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1.
Biophys J ; 115(12): 2295-2300, 2018 12 18.
Article in English | MEDLINE | ID: mdl-30514634

ABSTRACT

Regulation of transcription elongation is one of the key mechanisms employed to control gene expression. The single-subunit mitochondrial RNA polymerase (mtRNAP) transcribes mitochondrial genes, such as those related to ATP synthesis. We investigated how mitochondrial transcription elongation factor (TEFM) enhances mtRNAP transcription elongation using a single-molecule optical-tweezers transcription assay, which follows transcription dynamics in real time and allows the separation of pause-free elongation from transcriptional pauses. We found that TEFM enhances the stall force of mtRNAP. Although TEFM does not change the pause-free elongation rate, it enhances mtRNAP transcription elongation by reducing the frequency of long-lived pauses and shortening their durations. Furthermore, we demonstrate how mtRNAP passes through the conserved sequence block II, which is the key sequence for the switch between DNA replication and transcription in mitochondria. Our findings elucidate how both TEFM and mitochondrial genomic DNA sequences directly control the transcription elongation dynamics of mtRNAP.


Subject(s)
DNA-Directed RNA Polymerases/metabolism , Mitochondria/enzymology , Transcription Factors/metabolism , Transcription, Genetic , Biomechanical Phenomena , G-Quadruplexes , Humans , Nucleotide Motifs , Transcription Termination, Genetic
2.
Development ; 144(12): 2153-2164, 2017 06 15.
Article in English | MEDLINE | ID: mdl-28506995

ABSTRACT

Cell delamination is a conserved morphogenetic process important for the generation of cell diversity and maintenance of tissue homeostasis. Here, we used Drosophila embryonic neuroblasts as a model to study the apical constriction process during cell delamination. We observe dynamic myosin signals both around the cell adherens junctions and underneath the cell apical surface in the neuroectoderm. On the cell apical cortex, the nonjunctional myosin forms flows and pulses, which are termed medial myosin pulses. Quantitative differences in medial myosin pulse intensity and frequency are crucial to distinguish delaminating neuroblasts from their neighbors. Inhibition of medial myosin pulses blocks delamination. The fate of a neuroblast is set apart from that of its neighbors by Notch signaling-mediated lateral inhibition. When we inhibit Notch signaling activity in the embryo, we observe that small clusters of cells undergo apical constriction and display an abnormal apical myosin pattern. Together, these results demonstrate that a contractile actomyosin network across the apical cell surface is organized to drive apical constriction in delaminating neuroblasts.


Subject(s)
Drosophila Proteins/metabolism , Drosophila melanogaster/embryology , Drosophila melanogaster/metabolism , Myosins/metabolism , Neural Stem Cells/metabolism , Animals , Animals, Genetically Modified , Apoptosis , Cell Differentiation , Drosophila melanogaster/cytology , Models, Neurological , Morphogenesis/physiology , Neural Stem Cells/cytology , Neurogenesis/physiology , Receptors, Notch/metabolism , Signal Transduction
3.
Appl Opt ; 52(19): 4566-75, 2013 Jul 01.
Article in English | MEDLINE | ID: mdl-23842252

ABSTRACT

We experimentally demonstrated Bessel-like beams utilizing digital micromirror device (DMD). DMD with images imitating the equivalent axicon can shape the collimated Gaussian beam into Bessel beam. We reconstructed the 3D spatial field of the generated beam through a stack of measured cross-sectional images. The output beams have the profile of Bessel function after intensity modulation, and the beams extend at least 50 mm while the lateral dimension of the spot remains nearly invariant. Furthermore, the self-healing property has also been investigated, and all the experimental results agree well with simulated results numerically calculated through beam propagation method. Our observations demonstrate that the DMD offers a simple and efficient method to generate Bessel beams with distinct nondiffracting and self-reconstruction behaviors. The generated Bessel beams will potentially expand the applications to the optical manipulation and high-resolution fluorescence imaging owing to the unique nondiffracting property.


Subject(s)
Imaging, Three-Dimensional/instrumentation , Light , Microscopy/instrumentation , Algorithms , Computer Simulation , Electromagnetic Radiation , Equipment Design , Fourier Analysis , Image Processing, Computer-Assisted/methods , Imaging, Three-Dimensional/methods , Micromanipulation/instrumentation , Micromanipulation/methods , Microscopy/methods , Normal Distribution , Software
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