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1.
Sci Total Environ ; 837: 155731, 2022 Sep 01.
Article in English | MEDLINE | ID: mdl-35533867

ABSTRACT

The present paper was aimed at investigating the role of disposable medical masks as a substrate for microbial biofilm growth and for the selection of specific microbial traits in highly impacted marine environments. In this view, we have immerged masks in a coastal area affected by a continuous input of artisanal fishery wastes and hydrocarbons pollution caused by intense maritime traffic. Masks maintained one month in the field were colonized by a bacterial community significantly different from that detected in the natural matrices from the same areas (seawater and sediments). The masks served as a viable substrate for the growth and enrichment of phototrophic microorganisms (Oxyphotobacteria), as well as Ruminococcaceae, Gracilibacteria, and Holophageae. In a follow-up investigation, masks previously colonized in the field were transferred in lab-scale microcosms which were supplemented with hydrocarbons and which contained also a piece of a virgin mask. After one month, a shift in the community composition, likely triggered by hydrocarbons addition, was observed in the previously colonized mask, with signatures characteristic of hydrocarbon-degrading microbial groups. Such hydrocarbon-degrading bacteria were also found to colonize the virgin mask. Remarkably, SEM micrographs provided indications of the occurrence of morphological modifications of the surface components of the virgin masks colonized by hydrocarbonoclastic bacteria. Overall, for the first time, we have demonstrated the potential risk for human and animal health determined by the uncorrected disposal of masks which are suitable substrates for pathogens colonization, permanence and spreading. Moreover, we have herein strengthened the knowledge on the role of hydrocarbon-degrading bacteria in the colonization and modification of fossil-based plastics in marine environment.


Subject(s)
Bacteria , Seawater , Animals , Biodegradation, Environmental , Biofilms , Hydrocarbons , Seawater/chemistry
2.
Geobiology ; 15(5): 664-677, 2017 09.
Article in English | MEDLINE | ID: mdl-28383164

ABSTRACT

Ammonium- and Fe(II)-rich fluid flows, known from deep-sea hydrothermal systems, have been extensively studied in the last decades and are considered as sites with high microbial diversity and activity. Their shallow-submarine counterparts, despite their easier accessibility, have so far been under-investigated, and as a consequence, much less is known about microbial communities inhabiting these ecosystems. A field of shallow expulsion of hydrothermal fluids has been discovered at depths of 170-400 meters off the base of the Basiluzzo Islet (Aeolian Volcanic Archipelago, Southern Tyrrhenian Sea). This area consists predominantly of both actively diffusing and inactive 1-3 meters-high structures in the form of vertical pinnacles, steeples and mounds covered by a thick orange to brown crust deposits hosting rich benthic fauna. Integrated morphological, mineralogical, and geochemical analyses revealed that, above all, these crusts are formed by ferrihydrite-type Fe3+ oxyhydroxides. Two cruises in 2013 allowed us to monitor and sampled this novel ecosystem, certainly interesting in terms of shallow-water iron-rich site. The main objective of this work was to characterize the composition of extant communities of iron microbial mats in relation to the environmental setting and the observed patterns of macrofaunal colonization. We demonstrated that iron-rich deposits contain complex and stratified microbial communities with a high proportion of prokaryotes akin to ammonium- and iron-oxidizing chemoautotrophs, belonging to Thaumarchaeota, Nitrospira, and Zetaproteobacteria. Colonizers of iron-rich mounds, while composed of the common macrobenthic grazers, predators, filter-feeders, and tube-dwellers with no representatives of vent endemic fauna, differed from the surrounding populations. Thus, it is very likely that reduced electron donors (Fe2+ and NH4+ ) are important energy sources in supporting primary production in microbial mats, which form a habitat-specific trophic base of the whole Basiluzzo hydrothermal ecosystem, including macrobenthic fauna.


Subject(s)
Ammonium Compounds/metabolism , Archaea/metabolism , Bacteria/metabolism , Ecosystem , Ferrous Compounds/metabolism , Hydrothermal Vents/microbiology , Iron/metabolism , Chemoautotrophic Growth , Mediterranean Islands , Volcanic Eruptions
3.
Mar Pollut Bull ; 105(1): 125-30, 2016 Apr 15.
Article in English | MEDLINE | ID: mdl-26912198

ABSTRACT

The present study is focused on assessing the growth and hydrocarbon-degrading capability of the psychrophilic strain Oleispira antarctica RB-8(T). This study considered six hydrocarbon mixtures that were tested for 22days at two different cultivation temperatures (4 and 15°C). During the incubation period, six sub-aliquots of each culture at different times were processed for total bacterial abundance and GC-FID (gas chromatography-flame ionization detection) hydrocarbon analysis. Results from DNA extraction and DAPI (4',6-diamidino-2-phenylindole) staining showed a linear increase during the first 18days of the experiment in almost all the substrates used; both techniques showed a good match, but the difference in values obtained was approximately one order of magnitude. GC-FID results revealed a substantial hydrocarbon degradation rate in almost all hydrocarbon sources and in particular at 15°C rather than 4°C (for commercial oil engine, oily waste, fuel jet, and crude oil). A more efficient degradation was observed in cultures grown with diesel and bilge water at 4°C.


Subject(s)
Bacteria/metabolism , Biodegradation, Environmental , Hydrocarbons/metabolism , Water Pollutants, Chemical/metabolism , Bacteria/classification , Bacteria/genetics , Oils , Petroleum/metabolism
4.
Mar Genomics ; 17: 43-52, 2014 Oct.
Article in English | MEDLINE | ID: mdl-25088485

ABSTRACT

Obligate marine hydrocarbonoclastic bacteria possess genetic and physiological features to use hydrocarbons as sole source of carbon and to compete for the uptake of nutrients in usually nutrient-depleted marine habitats. In the present work we have studied the siderophore-based iron uptake systems in Alcanivorax borkumensis SK2 and their functioning during biodegradation of an aliphatic hydrocarbon, tetradecane, under iron limitation conditions. The antiSMASH analysis of SK2 genome revealed the presence of two different putative operons of siderophore synthetases. Search for the predicted core structures indicated that one siderophore is clearly affiliated to the family of complex oligopeptidic siderophores possessing an Orn-Ser-Orn carboxyl motif whereas the second one is likely to belong to the family of SA (salicylic acid)-based siderophores. Analyzing the supernatant of SK2 culture, an extracellular siderophore was identified and its structure was resolved. Thus, along with the recently described membrane-associated amphiphilic tetrapeptidic siderophore amphibactin, strain SK2 additionally produces an extracellular type of iron-chelating molecule with structural similarity to pseudomonins. Comparative Q-PCR analysis of siderophore synthetases demonstrated their significant up-regulation in iron-depleted medium. Different expression patterns were recorded for two operons during the early and late exponential phases of growth, suggesting a different function of these two siderophores under iron-depleted conditions.


Subject(s)
Alcanivoraceae/metabolism , Extracellular Matrix/metabolism , Genome, Bacterial/genetics , Hydrocarbons/metabolism , Siderophores/biosynthesis , Alcanivoraceae/genetics , Alkanes/metabolism , Biodegradation, Environmental , DNA Primers/genetics , Hydroxybenzoates , Indoles , Iron/pharmacokinetics , Iron Deficiencies , Magnetic Resonance Spectroscopy , Mass Spectrometry , Real-Time Polymerase Chain Reaction
5.
J Appl Microbiol ; 107(2): 590-605, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19302488

ABSTRACT

AIMS: To investigate the feasibility of applying sorbent material X-Oil in marine oil spill mitigation and to survey the interactions of oil, bacteria and sorbent. METHODS AND RESULTS: In a series of microcosms, 25 different treatments including nutrient amendment, bioaugmentation with Alcanivorax borkumensis and application of sorbent were tested. Microbial community dynamics were analysed by DNA fingerprinting methods, RISA and DGGE. Results of this study showed that the microbial communities in microcosms with highly active biodegradation were strongly selected in favour of A. borkumensis. Oxygen consumption measurements in microcosms and gas chromatography of oil samples indicated the fast and intense depletion of linear alkanes as well as high oxygen consumption within 1 week followed by consequent slower degradation of branched and polyaromatic hydrocarbons. CONCLUSION: Under given conditions, A. borkumensis was an essential organism for biodegradation, dominating the biofilm microbial community formation and was the reason of emulsification. SIGNIFICANCE AND IMPACT OF THE STUDY: This study strongly emphasizes the pivotal importance of A. borkumensis as an essential organism in the initial steps of marine hydrocarbon degradation. Interaction with the sorbent material X-Oil proved to be neutral to beneficial for biodegradation and also promoted the growth of yet unknown micro-organisms.


Subject(s)
Alcanivoraceae/metabolism , Bacteria/isolation & purification , Biodegradation, Environmental , Hydrocarbons/metabolism , Water Microbiology , Water Pollutants, Chemical/metabolism , Alcanivoraceae/genetics , Alcanivoraceae/isolation & purification , Bacteria/genetics , Chromatography, Gas , DNA Fingerprinting , DNA, Bacterial/genetics , DNA, Ribosomal/genetics , Fuel Oils/microbiology , Oxygen/metabolism , Phylogeny , RNA, Ribosomal, 16S/genetics , Seawater/microbiology , Sequence Analysis, DNA
6.
J Appl Microbiol ; 105(5): 1694-702, 2008 Nov.
Article in English | MEDLINE | ID: mdl-19149767

ABSTRACT

AIMS: In this study, we evaluated the removal efficiency of fuel hydrocarbons from a jet fuel contaminated area using bioaugmentation treatment in biopile. METHODS AND RESULTS: The hydrocarbon analysis of the sample revealed total hydrocarbons mainly constituted by benzene, toluene, ethylbenzene, xylenes (BTEX) and heavy aliphatic hydrocarbons. Enrichments of soil sample were performed with BTEX, pristane and fuel JP-5, respectively, selected hydrocarbon-degrading strains, namely Acinetobacter sp., Pseudomonas sp. and Rhodococcus sp. Three hundred litres of culture containing 10(8) cell ml(-1) of each strain and nutrients sprayed on the biopile allowed a removal of 90% of total hydrocarbons in 15 days. Bioremediation process was monitored by observation of the respiration rate and the bacterial abundance and GC-MS analysis. CONCLUSIONS: The efficiency of the treatment in the biopile was considerable. The assessment of microbial activity during the experiment is necessary for interventions targeted to improve environmental parameters such as humidity, temperature, pH and nutrients for optimization of the bioremediation process. SIGNIFICANCE AND IMPACT OF THE STUDY: A better knowledge of microbial successions at oil-polluted sites is essential for environmental bioremediation. Data obtained in biopile study improve our understanding of processes occurring during oil pollution.


Subject(s)
Bacteria/metabolism , Environmental Restoration and Remediation/methods , Hydrocarbons/metabolism , Soil Microbiology , Soil Pollutants/metabolism , Bacteria/growth & development , Benzene/metabolism , Benzene Derivatives/metabolism , Biodegradation, Environmental , Colony Count, Microbial/methods , Respiration , Toluene/metabolism , Xylenes/metabolism
7.
Environ Microbiol ; 7(1): 78-87, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15643938

ABSTRACT

The distribution of bacterial communities terminal restriction fragment length polymorphism (T-RFLP) fingerprint patterns was evaluated at three proximal hydrocarbon-contaminated sites located within the harbour of Messina. In order to analyse the short-term variability of the individual terminal restriction fragment (T-RF) patterns, water samples were collected at the three sites on three occasions within 3 months (T(0), T(90) and T(91)). Four sample sizes, from 50 to 1000 ml for each collected sample, were analysed separately (36 total analysed samples) to evaluate the relationship between the sample size and the bacterial diversity estimates. The dominant T-RF groups mostly belonged to signatures of putative hydrocarbon-degrading bacteria, as revealed by the virtual analysis of the obtained bands. In order to test whether significant differences were occurring between the analysed samples, the Kruskal-Wallis non-parametric test was applied to the T-RF data set. Neither significant influence of the sample size nor short spatial variability within the three sampled sites was detected for each sampling time. On the contrary, significant temporal changes in the diversity of the bacterial communities were observed. These results were confirmed by the non-metric multidimensional scales (nMDS) analysis of the whole set of samples, which indicated three main groups corresponding to the three different sampling times. In summary, the T-RFLP technique, although a polymerase chain reaction-based method, proved to be a suitable technique for monitoring polluted marine environments, typically characterized by low diversity and high relative abundances of a few dominant groups.


Subject(s)
Bacteria/classification , Hydrocarbons/analysis , Polymorphism, Restriction Fragment Length , Seawater/microbiology , Water Pollution , Bacteria/genetics , Bacteria/isolation & purification , DNA Fingerprinting/methods , DNA, Bacterial/analysis , DNA, Ribosomal/analysis , Ecosystem , Hydrocarbons/metabolism , Italy , Petroleum/analysis , Petroleum/metabolism , RNA, Ribosomal, 16S/genetics , Sequence Analysis, DNA
8.
J Appl Microbiol ; 95(5): 1124-33, 2003.
Article in English | MEDLINE | ID: mdl-14633042

ABSTRACT

AIMS: The effects of different growth media and temperature on production of polyunsaturated fatty acids (PUFA) by Shewanella sp. GA-22 were investigated. The attempts to characterize the GA-22 genes, homologous to those of PUFA biosynthesis gene cluster, was performed. METHODS AND RESULTS: Physiological and phylogenetic characterization of new Antarctic isolate GA-22 was performed. Total fatty acids were isolated from the cells growing under different conditions and analysed by gas chromatography-mass spectrometry (GC-MS). Using degenerated primers derived from the conserved regions within PUFA fatty acid synthase operons, five fragments of homological genes were amplified from GA-22 DNA, and two of them corresponding to pfaA and pfaC synthase subunits were sequenced. CONCLUSIONS: Strain GA-22 was shown to be able to produce three different PUFA: linoleic, arachidonic and eicosapentaenoic acids. The PUFA production was temperature- and carbon source-dependent. The deduced gene products exhibited high similarity to corresponding fatty acid synthases PfaA and PfaC. SIGNIFICANCE AND IMPACT OF STUDY: The PUFA production was detected on media supplemented with crude oil, gasoline and n-tetradecane. The apparent conservation of PUFA genes may point to the potential utilization of designed primers as functional markers in culture-independent ecological studies, and for initial screening in biotechnological fields.


Subject(s)
Fatty Acids, Unsaturated/biosynthesis , Shewanella/metabolism , Antarctic Regions , Base Sequence , Culture Media , DNA, Bacterial/genetics , Genes, Bacterial , Molecular Sequence Data , Phylogeny , Polymerase Chain Reaction/methods , RNA, Bacterial/genetics , RNA, Ribosomal, 16S/genetics , Seawater/microbiology , Sequence Alignment , Shewanella/genetics , Shewanella/physiology , Temperature , Water Microbiology
9.
Environ Microbiol ; 3(10): 662-6, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11722547

ABSTRACT

Here, we propose an advanced method for recently developed fingerprinting strategies to analyse microbial populations by direct detection of 16S rRNA sequences occurring in natural habitats. The differential display (DD) technique, which is widely used to analyse for eukaryotic gene expression, was optimized to assess bacterial rRNA diversity in environmental samples. Double-stranded cDNAs of rRNAs were synthesized without a forward primer digested with endonuclease and ligated with a double-stranded adapter. The fragments obtained were then amplified using an adapter-specific extended primer and a 16S rDNA universal reverse primer pair displayed by electrophoresis on a polyacrylamide gel. We validated this approach by characterization of a microbial community colonizing a geothermal (48 degrees C) vent system located close to the eruption zone of the south-east crater of the Mount Etna volcano, Sicily. Analysis of the patterns of abundant 16S rRNA revealed a considerable diversity of metabolically active bacteria phylogenetically clustering within the Crenarchaeota, Cyanobacteria, Firmicutes, Planctomycetales and Thermus divisions. Two sequence phylotypes were affiliated with uncultivated representatives of the recently described candidate division OP10 from a Yellowstone hot spring.


Subject(s)
Bacteria/genetics , DNA Fingerprinting/methods , RNA, Ribosomal, 16S/genetics , RNA, Ribosomal/genetics , Bacteria/classification , Bacteria/growth & development , Bacteria/isolation & purification , DNA Primers/genetics , DNA, Complementary , Ecosystem , Electrophoresis, Polyacrylamide Gel/methods , Phylogeny , RNA, Bacterial/genetics , Temperature
10.
Int J Syst Evol Microbiol ; 51(Pt 6): 2133-2143, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11760957

ABSTRACT

An alkaliphilic, halotolerant, Gram-negative, heterotrophic, aerobic and rod-shaped organism was isolated from drying soda and at a water-covered site of Lake Natron, Tanzania, by means of the most-probable-number technique developed for anoxygenic, phototrophic sulfur bacteria. It had an absolute requirement for alkalinity, but not for salinity; growth occurred at salt concentrations of 0-28% (w/v), with optimal growth at 3-8% (w/v) NaCl. The bacterium preferentially metabolized volatile fatty acids and required vitamins for growth. The name Alcalilimnicola halodurans gen. nov., sp. nov. is proposed for the novel isolate, placed in the gamma-Proteobacteria within the family Ectothiorhodospiraceae on the basis of analysis of the 16S rDNA sequence, polar lipids, fatty acids and DNA base composition. Although Alcalilimnicola halodurans is closely related to the extreme anoxygenic, phototrophic sulfur bacteria of the genus Halorhodospira, it is not phototrophic.


Subject(s)
Fresh Water/microbiology , Gammaproteobacteria/classification , Geologic Sediments/microbiology , Africa , DNA, Ribosomal , Fatty Acids/analysis , Gammaproteobacteria/genetics , Gammaproteobacteria/growth & development , Gammaproteobacteria/isolation & purification , Hydrogen-Ion Concentration , Molecular Sequence Data , Nucleic Acid Hybridization , Phylogeny , RNA, Ribosomal, 16S , Sequence Analysis, DNA , Sodium Chloride
11.
J Mol Microbiol Biotechnol ; 2(2): 217-24, 2000 Apr.
Article in English | MEDLINE | ID: mdl-10939247

ABSTRACT

Peptide synthetases are multi-domain proteins that catalyze the assembly, from amino acids and amino acid derivatives, of peptides and lipopeptides, some of which exhibit activities (pharmaceutical, surfactant, etc.) of considerable biotechnological importance. Although there is substantial interest in the generation of greater peptide diversity, in order to create new biotechnologically interesting products, attempts reported so far to exchange amino acid-activating minimal modules between enzymes have only yielded hybrid catalysts with poor activities. We report here the replacement of an entire first, L-Glu-, and fifth, L-Asp-incorporating modules of surfactin synthetase, to create a fully active hybrid enzyme that forms a novel peptide in high yields. Whole encoding regions of lichenysin A synthetase modules were introduced into surfactin biosynthesis operon between His140/His1185 of SrfAA and His1183/His2226 of SrfAB, the amino acid residues of a proposed active-site motif (HHXXXDG) of the condensation domains which is involved in the catalysis of nonribosomal peptide bond formation (Stachelhaus et al., 1998). When the lipopeptides produced by the recombinant Bacillus subtilis strains were purified and characterized, they appeared to be expressed approximately at the same level of the wild type surfactin and to be identical by their fatty acid profiles. We thereby demonstrate the utility of whole module swapping for designing novel peptides, for creating peptide diversity, and for redesigning existing peptides produced in performant production strains in high yields to correspond to desired peptides produced in low yields, or from strains unsuitable for production purposes.


Subject(s)
Bacillus cereus/genetics , Bacillus cereus/metabolism , Lipoproteins/biosynthesis , Peptides, Cyclic/biosynthesis , Amino Acid Sequence , Bacterial Proteins/biosynthesis , Bacterial Proteins/chemistry , Bacterial Proteins/genetics , Base Sequence , Biotechnology , DNA Primers/genetics , Ligases/genetics , Ligases/metabolism , Lipopeptides , Lipoproteins/chemistry , Lipoproteins/genetics , Peptide Synthases/genetics , Peptide Synthases/metabolism , Peptides, Cyclic/chemistry , Peptides, Cyclic/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Surface-Active Agents/chemistry , Surface-Active Agents/metabolism
12.
Int J Syst Evol Microbiol ; 50 Pt 3: 997-1006, 2000 May.
Article in English | MEDLINE | ID: mdl-10843038

ABSTRACT

An isolate of an acidophilic archaeon, strain YT, was obtained from a bioleaching pilot plant. The organism oxidizes ferrous iron as the sole energy source and fixes inorganic carbon as the sole carbon source. The optimal pH for growth is 1.7, although growth is observed in the range pH 1.3 to 2.2. The cells are pleomorphic and without a cell wall. 16S rRNA gene sequence analysis showed this strain to cluster phylogenetically within the order 'Thermoplasmales' sensu Woese, although with only 89.9 and 87.2% sequence identity, respectively, to its closest relatives, Picrophilus oshimae and Thermoplasma acidophilum. Other principal differences from described species of the 'Thermoplasmales' are autotrophy (strain YT is obligately autotrophic), the absence of lipid components typical of the ' Thermoplasmales' (no detectable tetraethers) and a lower temperature range for growth (growth of strain YT occurs between 15 and 45 degrees C). None of the sugars, amino acids, organic acids or other organic compounds tested was utilized as a carbon source. On the basis of the information described above, the name Ferroplasma acidiphilum gen. nov., sp. nov. is proposed for strain YT within a new family, the Ferroplasmaceae fam. nov. Strain YT is the type and only strain of F. acidiphilum. This is the first report of an autotrophic, ferrous-iron-oxidizing, cell-wall-lacking archaeon.


Subject(s)
Ferrous Compounds/metabolism , Iron/metabolism , Thermoplasmales/classification , Aerobiosis , Cell Wall , Culture Media , Hydrogen-Ion Concentration , Molecular Sequence Data , Oxidation-Reduction , Phenotype , Phylogeny , Temperature , Thermoplasmales/growth & development , Thermoplasmales/metabolism , Thermoplasmales/ultrastructure
13.
New Microbiol ; 22(3): 249-56, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10423744

ABSTRACT

During screening for biosurfactant-producing, n-alkane-degrading marine bacteria, two heterotrophic bacterial strains were isolated from enriched mixed cultures, obtained from Terra Nova Bay (Ross sea, Antarctica) by using aliphatic and artomatic hydrocarbons as the principal carbon source. These gram-positive, aerobic, cocci-shaped bacteria use a various number of organic compounds, including aliphatic hydrocarbons, volatile fatty acids, and biphenyl. During cultivation on n-alkanes as sole source of carbon and energy, all strains produced both an extracellular and cell-bound surface-active mixture of trehalose lipids which reduced the surface tension of water from 72 mN/m to 32mN/m. This class of glycolipids was found to be produced only by marine rhodococci. The 16S-rRNA gene sequence analysis showed that both strains are members of the G + C rich gram-positive group of the phylum Proteobacteria and was found to be almost identical to that of Rhodococcus fascians DSM 20669. The potential of these strains for in situ bioremediation of contaminated cold marine environment is discussed in the present study.


Subject(s)
Glycolipids/biosynthesis , Hydrocarbons/metabolism , Rhodococcus/isolation & purification , Surface-Active Agents/metabolism , Alkanes/metabolism , Antarctic Regions , Biodegradation, Environmental , Biphenyl Compounds/metabolism , Burkholderia cepacia/drug effects , DNA, Ribosomal/genetics , Glycolipids/pharmacology , Marine Biology , Phylogeny , RNA, Ribosomal, 16S/genetics , Rhodococcus/classification , Rhodococcus/genetics , Rhodococcus/metabolism , Spectrometry, Mass, Fast Atom Bombardment , Surface-Active Agents/pharmacology , Trehalose , Water Microbiology
14.
New Microbiol ; 22(3): 257-67, 1999 Jul.
Article in English | MEDLINE | ID: mdl-10423745

ABSTRACT

A study was conducted to determine the potential positive effect of novel biosurfactants on the enhancement of Aroclor 1248 metabolization in both in vitro and in situ experiments. Among two lipopeptides tested the highest activity was found in experiments with a hydrolytically opened form of lichenysin A. Lichenysin A itself did not enhance the degradation activity of chosen microorganism-degraders and in most cases inhibited their PCB mineralization rates. Glucolipid surfactant from marine bacterium Alcanivorax borkumensis showed in several tests a strong enhancing effect on microbial metabolization of Aroclor 1248 congeners. Biosurfactants appeared to act very specifically, i.e. depending on strain and concentration used. Experiments set up with soil samples did not give a clear answer whether bioemulsifiers applied at low concentration could sufficiently increase the rates of biodegradation in situ. Only A. borkumiensis glucose lipid caused the most marked enhancement of Aroclor 1248 metabolization in soil microcosm. We suggest that taking into account the specificity of surface- and biological activities of various biosurfactants they may promote the mineralization of sorbed PCBs in polluted soils, when the optimized biosurfactant-degrader combination is used.


Subject(s)
Aroclors/metabolism , Bacteria/metabolism , Surface-Active Agents/pharmacology , Bacterial Proteins/pharmacology , Biodegradation, Environmental/drug effects , Glycolipids/pharmacology , Lipopeptides , Lipoproteins/pharmacology , Peptides, Cyclic/pharmacology , Soil Microbiology , Soil Pollutants/metabolism
15.
Biochim Biophys Acta ; 1438(2): 273-80, 1999 May 18.
Article in English | MEDLINE | ID: mdl-10320810

ABSTRACT

The structural characterization of the cyclic lipoheptapeptide surfactant lichenysin A components, produced by Bacillus licheniformis strains via the non-ribosomal pathway on a corresponding peptide synthetase, was carried out using a tandem mass spectrometry (MS/MS) under fast atom bombardment (FAB) conditions. Based on the analysis of the collision-induced fragment-ion spectrum of the single charged molecular ions of both native and partially hydrolyzed forms of lipopeptide, a new general structure of lichenysin A components was elucidated. It varies from previously proposed structure by having in the peptide portion of lipopeptide the L-Gln-1 and L-Asp-5 residues instead of L-Glu-1 and L-Asn-5. The verified chemical structure of lichenysin A was found to be reflected in the structural organization of the corresponding lichenysin A synthetase, LchA, described recently.


Subject(s)
Lipoproteins/chemistry , Peptides, Cyclic/chemistry , Bacillus/chemistry , Molecular Structure , Spectrometry, Mass, Fast Atom Bombardment
16.
Biochim Biophys Acta ; 1399(2-3): 141-53, 1998 Aug 20.
Article in English | MEDLINE | ID: mdl-9765590

ABSTRACT

Certain Bacillus licheniformis strains isolated from oil wells have been shown to produce a very effective biosurfactant, lichenysin A, which is structurally similar to another less active lipopeptide, surfactin. Surfactin, like many small peptides in prokaryotes and lower eukaryotes, is synthesized non-ribosomally by multi-enzyme peptide synthetase complex. Analysis of several peptide synthetases of bacterial and fungal origin has revealed a high degree of sequence conservation. Two 35-mer oligonucleotides derived from highly conserved motifs ('core I' and 'core II') of surfactin synthetase were used to identify the cloned putative operon of lichenysin A synthetase lchA from B. licheniformis BNP29, a strain not amenable to genetic manipulation in a BAC system (F-plasmid-based bacterial artificial chromosome) based on Escherichia coli and its single-copy plasmid F-factor. A 32.4 kb fragment containing lichenysin A biosynthesis locus was sequenced and analysed. The structural architecture of putative lichenysin A synthetase protein containing seven amino acid (aa) activation-thiolation, two epimerization and one thioesterase domains is discussed in terms of its similarity to surfactin and other peptide synthetases. The 100 aa peptide chain situated between the highly conserved signature sequences FDXX and NXYGPTE(IV)X within amino acid binding domains of peptide synthetases is proposed to be a minimal block dictating the substrate specificity of the enzymes. A new operon-type structure has been localized directly upstream from the lichenysin A synthetase genes which, on the basis of sequence determination, potentially encode a four-member ABC-type transport system involved in product secretion.


Subject(s)
Bacillus/genetics , Bacterial Proteins , Ligases/genetics , Amino Acid Sequence , Base Sequence , Evolution, Molecular , Gene Library , Lipoproteins/biosynthesis , Lipoproteins/chemistry , Lipoproteins/genetics , Molecular Sequence Data , Operon , Peptide Synthases/genetics , Peptides, Cyclic/biosynthesis , Peptides, Cyclic/chemistry , Peptides, Cyclic/genetics , Promoter Regions, Genetic , Sequence Homology, Amino Acid
17.
Int J Syst Bacteriol ; 48 Pt 2: 339-48, 1998 Apr.
Article in English | MEDLINE | ID: mdl-9731272

ABSTRACT

During screening for biosurfactant-producing, n-alkane-degrading marine bacteria, six heterotrophic bacterial strains were isolated from enriched mixed cultures, obtained from sea water/sediment samples collected near the isle of Borkum (North Sea), using Mihagol-S (C14,15-n-alkanes) as principal carbon source. These Gram-negative, aerobic, rod-shaped bacteria use a limited number of organic compounds, including aliphatic hydrocarbons, volatile fatty acids, and pyruvate and its methyl ether. During cultivation on n-alkanes as sole source of carbon and energy, all strains produced both extracellular and cell-bound surface-active glucose lipids which reduced the surface tension of water from 72 to 29 mN m-1 (16). This novel class of glycolipids was found to be produced only by these strains. The 16S rRNA gene sequence analysis showed that these strains are all members of the gamma-subclass of the Proteobacteria. Their phospholipids ester-linked fatty acid composition was shown to be similar to that of members of the genus Halmonas, although they did not demonstrate a close phylogenetic relationship to any previously described species. On the basis of the information summarized above, a new genus and species, Alcanivorax borkumensis, is described to include these bacteria. Strain SK2T is the type strain of A. borkumensis.


Subject(s)
Gram-Negative Bacteria/classification , Base Composition , Base Sequence , DNA, Bacterial , Gram-Negative Bacteria/genetics , Gram-Negative Bacteria/physiology , Gram-Negative Bacteria/ultrastructure , Molecular Sequence Data , Phenotype , Phylogeny , Seawater/microbiology , Surface-Active Agents/metabolism
18.
Biotechnol Prog ; 13(6): 757-61, 1997.
Article in English | MEDLINE | ID: mdl-9413133

ABSTRACT

ComA is a DNA-binding activator protein which is required for the transcription of several late-growth phase expressed genes including srfA, an operon needed for the development of genetic competence, efficient sporulation, and surfactin production in Bacillus subtilis (B. subtilis). We show here that the ComA protein can also recognize the promoter regulatory region of the lchA, lichenysin A synthetase operon, found in. Bacillus licheniformis (B. licheniformis) when introduced into B. subtilis cells. Mutational analysis of this region suggests that a palindromic sequence upstream of the lchA promoter may be the target for ComA-dependent transcriptional activation. Considering that the comA operon is present in the B. licheniformis chromosome, we propose the similar mechanism of transcriptional activation of the lichenysin A synthetase operon.


Subject(s)
Bacillus subtilis/enzymology , Bacterial Proteins/pharmacology , DNA-Binding Proteins/pharmacology , Ligases/genetics , Promoter Regions, Genetic , Transcription, Genetic/drug effects , Amino Acid Sequence , Bacterial Proteins/chemistry , DNA, Bacterial/analysis , DNA-Binding Proteins/chemistry , Green Fluorescent Proteins , Luminescent Proteins/genetics , Molecular Sequence Data , Mutagenesis, Site-Directed , Open Reading Frames , Operon , Polymerase Chain Reaction , Recombinant Fusion Proteins
19.
Biotechnol Appl Biochem ; 23(1): 13-8, 1996 02.
Article in English | MEDLINE | ID: mdl-8867891

ABSTRACT

Lichenysin A, a surface-active lipopeptide produced by Bacillus licheniformis, strain BAS50, contains longchain beta-hydroxy fatty acids. Regulation of the synthesis of fatty acids and beta-hydroxy fatty acids was studied by modifying the culture medium. Addition of branched-chain alpha-amino acids to the medium caused similar changes to both cellular fatty acid and to beta-hydroxy fatty acid composition in the lipophilic part of lichenysin A. Production of lichenysin A was enhanced about two- and four-fold by addition of L-glutamic acid and L-asparagine respectively. It is suggested that these amino acids may be involved in the control of lipopeptide formation. Elucidation of the structure-function relationship of surface-active lipopeptides by analysis of the activities of structurally characterized compounds is discussed. Fractions of lichenysin A with branched beta-hydroxy acids in the lipid tail demonstrated lower surface-tension activity than the fractions of lichenysin A having straight beta-hydroxy acids. The presence of a lichenysin A fraction with beta-hydroxymyristic [(C14)n] acid residues appears to have an important influence on the surface activity of a mixture of lichenysins A.


Subject(s)
Amino Acids/pharmacology , Bacillus/chemistry , Lipoproteins/chemistry , Peptides, Cyclic/chemistry , Surface-Active Agents/chemistry , Amino Acid Sequence , Bacillus/drug effects , Bacillus/metabolism , Culture Media , Lipoproteins/biosynthesis , Molecular Sequence Data , Peptides, Cyclic/biosynthesis , Solubility , Structure-Activity Relationship , Surface-Active Agents/metabolism , Water/chemistry
20.
Appl Environ Microbiol ; 61(5): 1706-13, 1995 May.
Article in English | MEDLINE | ID: mdl-7646007

ABSTRACT

Strain BAS50, isolated from a petroleum reservoir at a depth of 1,500 m and identified as Bacillus licheniformis, grew and produced a lipopeptide surfactant when cultured on a variety of substrates at salinities of up to 13% NaCl. Surfactant production occurred both aerobically and anaerobically and was optimal at 5% NaCl and temperatures between 35 and 45 degrees C. The biosurfactant, termed lichenysin A, was purified and chemically characterized. A tentative structure and composition for the surfactant are described. Lichenysin A is a mixture of lipopeptides, with the major components ranging in size from 1,006 to 1,034 Da. The lipid moiety contains a mixture of 14 linear and branched beta-hydroxy fatty acids ranging in size from C12 to C17. There are seven amino acids per molecule. The peptide moiety is composed of the following amino acids: glutamic acid as the N-terminal amino acid, asparagine, valine, leucine, and isoleucine as the C-terminal amino acid, at a ratio of 1.1:1.1:1.0:2.8:1.0, respectively. Purified lichenysin A decreases the surface tension of water from 72 mN/m to 28 mN/m and achieves the critical micelle concentration with as little as 12 mg/liter, characterizing the product as a powerful surface-active agent that compares favorably to others surfactants. The antibacterial activity of lichenysin A has been demonstrated.


Subject(s)
Anti-Bacterial Agents/isolation & purification , Bacillus/chemistry , Lipoproteins/isolation & purification , Peptides, Cyclic/isolation & purification , Soil Microbiology , Surface-Active Agents/isolation & purification , Amino Acids/analysis , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Bacillus/drug effects , Bacillus/isolation & purification , Bacteria/drug effects , Energy Metabolism , Fatty Acids/analysis , Gas Chromatography-Mass Spectrometry , Lipoproteins/chemistry , Lipoproteins/pharmacology , Magnetic Resonance Spectroscopy , Micelles , Microbial Sensitivity Tests , Peptides, Cyclic/chemistry , Peptides, Cyclic/pharmacology , Petroleum , Surface Tension , Surface-Active Agents/chemistry , Surface-Active Agents/pharmacology
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