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1.
Int J Biol Sci ; 20(9): 3393-3411, 2024.
Article in English | MEDLINE | ID: mdl-38993566

ABSTRACT

Chronic prostatitis is one of the most common urologic diseases that troubles young men, with unclear etiology and ineffective treatment approach. Pyroptosis is a novel model of cell death, and its roles in chronic prostatitis are unknown. In this study, P2X7R, NEK7, and GSDMD-NT expression levels were detected in prostate tissues from benign prostate hyperplasia (BPH) patients and experiment autoimmune prostatitis (EAP) mice. P2X7R agonist, antagonist, NLRP3 inhibitor, and disulfiram were used to explore the roles of the P2X7R-NEK7-NLRP3 axis in prostate epithelial cell pyroptosis and chronic prostatitis development. We found that P2X7R, NEK7, and GSDMD-NT were highly expressed in the prostate epithelial cells of BPH patients with prostatic inflammation and EAP mice. Activation of P2X7R exacerbated prostatic inflammation and increased NLRP3 inflammasome component expressions and T helper 17 (Th17) cell proportion. Moreover, P2X7R-mediated potassium efflux promoted NEK7-NLRP3 interaction, and NLRP3 assembly and activation, which caused GSDMD-NT-mediated prostate epithelial cell pyroptosis to exacerbate EAP development. Disulfiram could effectively improve EAP by inhibiting GSDMD-NT-mediated prostate epithelial cell pyroptosis. In conclusion, the P2X7R-NEK7-NLRP3 axis could promote GSDMD-NT-mediated prostate epithelial cell pyroptosis and chronic prostatitis development, and disulfiram may be an effective drug to treat chronic prostatitis.


Subject(s)
Epithelial Cells , NIMA-Related Kinases , NLR Family, Pyrin Domain-Containing 3 Protein , Phosphate-Binding Proteins , Prostate , Prostatitis , Pyroptosis , Male , Animals , Prostatitis/metabolism , NLR Family, Pyrin Domain-Containing 3 Protein/metabolism , NIMA-Related Kinases/metabolism , Pyroptosis/drug effects , Mice , Epithelial Cells/metabolism , Humans , Phosphate-Binding Proteins/metabolism , Prostate/metabolism , Mice, Inbred C57BL , Receptors, Purinergic P2X7/metabolism , Poly-ADP-Ribose Binding Proteins/metabolism , Autoimmune Diseases/metabolism , Gasdermins
2.
Mol Ecol Resour ; 20(2): 591-604, 2020 Mar.
Article in English | MEDLINE | ID: mdl-31628884

ABSTRACT

EnTAP (Eukaryotic Non-Model Transcriptome Annotation Pipeline) was designed to improve the accuracy, speed, and flexibility of functional gene annotation for de novo assembled transcriptomes in non-model eukaryotes. This software package addresses the fragmentation and related assembly issues that result in inflated transcript estimates and poor annotation rates of protein-coding transcripts. Following filters applied through assessment of true expression and frame selection, open-source tools are leveraged to functionally annotate the reduced set of translated proteins. Downstream features include fast similarity search across five repositories, protein domain assignment, orthologous gene family assessment, and Gene Ontology (GO) term assignment. The final annotation integrates across multiple databases and selects an optimal assignment from a combination of weighted metrics describing similarity search score, taxonomic relationship, and informativeness. Researchers have the option to include additional filters to identify and remove contaminants, identify associated pathways, and prepare the transcripts for enrichment analysis. This fully featured pipeline is easy to install, configure, and runs significantly faster than comparable annotation packages. EnTAP is optimized to generate extensive functional information for the gene space of organisms with limited or poorly characterized genomic resources.


Subject(s)
Eukaryota/genetics , Molecular Sequence Annotation/methods , Transcriptome , Gene Ontology , Genome
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