-Like Receptor 3 , Urothelium , Animals , Female , Humans , Mice , Cell Differentiation , Cell Proliferation , Cystitis, Interstitial/pathology , Cystitis, Interstitial/metabolism , Cystitis, Interstitial/genetics , Mice, Inbred C57BL , Signal Transduction , Single-Cell Analysis , Toll-Like Receptor 3/metabolism , Toll-Like Receptor 3/genetics , Urinary Bladder/pathology , Urinary Bladder/metabolism , Urothelium/pathology , Urothelium/metabolism
13.
Opt Lett ; 49(5): 1273-1276, 2024 Mar 01.
Article in English | MEDLINE | ID: mdl-38426991

ABSTRACT

An optical frequency domain reflectometry (OFDR) shape sensor was demonstrated based on a femtosecond-laser-inscribed weak fiber Bragg grating (WFBG) array in a multicore fiber (MCF). A WFBG array consisting of 60 identical WFBGs was successfully inscribed in each core along a 60 cm long MCF using the femtosecond-laser point-by-point technology, where the length and space of each WFBG were 2 and 8 mm, respectively. The strain distribution of each core in two-dimensional (2D) and three-dimensional (3D) shape sensing was successfully demodulated using the traditional cross correlation algorithm, attributed to the accurate localization of each WFBG. The minimum reconstruction error per unit length of the 2D and 3D shape sensors has been improved to 1.08% and 1.07%, respectively, using the apparent curvature vector method based on the Bishop frame.

14.
Biology (Basel) ; 13(2)2024 Feb 15.
Article in English | MEDLINE | ID: mdl-38392340

ABSTRACT

Ferroptosis is a non-apoptotic mode of cell death driven by membrane lipid peroxidation and is characterized by elevated intracellular levels of Fe2+, ROS, and lipid peroxidation. Studies have shown that ferroptosis is related to the development of multiple diseases, such as cancer, neurodegenerative diseases, and acute myeloid leukemia. Ferroptosis plays a dual role in the occurrence and development of these diseases. Ferroptosis mainly involves iron metabolism, ROS, and lipid metabolism. Various mechanisms, including epigenetic regulation, have been reported to be deeply involved in ferroptosis. Abnormal epigenetic modifications have been reported to promote tumor onset or other diseases and resistance to chemotherapy drugs. In recent years, diversified studies have shown that epigenetic modification is involved in ferroptosis. In this review, we reviewed the current resistance system of ferroptosis and the research progress of epigenetic modification, such as DNA methylation, RNA methylation, non-coding RNAs, and histone modification in cancer and other diseases by regulating ferroptosis.

15.
Adv Biol (Weinh) ; 8(5): e2300117, 2024 May.
Article in English | MEDLINE | ID: mdl-38379270

ABSTRACT

The incidence of Hepatocellular carcinoma (HCC) and HCC-related deaths have remarkably increased over the recent decades. It has been reported that ß-catenin activation can be frequently observed in HCC cases. This study identified the integrin-linked kinase-associated phosphatase (ILKAP) as a novel ß-catenin-interacting protein. ILKAP is localized both in the nucleus and cytoplasm and regulates the WNT pathway in different ways. First, it is demonstrated that ILKAP activates the WNT pathway in HCC cells by increasing the protein level of ß-catenin and other proteins associated with the WNT signaling, such as c-Myc and CyclinD1. Next, it is shown that ILKAP promotes the metastasis of HCC both in vitro and in vivo in a zebrafish xenograft model. It is also found that ILKAP dephosphorylates the GSK3ß and CK1, contributing to the reduced ubiquitination of ß-catenin. Furthermore, it is identified that ILKAP functions by mediating binding between TCF4 and ß-catenin to enhance expression of WNT target genes. Taken together, the study demonstrates a critical function of ILKAP in metastasis of HCC, since ILKAP is crucial for the activation of the WNT pathway via stabilization of ß-catenin and increased binding between TCF4 and ß-catenin.


Subject(s)
Carcinoma, Hepatocellular , Liver Neoplasms , Phosphoprotein Phosphatases , Wnt Signaling Pathway , beta Catenin , Animals , Humans , beta Catenin/metabolism , Carcinoma, Hepatocellular/pathology , Carcinoma, Hepatocellular/metabolism , Cell Line, Tumor , Gene Expression Regulation, Neoplastic , Liver Neoplasms/pathology , Liver Neoplasms/metabolism , Neoplasm Metastasis , Transcription Factor 4/metabolism , Transcription Factor 4/genetics , Wnt Signaling Pathway/physiology , Zebrafish , Phosphoprotein Phosphatases/genetics , Phosphoprotein Phosphatases/metabolism
16.
Autophagy ; 20(2): 454-456, 2024 02.
Article in English | MEDLINE | ID: mdl-37876308

ABSTRACT

Macroautophagy/autophagy is an essential pro-survival mechanism activated in response to nutrient deficiency. The proper fusion between autophagosomes and lysosomes is a critical step for autophagic degradation. We recently reported that RUNDC1 (RUN domain containing 1) inhibits autolysosome formation via clasping the ATG14-STX17-SNAP29 complex to hinder VAMP8 binding. We showed that RUNDC1 colocalizes with LC3 and associates with mature autophagosomes in cell lines and the zebrafish model. We utilized liposome fusion and in vitro autophagosome-lysosome fusion assays to demonstrate that RUNDC1 inhibits autolysosome formation. Moreover, we found that RUNDC1 clasps the ATG14-STX17-SNAP29 complex via stimulating ATG14 homo-oligomerization to inhibit ATG14 dissociation, which in turn prevents VAMP8 from binding to STX17-SNAP29. Our results demonstrate that RUNDC1 is a negative regulator of autophagy that restricts autophagosome fusion with lysosomes and is crucial for zebrafish survival in nutrient-deficient conditions. Here, we summarize our findings and discuss their implications for our understanding of autophagy regulation.


Subject(s)
Autophagosomes , Autophagy , Animals , Autophagosomes/metabolism , Autophagy/physiology , Zebrafish/metabolism , Transcription Factors/metabolism , Lysosomes/metabolism , Membrane Fusion/physiology , SNARE Proteins/metabolism
17.
J Sci Food Agric ; 104(1): 257-265, 2024 Jan 15.
Article in English | MEDLINE | ID: mdl-37552783

ABSTRACT

BACKGROUND: Phenolic endocrine-disrupting chemicals (EDCs) are widespread and easily ingested through the food chain. They pose a serious threat to human health. Magnetic solid-phase extraction (MSPE) is an effective sample pre-treatment technology to determine traces of phenolic EDCs. RESULTS: Magnetic covalent organic framework (COF) (Fe3 O4 @COF) nanospheres were prepared and characterized. The efficient and selective extraction of phenolic EDCs relies on a large specific surface and the inherent porosity of COFs and hydrogen bonding, π-π, and hydrophobic interactions between COF shells and phenolic EDCs. Under optimal conditions, the proposed magnetic solid-phase extraction-high-performance liquid chromatography-ultra violet (MSPE-HPLC-UV) based on the metallic covalent organic framework method for phenolic EDCs shows good linearities (0.002-6 µg mL-1 ), with R2 of 0.995 or higher, and low limits of detection (6-1.200 ng mL-1 ). CONCLUSION: Magnetic covalent organic frameworks (Fe3 O4 @COFs) with good MSPE performance for phenolic EDCs were synthesized by the solvothermal method. The magnetic covalent organic framework-based MSPE-HPLC-UV method was applied successfully to determine phenolic EDCs in beverage and water samples with satisfactory recoveries (90.200%-123%) and relative standard deviations (2.100%-12.100%). © 2023 Society of Chemical Industry.


Subject(s)
Endocrine Disruptors , Metal-Organic Frameworks , Humans , Metal-Organic Frameworks/chemistry , Chromatography, High Pressure Liquid , Beverages , Solid Phase Extraction/methods , Phenols , Magnetic Phenomena , Water/chemistry , Limit of Detection
18.
Toxins (Basel) ; 15(11)2023 10 25.
Article in English | MEDLINE | ID: mdl-37999490

ABSTRACT

The T-2 toxin (T2) poses a major threat to the health and productivity of animals. The present study aimed to investigate the regulatory mechanism of Nrf2 derived from broilers against T2-induced oxidative damage. DF-1 cells, including those with normal characteristics, as well as those overexpressing or with a knockout of specific components, were exposed to a 24 h treatment of 50 nM T2. The primary objective was to evaluate the indicators associated with oxidative stress and the expression of downstream antioxidant factors regulated by the Nrf2-ARE signaling pathway, at both the mRNA and protein levels. The findings of this study demonstrated a noteworthy relationship between the up-regulation of the Nrf2 protein and a considerable reduction in the oxidative stress levels within DF-1 cells (p < 0.05). Furthermore, this up-regulation was associated with a notable increase in the mRNA and protein levels of antioxidant factors downstream of the Nrf2-ARE signaling pathway (p < 0.05). Conversely, the down-regulation of the Nrf2 protein was linked to a marked elevation in oxidative stress levels in DF-1 cells (p < 0.05). Additionally, this down-regulation resulted in a significant decrease in both the mRNA and protein expression of antioxidant factors (p < 0.05). This experiment lays a theoretical foundation for investigating the detrimental impacts of T2 on broiler chickens. It also establishes a research framework for employing the Nrf2 protein in broiler chicken production and breeding. Moreover, it introduces novel insights for the prospective management of oxidative stress-related ailments in the livestock and poultry industry.


Subject(s)
Antioxidants , T-2 Toxin , Animals , Antioxidants/pharmacology , Antioxidants/metabolism , Chickens/metabolism , NF-E2-Related Factor 2/genetics , NF-E2-Related Factor 2/metabolism , T-2 Toxin/toxicity , T-2 Toxin/metabolism , Prospective Studies , Oxidative Stress , Signal Transduction , Cell Line , Fibroblasts/metabolism , RNA, Messenger/metabolism
19.
Article in English | MEDLINE | ID: mdl-37903037

ABSTRACT

In the decade, artificial intelligence has achieved great popularity and applications in medicine and healthcare. Various AI-based algorithms have shown astonishing performance. However, in various data-driven smart healthcare algorithms, the problem of incomplete dataset remains a huge challenge. In this paper, we propose a data completeness enhancement algorithm based on generative AI (i.e., GenAI-DAA) to solve the problems of the in-sufficient data for model training, the data imbalance, and the biases of the training samples. We first construct the cognitive field of the generative models and effectively understand the state of incomplete cognition in generative models. Secondly, on this basis, we propose a quest algorithm for abnormal samples in the cognitive field based on local outlier factor. By fine-grained value evaluation, abnormal samples are given more refined attention. Finally, integrating the above process through multiple cognitive adjustments, GenAI-DAA gradually improves the cognitive ability. GenAI-DAA can be summarized as "Quest-→Estimate-→Tune-up". We have conducted extensive experiments to demonstrate the effectiveness of our proposed algorithm, and shown widely applications to some typical data-driven smart healthcare algorithms.

20.
Phys Chem Chem Phys ; 25(35): 24097-24109, 2023 Sep 13.
Article in English | MEDLINE | ID: mdl-37655461

ABSTRACT

Polymers are known to effectively improve the toughness of inorganic matrices; however, the mechanism at the molecular level is still unclear. In this study, we used molecular dynamics simulations to unravel the effects and mechanisms of different molecular chain lengths of polyacrylic acid (PAA) on toughening calcium silicate hydrate (CSH), which is the basic building block of cement-based materials. Our simulation results indicate that an optimal molecular chain length of polymers contributes to the largest toughening effect on the matrix, leading to up to 60.98% increase in fracture energy. During the uniaxial tensile tests along the x-axis and z-axis direction, the configuration evolution of the PAA molecule determines the toughening effect. As the polymer unfolds and its size matches the defects of CSH, the stress distribution of the system becomes more homogeneous, which favors an increase in toughness. Furthermore, based on our simulation results and a mathematical model, we propose a theory of "strain rate/optimal chain length". This theory suggests that the optimal toughening effect can be achieved when the molecular chain length of the organic component is 1.3-1.5 times the largest defect size of the inorganic matrix. This work provides molecular-scale insights into the toughening mechanisms of an organic/inorganic system and may have practical implications for improving the toughness of cement-based materials.

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