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1.
Proc Natl Acad Sci U S A ; 121(23): e2403557121, 2024 Jun 04.
Article in English | MEDLINE | ID: mdl-38809709

ABSTRACT

The Asian water tower (AWT) serves as the source of 10 major Asian river systems and supports the lives of ~2 billion people. Obtaining reliable precipitation data over the AWT is a prerequisite for understanding the water cycle within this pivotal region. Here, we quantitatively reveal that the "observed" precipitation over the AWT is considerably underestimated in view of observational evidence from three water cycle components, namely, evapotranspiration, runoff, and accumulated snow. We found that three paradoxes appear if the so-called observed precipitation is corrected, namely, actual evapotranspiration exceeding precipitation, unrealistically high runoff coefficients, and accumulated snow water equivalent exceeding contemporaneous precipitation. We then explain the cause of precipitation underestimation from instrumental error caused by wind-induced gauge undercatch and the representativeness error caused by sparse-uneven gauge density and the complexity of local surface conditions. These findings require us to rethink previous results concerning the water cycle, prompting the study to discuss potential solutions.

2.
Diabetes Metab Syndr Obes ; 16: 3871-3883, 2023.
Article in English | MEDLINE | ID: mdl-38054037

ABSTRACT

Background and Objective: Evidence suggests that cardiometabolic index (CMI) has been identified as a novel obesity-related index associated with diabetes, hypertension, and cardiovascular disease. Current evidence suggests that the differences in sex hormones and regional fat distribution in both sexes are directly correlated with metabolic dysfunction-associated fatty liver disease (MAFLD) risk. This study aimed to investigate the diagnostic value of CMI in MAFLD in both sexes. Methods: This retrospective study included 6107 subjects who underwent annual health check-ups from March 2021 to January 2022. CMI was calculated by multiplying the ratio of triglycerides and high-density lipoprotein cholesterol (TG/HDL-C) by waist-to-height ratio (WHtR). Multivariable logistic regression analysis and restricted cubic spline were used to investigate the association of CMI and MAFLD risk. Receiver operating characteristic curve analysis was conducted for the exploration of the diagnostic accuracies of obesity-related indicators. Areas under the curves (AUCs) with 95% CIs were calculated. Results: Prevalence of MAFLD increased with elevated quartiles of CMI in both sexes. The median (IQR) age was 46.00 (18.00) years. Multivariate logistic regression analyses showed that higher CMI was independently associated with MAFLD, in which every additional standard deviation (SD) of CMI increased the risk of MAFLD (OR=2.72, 95% CI:2.35-3.15 for males; OR=3.26, 95% CI:2.36-4.51 for females). Subjects in the fourth quartile of CMI had the highest odds of MAFLD for males (OR=15.82, 95% CI:11.84-21.14) and females (OR=22.60, 95% CI:9.52-53.65)(all P for trend<0.001). Besides, CMI had a non-linearity association with MAFLD (all P for non-linearity<0.001). Furthermore, CMI exhibited the largest AUC compared to other obesity-related indexes in terms of discriminating MAFLD in males (AUC=0.796, 95% CI:0.782-0.810) and females (AUC=0.853, 95% CI:0.834-0.872). Conclusion: CMI was a convenient indicator for the screening of MAFLD among Chinese adults. Females with high CMI had a better diagnostic value for MAFLD than males.

3.
Sci Total Environ ; 871: 161972, 2023 May 01.
Article in English | MEDLINE | ID: mdl-36739011

ABSTRACT

In recent decades, 210Pb has been extensively used as a powerful dating and sedimentation rate-determining tool for sediments deposited over the past ~150 years. However, the conditional assumptions underlying this application have not been explicitly validated, and are always challenged by multiple factors. Here, we synthesize all the possible factors that may limit the accuracy of 210Pb as a geochronometer and bring together related evidence from observations, measurements, and sediment records. It was demonstrated that by affecting the initial 210Pb activity and challenging closed deposition system, particle affinity preference, physical/biological mixing, sedimentation events, and 210Pb post-depositional mobility are the four main contributors to its compromising accuracy. By systematically deepening the knowledge of the 210Pb dating method, this study highlights the necessity of testing the assumption before using it, provides a framework for interpreting non-steady-state accumulation profiles from various sediments, and identifies future research opportunities for chronology improvement and 210Pb application development.

4.
J Environ Radioact ; 255: 107016, 2022 Dec.
Article in English | MEDLINE | ID: mdl-36181743

ABSTRACT

Major nuclear bomb tests and nuclear power plant incidents release large amounts of radionuclides. This study investigates beta (ß) activities of radionuclides from four ice cores in the Third Pole (TP) to understand the transport routes and related atmospheric processes affecting the radionuclides deposition in glaciers of the region. All the ice cores show three major ß activity peaks in the ice layers corresponding to 1963, 1986, and 2011. The ß activity peak in the 1963 ice layer is referred to as the well-known 1962 Nuclear Bomb Test. Beta activity peaks in 1986 and 2011 ice layers from the Chernobyl and Fukushima Nuclear Incidents (CNI, FNI). Hysplit forward and backward trajectory analyses suggest that the radionuclides were transported by the westerly into the stratosphere and then to the high elevation TP glaciers. In the FNI case, the radionuclides traveled over Japan, the Pacific Ocean, Europe, and central Asia before being deposited in the TP glaciers. Investigations of the atmospheric circulation confirm that the stronger northern branch of westerly is responsible for high radionuclides during the FNI in the TP. Less precipitation with water vapor flux component divergence after the FNI also contributed to the enriched radionuclides.


Subject(s)
Radiation Monitoring , Ice Cover , Cesium Radioisotopes/analysis , Japan , Pacific Ocean
5.
Nat Commun ; 13(1): 4371, 2022 07 28.
Article in English | MEDLINE | ID: mdl-35902582

ABSTRACT

Stable isotope paleoaltimetry that reconstructs paleoelevation requires stable isotope (δD or δ18O) values to follow the altitude effect. Some studies found that the δD or δ18O values of surface isotopic carriers in some regions increase with increasing altitude, which is defined as an "inverse altitude effect" (IAE). The IAE directly contradicts the basic theory of stable isotope paleoaltimetry. However, the causes of the IAE remain unclear. Here, we explore the mechanisms of the IAE from an atmospheric circulation perspective using δD in water vapor on a global scale. We find that two processes cause the IAE: (1) the supply of moisture with higher isotopic values from distant source regions, and (2) intense lateral mixing between the lower and mid-troposphere along the moisture transport pathway. Therefore, we caution that the influences of those two processes need careful consideration for different mountain uplift stages before using stable isotope palaeoaltimetry.


Subject(s)
Altitude , Dissent and Disputes , Oxygen Isotopes/analysis
7.
Isotopes Environ Health Stud ; 58(3): 229-246, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35503680

ABSTRACT

Serving as a medium between source water and cellulose, leaf water contributes to the isotope ratios (δ18O, δ2H) of plant organic matter, which can be used for paleoclimate reconstruction. This study is the first to examine the diurnal variations in the δ18O and δ2H of leaf water on the southern Tibetan Plateau. The δ18O and δ2H of leaf water were relatively low when precipitation events occurred. In particular, 18O and 2H of leaf water became extremely depleted 5 h after the precipitation event. Our findings demonstrate that precipitation can modify the isotope ratios of leaf water from external and internal causes. First, precipitation events affect meteorological elements, lead to decreases in leaf transpiration, and immediately weaken the isotope enrichment of leaf water ('rapid effect' of precipitation). Second, precipitation events affect the internal plant-soil water cycle process, causing the plant to preferentially use deeper soil water, and the corresponding isotope ratios of leaf water exhibit extremely low values 5 h after precipitation events ('delay effect' of precipitation). This study suggests that researchers need to be cautious in separating the signals of precipitation and hydrological processes when interpreting isotope records preserved in tree-ring cellulose archives from the Tibetan Plateau.


Subject(s)
Plant Leaves , Water , Cellulose , Oxygen Isotopes/analysis , Plant Leaves/chemistry , Soil , Tibet , Water/analysis
8.
Front Microbiol ; 13: 844432, 2022.
Article in English | MEDLINE | ID: mdl-35237252

ABSTRACT

Nutrient enrichment caused by black carbon (BC) is a major ecological crisis in glacial ecosystems. The microbiological effects of BC were assessed in this study by using fluorescent fingerprinting assay based on flow cytometry (FCM) of bacterial communities with low (LNA) and high (HNA) nucleic acid-content bacteria. Here, we investigated a high-resolution temporal variation of bacterial abundance and LNA/HNA ratio in Tibetan ice cores. Our results revealed that bacterial abundance was proportional to the atmospheric BC on the glaciers. The shift of LNA functional groups to HNA functional groups in glaciers suggested BC emissions increased the proportion of highly active cells. In addition, distinct number of LNA and HNA functional groups was identified between the monsoon and non-monsoon seasons. Westerly winds with high amounts of BC accounted for high ratio of HNA functional groups during the non-monsoon season. In comparison, high moisture during the monsoon season decreased atmospheric BC loading, which increases the ratio of LNA functional groups. Correlations between BC and functional groups were very strong, showing that two functional groups may serve as early-warning indicators of microbiological effects of BC at low trophic level. Our approach provides a potential early-warning framework to study the influences of atmospheric BC on the glaciological community.

9.
Microbiome ; 9(1): 136, 2021 06 12.
Article in English | MEDLINE | ID: mdl-34118971

ABSTRACT

BACKGROUND: Microorganisms drive critical global biogeochemical cycles and dominate the biomass in Earth's expansive cold biosphere. Determining the genomic traits that enable psychrophiles to grow in cold environments informs about their physiology and adaptive responses. However, defining important genomic traits of psychrophiles has proven difficult, with the ability to extrapolate genomic knowledge to environmental relevance proving even more difficult. RESULTS: Here we examined the bacterial genus Arthrobacter and, assisted by genome sequences of new Tibetan Plateau isolates, defined a new clade, Group C, that represents isolates from polar and alpine environments. Group C had a superior ability to grow at -1°C and possessed genome G+C content, amino acid composition, predicted protein stability, and functional capacities (e.g., sulfur metabolism and mycothiol biosynthesis) that distinguished it from non-polar or alpine Group A Arthrobacter. Interrogation of nearly 1000 metagenomes identified an over-representation of Group C in Canadian permafrost communities from a simulated spring-thaw experiment, indicative of niche adaptation, and an under-representation of Group A in all polar and alpine samples, indicative of a general response to environmental temperature. CONCLUSION: The findings illustrate a capacity to define genomic markers of specific taxa that potentially have value for environmental monitoring of cold environments, including environmental change arising from anthropogenic impact. More broadly, the study illustrates the challenges involved in extrapolating from genomic and physiological data to an environmental setting. Video Abstract.


Subject(s)
Arthrobacter , Arthrobacter/genetics , Canada , Genomics , Metagenome , Metagenomics
11.
Front Microbiol ; 11: 1530, 2020.
Article in English | MEDLINE | ID: mdl-32765445

ABSTRACT

Glacier is the dominant cold habitat in terrestrial environments, providing a model ecosystem to explore extremophilic strategies and study early lives on Earth. The dominant form of life in glaciers is bacteria. However, little is known about past evolutionary processes that bacteria underwent during adaptation to the cryosphere and the connection of their genomic traits to environmental stressors. Aiming to test the hypothesis that bacterial genomic content and dynamics are driven by glacial environmental stressors, we compared genomes of 21 psychrophilic Cryobacterium strains, including 14 that we isolated from three Tibetan ice cores, to their mesophilic counterparts from the same family Microbacteriaceae of Actinobacteria. The results show that psychrophilic Cryobacterium underwent more dynamic changes in genome content, and their genomes have a significantly higher number of genes involved in stress response, motility, and chemotaxis than their mesophilic counterparts (P < 0.05). The phylogenetic birth-and-death model imposed on the phylogenomic tree indicates a vast surge in recent common ancestor of psychrophilic Cryobacterium (gained the greatest number of genes by 1,168) after the division of the mesophilic strain Cryobacterium mesophilum. The expansion in genome content brought in key genes primarily of the categories "cofactors, vitamins, prosthetic groups, pigments," "monosaccharides metabolism," and "membrane transport." The amino acid substitution rates of psychrophilic Cryobacterium strains are two orders of magnitude lower than those in mesophilic strains. However, no significantly higher number of cold shock genes was found in psychrophilic Cryobacterium strains, indicating that multi-copy is not a key factor for cold adaptation in the family Microbacteriaceae, although cold shock genes are indispensable for psychrophiles. Extensive gene acquisition and low amino acid substitution rate might be the strategies of psychrophilic Cryobacterium to resist low temperature, oligotrophy, and high UV radiation on glaciers. The exploration of genome evolution and survival strategies of psychrophilic Cryobacterium deepens our understanding of bacterial cold adaptation.

12.
Environ Pollut ; 273: 115778, 2020 Oct 27.
Article in English | MEDLINE | ID: mdl-33460874

ABSTRACT

Black carbon (BC), by the combustion of fossil fuels and biomass, has profound effects on climate change and glacier retreat in industrial eras. In the present study, we report refractory BC (rBC) in an ice core spanning 1850-2014, retrieved from the Hariqin Glacier of the Tanggula Mountains in the central Tibetan Plateau, measured using a single particle soot photometer (SP2). The rBC concentration shows a three-fold increase since the 1950s. The mean rBC concentration was 0.71 ± 0.52 ng mL-1 during 1850s-1940s and 2.11 ± 1.60 ng mL-1 during 1950s-2010s. The substantial increase in rBC since the 1950s is consistent with rBC ice core records from the Tibetan Plateau and Eastern Europe. According to the predominant atmospheric circulation patterns over the glacier and timing of changes in regional emissions, the post-1950 amplification of rBC concentration in the central Tibetan Plateau most likely reflects increases in emissions in Eastern Europe, former USSR, the Middle East, and South Asia. Despite the low-level background rBC concentrations in the ice cores from the Tibetan Plateau, the present study highlights a remarkable increase in anthropogenic BC emissions in recent decades and the consequent influence on glaciers in the Tibetan Plateau.

13.
Rapid Commun Mass Spectrom ; 34(8): e8689, 2020 Apr 30.
Article in English | MEDLINE | ID: mdl-31802558

ABSTRACT

RATIONALE: Measuring δ18 O and δ2 H values in water using wavelength-scanned cavity ring down spectroscopy (WS-CRDS) requires multiple injections of up to six (and sometimes eight or more) of one sample to remove the memory effect, which decreases the sample throughput and increases the consumables cost. Thus, improved methods for removing the memory effect are required. METHODS: We calculated the memory coefficients by sequential WS-CRDS measurement of two lab standard waters with isotopic differences, and used them to establish calibration equations. We then used these equations to correct the measured δ18 O and δ2 H values by removing the memory effect, instead of using multiple injections in the routine daily measurements. RESULTS: By using this method, the number of injections per sample was reduced to one. The reproducibility (one standard deviation) of the δ18 O and δ2 H values obtained for quality control sample was less than 0.05‰ and 0.5‰ for an annual average, respectively. CONCLUSIONS: By measuring the memory coefficients and establishing the calibration equations, a highly effective method was developed for determining the δ18 O and δ2 H values of water, which could significantly improve sample throughput for liquid water dual isotope measurement without sacrificing the precision.

14.
Int J Syst Evol Microbiol ; 69(11): 3519-3523, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31483241

ABSTRACT

A Gram-stain-positive, rod-shaped and motile bacterium with lateral flagellum, designated T3246-1T, was isolated from an ice core, which was drilled from Hariqin Glacier on the Tibetan Plateau, PR China. It grew optimally at 20 °C, pH 7-8 and in the presence of 3 % (w/v) NaCl. The major fatty acid of strain T3246-1T was anteiso-C15 : 0. Major polar lipids were diphosphatidylglycerol, phosphatidylglycerol and phosphatidylinositol. MK-8 was the dominant isoprenoid quinone. The whole-cell sugars were rhamnose, xylose and mannose. The major cell-wall peptidoglycan was lysine. The genomic DNA G+C content of the strain was 71.4 mol%. Results of phylogenetic analysis based on 16S rRNA gene sequences showed that strain T3246-1T formed a lineage within the genus Haloactinobacterium and was closely related to Haloactinobacterium album YIM 93306T with 95.99 % similarity. The average nucleotide identity value between strain T3246-1T and Haloactinobacterium album YIM 93306T was 76.65 %. Based on phenotypic and chemotaxonomic characteristics, strain T3246-1T was considered to represent a novel species of the genus Haloactinobacterium, for which the name Haloactinobacterium glacieicola sp. nov. is proposed. The type strain is T3246-1T (=CGMCC 1.13535T=JCM 32923T).


Subject(s)
Actinobacteria/classification , Ice Cover/microbiology , Phylogeny , Actinobacteria/isolation & purification , Bacterial Typing Techniques , Base Composition , Cell Wall/chemistry , China , DNA, Bacterial/genetics , Fatty Acids/chemistry , Peptidoglycan/chemistry , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistry
15.
Sci Total Environ ; 651(Pt 2): 2059-2067, 2019 Feb 15.
Article in English | MEDLINE | ID: mdl-30321727

ABSTRACT

Climate change-induced glacial melting is a global phenomenon. The effects of climate change-induced melting on the microbial ecology in different glacial-fed aquatic systems have been well illuminated, but the resolution of seasonal dynamics was still limited. Here, we studied bacterial community composition and diversity in a glacial-fed Tibetan lake, Lake Ranwu, to elucidate how glacial-fed aquatic ecosystems respond to the seasonal glacial melting. Obvious seasonal variations of bacterial dominant groups were found in Lake Ranwu and inlet rivers. In April, the majority of OTUs belonged to the Bacteroidetes, Actinobacteria and Proteobacteria. The Proteobacteria increased to the most abundant phylum in July and November, while the Bacteroidetes and Actinobacteria decreased about 50% over seasons. Most key discriminant taxa of each season's community strongly associated with specific environmental variables, suggesting their adaptation to seasonal environments. Bacterial alpha diversity varied among seasons and exhibited strongly negative correlations with conductivity. Conductivity was the major driving force in determining the seasonal variation of bacterial community composition. Fluctuated conductivity was one of the consequences of seasonal melting of glaciers. This study offered evidence for the unique seasonal dynamics pattern of bacterial communities responding to glacial melting. Moreover, this study may provide a reference for assessing the long-term effects of glacial retreat on glacial-fed aquatic ecosystems.


Subject(s)
Bacteria/isolation & purification , Global Warming , Lakes/microbiology , Microbiota , Actinobacteria/classification , Actinobacteria/isolation & purification , Bacteria/classification , Bacteroidetes/classification , Bacteroidetes/isolation & purification , Climate Change , Ice Cover , Proteobacteria/classification , Proteobacteria/isolation & purification , RNA, Bacterial/analysis , RNA, Ribosomal, 16S/analysis , Seasons , Tibet
16.
Extremophiles ; 22(1): 29-38, 2018 Jan.
Article in English | MEDLINE | ID: mdl-29071425

ABSTRACT

It has been suggested that the cryosphere is a new biome uniquely dominated by microorganisms, although the ecological characteristics of these cold-adapted bacteria are not well understood. We investigated the vertical variation with depth of the proportion of pigmented bacteria recovered from an ice core drilled in the Yuzhufeng Glacier, Tibetan Plateau. A total of 25,449 colonies were obtained from 1250 ice core sections. Colonies grew on only one-third of the inoculated Petri dishes, indicating that although the ice core harbored abundant culturable bacteria, bacteria could not be isolated from every section. Four phyla and 19 genera were obtained; Proteobacteria formed the dominant cluster, followed by Actinobacteria, Bacteroidetes and Firmicutes. The proportion of pigmented bacteria increased with depth from 79 to 95% and yellow-colored colonies predominated throughout the ice core, making up 47% of all the colonies. Pigments including α- and ß-carotene, diatoxanthin, peridinin, zea/lutein, butanoyloxy, fucoxanthin and fucoxanthin were detected in representative colonies with α-carotene being the dominant carotenoid. To the best of our knowledge, this is the highest resolution study of culturable bacteria in a deep ice core reported to date.


Subject(s)
Ice Cover/microbiology , Microbiota , Pigmentation , Actinobacteria/isolation & purification , Actinobacteria/metabolism , Bacteroidetes/isolation & purification , Bacteroidetes/metabolism , Carotenoids/metabolism , Firmicutes/isolation & purification , Firmicutes/metabolism , Tibet
17.
Int J Syst Evol Microbiol ; 67(10): 4235-4239, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28920835

ABSTRACT

A Gram-stain-negative, rod-shaped bacterial strain, designed RC4-10-4T, belonging to the genus Erythrobacter, was isolated from the East Rongbuk Glacier on the Tibetan Plateau. Strain RC4-10-4T grew optimally at pH 7.0, at 25 °C and in the presence of 2 % (w/v) NaCl. Summed feature 3 (C16 : 1 ω6c and/or iso-C15 : 0 2-OH), summed feature 8 (C18 : 1 ω7c and/or C18 : 1 ω6c) and C16 : 0 were the major fatty acids. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, sphingoglycolipid and phosphatidylcholine. Carotenoid was detected in the cells. The DNA G+C content of the novel strain was 66.4 mol%. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain RC4-10-4T formed a distinct phylogenetic lineage within the cluster comprising Erythrobacter strains. Similarities between the 16S rRNA gene sequences of strain RC4-10-4T and the closely related strains Erythrobacter luteus KCTC 42179T, Erythrobacter gangjinensis KCTC 22330T, Erythrobacter odishensis KCTC 23981T and Erythrobacter atlanticuls KCTC 42697T were 98.0, 97.6, 97.5 and 97.2 %. The DNA-DNA hybridization values were 37.6, 15.4, 29.8 and 35.8 %, respectively. Based on the phenotypic and phylogenetic characteristics, strain RC4-10-4T represents a novel species of the genus Erythrobacter, for which the name Erythrobacter arachoides sp. nov. is proposed, with the type strain RC4-10-4T (=CGMCC 1.15507T=JCM 31277T).


Subject(s)
Ice Cover/microbiology , Phylogeny , Sphingomonadaceae/classification , Bacterial Typing Techniques , Base Composition , Carotenoids/chemistry , China , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Sphingomonadaceae/genetics , Sphingomonadaceae/isolation & purification
18.
Int J Syst Evol Microbiol ; 67(10): 4121-4125, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28901897

ABSTRACT

A psychrophilic, Gram-stain-negative, rod-shaped, red-pigmented bacterium, designated strain B1789T, was isolated from an ice core of Muztagh Glacier on the Tibetan Plateau in China. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain B1789T was related to members of the genus Hymenobacter and had highest sequence similarity with Hymenobacter antarcticus JCM 17217T (97.9 %). The major menaquinone was MK-7 and the major polar lipid was phosphatidylethanolamine. The predominant fatty acids were iso-C15 : 0, anteiso-C15 : 0 and summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c). The DNA G+C content was 59.4 mol%. In DNA-DNA hybridization tests, strain B1789T shared 42 % relatedness with H. antarcticus JCM 17217T. Based on the results of phenotypic and chemotaxonomic tests, strain B1789T was considered as representing a novel species of the genus Hymenobacter, for which the name Hymenobacter frigidus sp. nov. is proposed. The type strain is B1789T (=JCM 30595T=CGMCC 1.14966T).


Subject(s)
Cytophagaceae/classification , Ice Cover/microbiology , Phylogeny , Bacterial Typing Techniques , Base Composition , China , Cytophagaceae/genetics , Cytophagaceae/isolation & purification , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Phosphatidylethanolamines/chemistry , Pigmentation , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Vitamin K 2/analogs & derivatives , Vitamin K 2/chemistry
19.
Int J Syst Evol Microbiol ; 67(10): 4075-4079, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28901899

ABSTRACT

A Gram-stain-negative, rod-shaped, bacterial strain, B448-2T, was isolated from an ice core from the Muztagh Glacier, on the Tibetan Plateau. B448-2T grew optimally at pH 7.0 and 20 °C in the presence of 0-1.0 % (w/v) NaCl. The results of 16S rRNA gene sequence similarity analysis indicated that B448-2T was closely related to Massilia eurypsychrophila CGMCC 1.12828T, Rugamonas rubra CCM3730T and Duganella zoogloeoides JCM20729T at levels of 97.8, 97.7  and 97.3 %, respectively. The predominant fatty acids of B448-2T were summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c) and C16 : 0. The predominant isoprenoid quinone was Q-8. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. The genomic DNA G+C content of the strain was 66.1 mol%. In DNA-DNA hybridization tests, B448-2T shared 37.6 % DNA-DNA relatedness with Massilia eurypsychrophila CGMCC 1.12828T. On the basis of the results for phenotypic and chemotaxonomic characteristics, B448-2T was considered to represent a novel species of the genus Massilia, for which the name Massiliaglaciei sp. nov. is proposed. The type strain is B448-2T (=JCM 30271T=CGMCC 1.12920T).


Subject(s)
Ice Cover/microbiology , Oxalobacteraceae/classification , Phylogeny , Bacterial Typing Techniques , Base Composition , China , DNA, Bacterial/genetics , Fatty Acids/chemistry , Nucleic Acid Hybridization , Oxalobacteraceae/genetics , Oxalobacteraceae/isolation & purification , Phospholipids/chemistry , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Ubiquinone/chemistry
20.
FEMS Microbiol Ecol ; 93(7)2017 07 01.
Article in English | MEDLINE | ID: mdl-28854676

ABSTRACT

It is widely accepted that bacterial community composition and diversity in remote alpine lakes are structured by environmental conditions such as nutrient status and temperature. However, the mechanisms that underlie and structure bacterial community composition and diversity in alpine lakes remain unclear. We used 16S rRNA gene-based Illumina MiSeq sequencing to investigate the complex ecological interactions between bacterial communities and nutrient status in Kalakuli Lake, an alpine glacial-fed lake in Muztagh Ata of the westernmost Tibetan Plateau. Our results indicated that the bacterial community was dominated by the Actinobacteria and Proteobacteria. The results of threshold estimates showed that there were apparent shifts in dominance from the Proteobacteria to Actinobacteria groups associated with increasing carbon to nitrogen (C:N) ratio, and the change points were 6.794 and 2.448, respectively. Using multiple statistical methods, we found that the abiotic factors of dissolved organic carbon and total nitrogen had substantial impacts on bacterial diversity, while bacterial community compositions were significantly correlated with both the biotic element of bacterial abundance and the abiotic ones, temperature and pH. These findings demonstrated that the C:N ratio played a significant role in shifting dominant bacterial assemblages in the Kalakuli watershed and provided evidence of nutrients affecting bacterial community composition and diversity. We argue that this study could further shed light on how climate change-induced glacial retreat may impact bacterial communities in glacial-fed lakes under future global warming scenarios.


Subject(s)
Actinobacteria/classification , Biodiversity , Lakes/microbiology , Microbiota/genetics , Proteobacteria/classification , Actinobacteria/genetics , Actinobacteria/isolation & purification , Base Sequence , Carbon/chemistry , Climate Change , Nitrogen/chemistry , Proteobacteria/genetics , Proteobacteria/isolation & purification , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA , Tibet
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