Innate Root Exudates Contributed to Contrasting Coping Strategies in Response to Ralstonia solanacearum in Resistant and Susceptible Tomato Cultivars.

Tomato cultivars with contrasting resistance to pathogens regulate root exudates differentially in response to Ralstonia solanacearum attacks. However, strategies using innate root exudates against infection remain unknown. This study analyzed the innate root exudates of two tomato cultivars and their functions in regulating R. solanacearum infection. The innate root exudates differed between the two cultivars. Astaxanthin released from resistant plants inhibited colonization by R. solanacearum but promoted motility, while neferine released from susceptible plants suppressed motility and colonization. The secretion of astaxanthin in resistant tomatoes promoted the growth of biocontrol fungi in soil and reduced the abundance of pathogenic fungi. Neferine secreted by the susceptible cultivar inhibited the relative abundance of the bacterial-biocontrol-related Bacillus genus, indirectly reducing the soil's immune capacity. This study revealed contrasting strategies using root exudates in resistant and susceptible tomato cultivars to cope with R. solanacearum infection, providing a basis for breeding disease-resistant cultivars.

Genomic Insights and Functional Analysis Reveal Plant Growth Promotion Traits of Paenibacillus mucilaginosus G78.

Paenibacillus mucilaginosus has widely been reported as a plant growth-promoting rhizobacteria (PGPR). However, the important genomic insights into plant growth promotion in this species remain undescribed. In this study, the genome of P. mucilaginosus G78 was sequenced using Illumina NovaSeq PE150. It contains 8,576,872 bp with a GC content of 58.5%, and was taxonomically characterized. Additionally, a total of 7337 genes with 143 tRNAs, 41 rRNAs, and 5 ncRNAs were identified. This strain can prohibit the growth of the plant pathogen, but also has the capability to form biofilm, solubilize phosphate, and produce IAA. Twenty-six gene clusters encoding secondary metabolites were identified, and the genotypic characterization indirectly proved its resistant ability to ampicillin, bacitracin, polymyxin and chloramphenicol. The putative exopolysaccharide biosynthesis and biofilm formation gene clusters were explored. According to the genetic features, the potential monosaccharides of its exopolysaccharides for P. mucilaginosus G78 may include glucose, mannose, galactose, fucose, that can probably be acetylated and pyruvated. Conservation of the pelADEFG compared with other 40 Paenibacillus species suggests that Pel may be specific biofilm matrix component in P. mucilaginosus. Several genes relevant to plant growth-promoting traits, i.e., IAA production and phosphate solubilization are well conserved compared with other 40 other Paenibacillus strains. The current study can benefit for understanding the plant growth-promoting traits of P. mucilaginosus as well as its potential application in agriculture as PGPR.

Pre-sowing seed treatment with kinetin and calcium mitigates salt induced inhibition of seed germination and seedling growth of choysum (Brassica rapa var. parachinensis).

In recent years, improving plants' resistance towards abiotic stresses with exogenous application of plant growth regulators and nutrients has emerged as a matter of great interest. The present study assessed the potential roles of kinetin (Kn, 0.2 mM) and calcium (Ca, 2 mM) in mitigating the salt (200 mM NaCl) induced inhibitory effects on seed germination and growth of choysum seedlings. The results indicated that NaCl stress significantly reduced the seed germination percentage (42.6%), germination potential (42.0%), germination index (52.1%), seedling vigor index (65.2%), and declined the fresh weight (43.8%), dry weight (52.2%), radicle length (37.2%), and plumule length (41.2%) of germinated seeds, compared to control treatment. The delayed germination and decrease in seedling growth were positively correlated with salinity-induced hormonal imbalance, ion toxicity, and oxidative stress. However, Kn and Ca pretreatment partially mitigated the adverse effects of NaCl stress, evident by early germination and enhanced seedling growth. Kn and Ca effectively increased the accumulation of proline, soluble protein, and soluble sugars, and upregulated the activities of superoxide dismutase, peroxidase, catalase, and ascorbate peroxidase that significantly reduced the production of malondialdehyde, hydrogen peroxide, and superoxide anions in germinating seeds, thereby minimizing the NaCl-induced oxidative damages. Moreover, Kn and Ca pretreatment counteracted the NaCl-induced ionic toxicity by decreasing Na+ and increasing K+ contents and maintained a balanced Na+/K+ ratio in radicles and plumules of choysum seeds. Additionally, Kn and Ca under NaCl stress enhanced hormonal regulation by decreasing the ABA levels with a concomitant increase of GAs (especially GA4) levels and promoted early germination. Remarkably, the co-application of Kn and Ca was most effective by completely counteracting the inhibitory effects of NaCl and maintaining seed germination kinetics, seedling growth, and biochemical parameters almost similar to that in the stress-free control treatment. These results demonstrate that supplementation of Kn and Ca on choysum seeds is an effective chemical strategy regulating the various physiological and biochemical responses that would result in better germination and growth of seeds under stress conditions.

Jasmonic acid-mediated enhanced regulation of oxidative, glyoxalase defense system and reduced chromium uptake contributes to alleviation of chromium (VI) toxicity in choysum (Brassica parachinensis L.).

The cultivation of leafy vegetables on metal contaminated soil embodies a serious threat to yield and quality. In the present study, the potential role of exogenous jasmonic acid (JA; 0, 5, 10, and 20 µM) on mitigating chromium toxicity (Cr; 0, 150, and 300 µM) was investigated in choysum (Brassica parachinensis L.). With exposure to increasing Cr stress levels, a dose-dependent decline in growth, photosynthesis, and physio-biochemical attributes of choysum plants was observed. An increase in Cr levels also resulted in oxidative stress closely associated with higher lipoxygenase activity (LOX), hydrogen peroxide (H2O2) generation, lipid peroxidation (MDA), and methylglyoxal (MG) levels. Exogenous application of JA alleviated the Cr-induced phytotoxic effects on photosynthetic pigments, gas exchange parameters, and restored growth of choysum plants. While exposed to Cr stress, JA supplementation induced plant defense system via enhanced regulation of antioxidant enzymes, ascorbate and glutathione pool, and the glyoxalase system enzymes. The coordinated regulation of antioxidant and glyoxalase systems expressively suppressed the oxidative and carbonyl stress at both Cr stress levels. More importantly, JA restored the mineral nutrient contents, restricted Cr uptake, and accumulation in roots and shoots of choysum plants when compared to the only Cr-stressed plants. Overall, the application of JA2 treatment (10 µM JA) was more effective and counteracted the detrimental effects of 150 µM Cr stress by restoring the growth and physio-biochemical attributes to the level of control plants, while partially mitigated the detrimental effects of 300 µM Cr stress. Hence, JA application might be considered as an effective approach for minimizing Cr uptake and its detrimental effects in choysum plants grown on contaminated soils.

Modulation of growth performance and coordinated induction of ascorbate-glutathione and methylglyoxal detoxification systems by salicylic acid mitigates salt toxicity in choysum (Brassica parachinensis L.).

Salinity represents a serious environmental threat to crop production and by extension, to world food supply, social and economic prosperity of the developing world. Salicylic acid (SA) is an endogenous plant signal molecule involved in regulating various plant responses to stress. In the present study, we characterized the regulatory role of exogenous SA for their ability to ameliorate deleterious effects of salt stress (0, 100, 150, 200 mM NaCl) in choysum plants through coordinated induction of antioxidants, ascorbate glutathione (AsA-GSH) cycle, and the glyoxalase enzymes. An increase in salt stress dramatically declined root and shoot growth, leaf chlorophyll and relative water content (RWC), subsequently increased electrolyte leakage (EL) and osmolytes accumulation in choysum plants. Salt stress disrupted the antioxidant and glyoxalase defense systems which persuaded oxidative damages and carbonyl toxicity, indicated by increased H2O2 generation, lipid peroxidation, and methylglyoxal (MG) content. However, application of SA had an additive effect on the growth of salt-affected choysum plants, which enhanced root length, plant biomass, chlorophyll contents, leaf area, and RWC. Moreover, SA application effectively eliminated the oxidative and carbonyl stress by improving AsA and GSH pool, upregulating the activities of antioxidant enzymes and the enzymes associated with AsA-GSH cycle and glyoxalase system. Overall, SA application completely counteracted the salinity-induced deleterious effects of 100 and 150 mM NaCl and partially mediated that of 200 mM NaCl stress. Therefore, we concluded that SA application induced tolerance to salinity stress in choysum plants due to the synchronized increase in activities of enzymatic and non-enzymatic antioxidants, enhanced efficiency of AsA-GSH cycle and the MG detoxification systems.

Effects of sulphur and Thiobacillus thioparus 1904 on nitrogen cycle genes during chicken manure aerobic composting.

Severe nitrogen (N) loss is a barrier for composting treatment. Since N transformation during composting is closely related to nitrogen loss, the impacts of adding sulphur and Thiobacillus thioparus 1904 to N transformation during composting were investigated in this work. Physicochemical properties and the expression of genes encoding N-related proteins were analysed to evaluate microbiological processes associated with N dynamics. The results indicated that (1) sulphur addition reduced the pH and cumulative NH3 emission, and decreased N losses by 44.23%, while no significant differences were observed in the expression of N cycle-associated genes compared with the control treatment; (2) the application of T. thioparus 1904 increased NO3--N content, reduced N loss by 28.20%, and significantly enhanced the expression of ammonia monooxygenase A (archaeal amoA; AOA) and nitrite oxidoreductase A (nxrA) during the mature phase; (3) the combined application of sulphur and T. thioparus 1904 significantly affected the expression of functional genes related to nitrification and denitrification, which contributed to a reduction in accumulated NH3 emission, an increase in NO4+-N content, and a decrease in N losses by 70.94%. Expression of ammonia monooxygenase A (bacterial amoA; AOB), nxrA and nitrous oxide reductase Z (nosZ) genes in the combined treatment was positively correlated with NO3--N, whereas expression of AOA and accumulation of NH3 were negatively correlated with NO3--N. These results indicate that the combined application of sulphur and T. thioparus 1904 had a significant regulatory effect on N cycle genes and effectively reduced the N loss during composting.

Effect of Thiobacillus thioparus 1904 and sulphur addition on odour emission during aerobic composting.

The effects of sulphur and Thiobacillus thioparus 1904 on odour emissions during composting were studied. Results indicated that the sulphur addition reduced the pH and decreased cumulative emission of ammonia and the nitrogen loss by 47.80% and 44.23%, respectively, but the amount of volatile sulphur compounds (VSCs) and the sulphur loss increased. The addition of T. thioparus 1904 effectively reduced the cumulative emissions of H2S, methyl sulphide, methanethiol, dimethyl disulphide and the sulphur loss by 33.24%, 81.24%, 32.70%, 54.22% and 54.24%, respectively. T. thioparus 1904 also limited the nitrogen loss. The combined application of sulphur and T. thioparus 1904 resulted in the greatest amount of nitrogen retention. The accumulation of ammonia emissions was reduced by 63.33%, and the nitrogen loss was reduced by 71.93%. The combined treatment did not increase the emission of VSCs. The application of sulphur and T. thioparus 1904 may help to control the odour of compost.

Fungi diversity from different depths and times in chicken manure waste static aerobic composting.

The Dirichlet multinomial mixtures mode was used to analyse illumina sequencing data to reveal both temporal and spatial variations of the fungi community present in the aerobic composting. Results showed that 670 operational taxonomic units (OTUs) were detected, and the dominant phylum was Ascomycota. There were four types of samples fungi communities during the composting process. Samples from the early composting stage were mainly grouped into type I and Saccharomycetales sp. was dominant. Fungi community in the medium composting stage were fallen into type II and III, Sordariales sp. and Acremonium alcalophilum, Saccharomycetales sp. and Scedosporium minutisporum were the dominant OTUs respectively. Samples from the late composting stage were mainly grouped into type IV and Scedosporium minutisporum was the dominant OTU; Scedosporium minutisporum was significantly affected by depth (P<0.05). Results indicate that time and depth both are factors that influence fungi distribution and variation in c waste during static aerobic composting.

Effects of supplementary composts on microbial communities and rice productivity in cold water paddy fields.

Cold water paddy field soils are relatively unproductive, but can be ameliorated by supplementing with inorganic fertilizer from animal waste-based composts. The yield of two rice cultivars was significantly raised by providing either chicken manure or cow dung-based compost. The application of these composts raised the soil pH as well as both the total nitrogen and ammonium nitrogen content, which improved the soil's fertility and raised its nitrification potential. The composts had a measurable effect on the abundance of nitrogencycling- related soil microbes, as measured by estimating the copy number of various bacterial and archaeal genes using quantitative real-time PCR. The abundance of ammonia oxidizing archaea and bacteria was markedly encouraged by the application of chicken manure-based compost. Supplementation with the composts helped promote the availability of soil nitrogen in the cold water paddy field, thereby improving the soil's productivity and increasing the yield of the rice crop.

Multivariate assessment of polycyclic aromatic hydrocarbons in surface sediments of the Beijiang, a tributary of the Pearl River in Southern China.

To estimate the severity of polycyclic aromatic hydrocarbon (PAH) contamination in the upper sediment of the Beijiang River, 42 sediment samples were analyzed for the presence of 16 key PAHs using gas chromatography-mass spectrometry. The concentrations of PAH in the sediment ranged from 44 to 8,921 ng g(-1) dry weight. The four- to six-ring PAHs, contributing >50% to PAHs in 34 of the 42 sites, were the dominant species. Based on a principal component analysis, combined with multivariate linear regression, it became clear that the most important contributors of PAH were fossil fuel combustion (48%), diesel emissions plus oil spillage (33%), and coke combustion (19%). The surface sediments of Beijiang River were grossly contaminated by PAHs mainly derived from combustion.

Evolution of microbial community diversity and enzymatic activity during composting.

The composting of organic material is dependent on microbial activity. However, the dynamics of the microbial community during the composting process remain obscure. Here, denaturing gradient gel electrophoresis of 16S rDNA amplicons in a chicken manure-based compost was applied to characterize the components of the microbial community during the composting process. In addition, the activity of key microbial enzymes was monitored. Arcobacter spp. and Marinospirillum spp. were the dominant species prior to composting, whereas Thermotogae spp. became more strongly represented as the composting process proceeded. Bacillus and Cohnella spp. were featured at various phases. Correlation analysis showed that the diversity of the microbial community was positively correlated with the compost pH, its total nitrogen level, its carbon-to-nitrogen ratio and the activity of protease, and negatively correlated with its organic carbon content and seed germination indices.

[Screening of two straw-cellulose degrading actinomycetes].

OBJECTIVE: The aim of this study was to screen microorganisms that could degrade rice straw. METHODS: We used selective medium to screen strains and determined straw fracture tension strength, weight loss, lignocellulose decomposition rate and extracellular enzyme activity as re-screening methods after 10 days shake flask culture. RESULTS: We isolated two antinomycetes (A3 and A6), the highest cellulose enzyme activity of holoenzyme, beta3-Glucosidase, endonuclease and exonclease for A3 were 12.84, 6.23, 24.56 and 14.00 U/mL, and for A6 12.85, 6.53, 17.80 and 18.80 U/mL. The hemicelluloses enzyme activity was 83.05 for A3 and 52.98 U/mL for A6. Both strains belonged to Streptomyces. With 10 days' treatment, inoculated straws showed a decrease of straw fracture tension strength by 62.67% (A3) and 66.67% (A6), while weight loss of straw was 31.50% (A3) and 35.83% (A6). A3's decomposition rate of cellulose, hemicellulose and lignin was 38.73% , 33.16% and 20.68% , and 47.69% , 28.64% and 22.59% for A6. CONCLUSION: Antinomycetes A3 and A6 could degrad cellulose, hemicellulose and lignin.

The addition of modified attapulgite reduces the emission of nitrous oxide and ammonia from aerobically composted chicken manure.

UNLABELLED: The acceleration of the composting process and the improvement of compost quality have been explored by evaluating the efficacy of various additives, inoculating with specific microorganisms and the application of various biosurfactants. The magnesium-aluminum silicate attapulgite is a low-cost potential composting additive, but its effects on aerobic composting are unknown. This study investigated the effects of attapulgite application on compost production and quality during the aerobic composting of chicken manure. Addition of attapulgite significantly increased the temperature (p < 0.05) while it reduced compost total organic carbon (TOC) and seed germination indices (GIs) throughout the process. Its addition enhanced nitrate concentrations, promoted organic matter degradation, increased seed germination indices, and accelerated the composting process. Interestingly, attapulgite addition did not increase the population of ammonia-oxidizing bacteria. These results suggest that attapulgite is a good additive for the composting industry. IMPLICATIONS: We investigated the addition of two forms of attapulgite during aerobic composting of chicken manure to determine their effects under strict composting environmental parameter control. Our results provides primary evidence that attapulgite may have potential for application in the composting industry. All treatments showed no increase within the first 15 days. However, emissions increased for all treatments within 15-45 days, reaching approximately 6300, 2000, and 4000 mg/m2 from the control, artifactitious attapulgite, and raw attapulgite treatments, respectively.

Improved composting of poultry feces via supplementation with ammonia oxidizing archaea.

Ammonia-oxidizing archaea (AOA) play an important role in the oxidation of ammonia. However, the participation of AOA in the composting process has not been established. The addition of AOA to a compost mix was able to speed up both the onset of the hyperthermic phase and the composting time. The composition of the microflora and the relative abundance were determined by using denaturing gradient gel electrophoresis and quantitative real-time PCR, based on the presence of the archaeal amoA genes. The amplicon profiles allowed some of the major AOA species present in the final compost to be identified, and their relative abundance to be estimated from their amplification intensity. The lower pH during the lower temperature phase of compost served to enhance the nitrogen content of the final compost. The addition of AOA resulted in the expanding diversity of microflora species than that of the natural colonization.

[Screening and identification of hemicellulose degrading microorganisms in acid soil].

OBJECTIVE: The aim of this study was to screen hemicellulose degrading microorganisms. METHODS: The methods used to screen the effective strains included hydrolysis spot diameter measurement of hemicellulose plate and extracellular enzyme activity. The methods used to identify the strains included culture characteristics, morphological, physiological-biochemical characteristics and molecular biological methods. RESULTS: We isolated 4 actinomycetes (NA9, NA10, NA12 and NA13), 2 fungi (NF1 and NF7) with hemicellulose degrading ability and no antagonistic effect among them. The hemicellulose degrading activity of 4 actinomyces (NA9, NA10, NA12 and NA13) was 217.6, 229.8, 221.1 and 211.8 U/mL. The hemicellulose degrading activity of 2 fungi (NF1 and NF7) was 217.7 and 244.2 U/mL. The hemicellulose degrading activity of complex microbial system was 299.0 U/mL. NA9, NA10, NA12 and NA13 were Streptomyces costaricanus; NF1 was Aspergillus candidus and NF7 was Tarlaromyces flavus. CONCLUSION: the 4 actinomyces and 2 fungi screened have high hemicelluloses enzyme activity. These strains have good application value and more research value.

Preparation of a modified flue gas desulphurization residue and its effect on pot sorghum growth and acidic soil amelioration.

A modified flue gas desulphurization residue (MFGDR) was prepared and its effects on sorghum growth and acidic soil amelioration were evaluated in this paper. The MFGDR was prepared by calcining a mixture of dry/semi-dry flue gas desulphurization (FGD) residue from a coal-fired power plant, sorted potash feldspar and/or limestone powder. The available nutrients from the MFGDR were determined with 4.91 wt% K(+), 1.15 wt% Mg(2+), 22.4 wt% Ca(2+), 7.01 wt% Si(4+) and 2.07 wt% SO(4)(2-)-S in 0.1 mol L(-1) citric acid solution. Its pH value was held at 9.60 displaying slightly alkaline. The results of sorghum pot growth in both red and crimson acidic soil for 30 days indicated that adding the MFGDR at a dosage of 2 g kg(-1) in total soil weight would increase the growth rate of biomass by 24.3-149% (wet weight basis) and 47.3-157% (dry weight), the stem length and thickness increase by 5.75-22.1% and 4.76-30.9% in contrast with CK treatment for two test cuttings, respectively. The effect on sorghum growth was attributed to the increase of available nutrients, the enhancement of soil pH value and the reduction of aluminum toxicity in acidic soil due to the addition of the MFGDR. The experimental results also suggested that the MFGDR could be effectively used to ameliorate the acidic soil which is widely distributed throughout the southern China.

Effects of sulphur and Thiobacillus thioparus on cow manure aerobic composting.

A simulated aerobic composting experiment was used to explore the effects of sulphur and Thiobacillus thioparus during six manure composting treatments. The addition of sulphur led to a decrease of the pH level within the range 6-6.3, which was lower than the control treatment (CK). The concentration of ammonium nitrogen in T1 (0.25% sulphur), T2 (0.5% sulphur), T3 (0.25% sulphur + T. thioparus) and T4 (0.5% sulphur + T. thioparus) were much higher than the ammonium N in CK. The results indicated that addition of sulphur could increase the concentration of ammonium N and reduce loss of nitrogen. However, excess sulphur had a negative effect on temperature and GI. Addition of T. thioparus could increase concentration of available S, alleviate these negative influences and reduce compost biological toxicity.

Effects of alkyl polyglycoside (APG) on composting of agricultural wastes.

Composting is the biological degradation and transformation of organic materials under controlled conditions to promote aerobic decomposition. To find effective ways to accelerate composting and improve compost quality, numerous methods including additive addition, inoculation of microorganisms, and the use of biosurfactants have been explored. Studies have shown that biosurfactant addition provides more favorable conditions for microorganism growth, thereby accelerating the composting process. However, biosurfactants have limited applications because they are expensive and their use in composting and microbial fertilizers is prohibited. Meanwhile, alkyl polyglycoside (APG) is considered a "green" surfactant. This study aims to determine whether APG addition into a compost reaction vessel during 28-day composting can enhance the organic matter degradation and composting process of dairy manure. Samples were periodically taken from different reactor depths at 0, 3, 5, 7, 14, 21, and 28 days. pH levels, electrical conductivity (EC), ammonium and nitrate nitrogen, seed germination indices, and microbial population were determined. Organic matter and total nitrogen were also measured. Compared with the untreated control, the sample with APG exhibited slightly increased microbial populations, such as bacteria, fungi, and actinomycetes. APG addition increased temperatures without substantially affecting compost pH and EC throughout the process. After 28 days, APG addition increased nitrate nitrogen concentrations, promoted matter degradation, and increased seed germination indices. The results of this study suggest that the addition of APG provides more favorable conditions for microorganism growth, slightly enhancing organic matter decomposition and accelerating the composting process, improving the compost quality to a certain extent.

[Effects of microbial agent inoculation on bacterial community diversity in the process of pig manure composting].

PCR-DGGE method was adopted to study the effects of inoculating exogenous microbial agent on the bacterial community diversity in the process of fresh pig manure high-temperature aerobic composting. Exogenous microbial agent inoculation promoted the composting process, with the high-temperature period being advanced by 2 days than that of non-inoculation. DGGE pattern analysis showed that during composting, the dominant bacteria changed significantly, with the Shannon-Wiener index of bacterial community at different composting periods varied obviously. The sequencing of DGGE-distinguished bands showed that Clostridium stercorarium subsp. thermolacticum sp. was the dominant group in the whole composting process. Uncultured bacteria Bacillus coagulans sp. and Clostridium thermocellum sp. became the main groups on the 10th and 16th day after microbial agent inoculation, while uncultured Firmicutes sp. and delta proteobacterium became the dominant groups on the 5th and 16th days in the treatment non-inoculation, respectively. Un-dominant group Ureibacillus thermosphaericu sp. and uncultured Silvimonas sp. appeared in the late period of well rotted composting, while uncultured soil bacteria mainly appeared in the initial and high-temperature periods. UPGMC cluster analysis showed that exogenous microbial agent inoculation obviously affected the bacterial community structure in different composting periods, and the main component analysis of DGGE patterns in composting process showed that the bacterial community was mainly affected by the exogenous microbial agent inoculation.