Protective effects of berberine in chronic copper-induced liver and gill injury in freshwater grouper (Acrossocheilus fasciatus).

This experiment aimed to investigate the protective effects of berberine on copper-induced liver and gill toxicities in freshwater grouper (Acrossocheilus fasciatus). Fish (initial weight 1.56 ± 0.10 g) were randomly distributed into 12 tanks (80 L, 20 fish per tank) and divided into four experimental groups: The control group, exposed to 0.02 mg/L Cu2+ (Cu group), exposed to 0.02 mg/L Cu2+ and fed 100 mg/kg berberine (BBR100 group), and exposed to 0.02 mg/L Cu2+ and fed 400 mg/kg berberine (BBR400 group). After a 30-day experiment, the results showed that berberine significantly increased the activities of catalase and glutathione peroxidase in the liver, gills, and serum inhibited by Cu2+ exposure (P < 0.05). Berberine inclusion significantly decreased the activities of lysozyme and acid phosphatase, as well as the content of immunoglobulin M compared to the Cu group (P < 0.05). Berberine significantly suppressed the expression of the proinflammatory cytokines interleukin-1ß, interleukin-6 signaling transducer, and NLR family pyrin domain containing 3 in the liver and gills induced by Cu2+ exposure while downregulating the expression of the anti-inflammatory cytokine transforming growth factor ß1. Additionally, berberine significantly reduced the activities of the liver injury markers alanine transaminase and aspartate transaminase, the levels of total cholesterol and triglyceride in serum, as well as alleviated the histopathological damage in the liver and gills caused by Cu2+ exposure. In summary, berberine enhanced antioxidant capacity, mitigated inflammation, and exerted significant protective effects on liver and gill damage in freshwater grouper under Cu2+ exposure.

Height detection of crop divider toes of sugarcane harvester based on Kalman adaptive adjustment.

Crop divider toes are an essential device of sugarcane harvester. Moving forward against the ground is a critical way to improve the harvesting rate of lodged sugarcane. Height detection is the basis for precise control of crop divider toes moving forward against the ground. Due to the current problem of operating difficulties in manually adjusting the height of crop divider, a height detection system based on a millimeter wave radar sensor was designed to detect the height of crop divider toes from the ground. This paper proposed a height detection method of crop divider toes for sugarcane harvester based on Kalman adaptive adjustment. The data measured by the sensor was pretreated to determine whether the height had changed. Reset the Kalman filter and adjust the parameters when changes occur to improve the filter response speed and ranging accuracy. To adapt to the scenario of quickly adjusting the height of crop divider during the traveling process of sugarcane harvester. A one-way ANOVA test and a two-way ANOVA test were conducted on a simulated test platform. The results of the one-way ANOVA test showed that both forward speed and vegetation cover thickness had a significant effect on height detection accuracy. The results of the two-way ANOVA test showed that the interaction of forward speed and vegetation cover thickness did not have a significant effect on ranging accuracy. It was verified through experiments that both the ranging accuracy and the response speed of height change were significantly improved after the processing of the method in this paper. The mean square error after processing was lower than 2.5 cm. The feasibility of the height detection system was verified by field trials. The results of this study will provide a reference for the design of automatic elevation of crop divider.

Chronic environmentally relevant concentration of copper exposure induces intestinal oxidative stress, inflammation, and microbiota disturbance in freshwater grouper (Acrossocheilus fasciatus).

The influence of chronic environmentally relevant concentration of Cu2+ exposure on fish intestinal health has been rarely studied. In the present study, freshwater grouper (Acrossocheilus fasciatus) was subjected to 0 (control), 0.01 mg/L Cu2+ (Cu0.01), and 0.04 mg/L Cu2+ (Cu0.04) for 30 days. The Cu0.04 group obtained a significantly reduced survival rate, weight gain, and feed intake compared to the control group (P < 0.05). Both levels of Cu2+ exposure induced oxidative stress, evidenced by increased antioxidant enzymes' activities and malondialdehyde (MDA) contents in the intestine and serum. Based on 16S rDNA analysis, both levels of Cu2+ exposure significantly reduced intestinal microbiota community richness. In the Cu2+ exposure groups, Firmicutes/Bacteroidota ratio, and potentially pathogenic bacteria, such as Proteobacteria, genus Pseudomonas, Citrobacter, Shinella, and Aeromonas were enriched. Meanwhile, the richness of probiotic bacteria, such as Fusobacteriota, Planctomycetota, Cetobacterium, Gemmobacter, and Gemmata were significantly reduced by Cu2+ exposure. Both levels of Cu2+ exposure significantly reduced villus length, lamina propria width, and muscular thickness in the foregut and hindgut, but increased intestinal goblet cell numbers. 0.04 mg/L Cu2+ exposure significantly upregulated superoxide dismutase (sod), pro-inflammation genes nuclear factor kappa b subunit 1 (nfκb1) and interleukin 1 beta (il1ß) expression, but downregulated anti-inflammation gene transforming growth factor beta 1 (tgfß1) expression. In summary, chronic environmentally relevant concentrations of Cu2+ exposure induced intestinal oxidative stress, inflammation, prevalence of pathogen and inhibition of probiotic bacteria, and damage intestinal integrity of freshwater grouper.

Dietary berberine against intestinal oxidative stress, inflammation response, and microbiota disturbance caused by chronic copper exposure in freshwater grouper (Acrossocheilus fasciatus).

Berberine (BBR) is known for its strong antioxidant, anti-inflammatory, and capacity to preserve intestinal microbiota balance in fish. This study aimed to investigate the protective effects of berberine against copper-induced toxicity in the intestine of freshwater grouper Acrossocheilus fasciatus. The experiment involved four groups: a control group, a Cu group exposed to 0.02 mg/L Cu2+, and two BBR groups fed with 100 or 400 mg/kg of berberine diets and exposed to the same Cu2+ concentration. Three replicates of healthy fish (initial weight 1.56 ± 0.10 g) were subjected to their respective treatments for 30 days. Results showed that none of the treatments significantly affected the survival rate, final weight, weight gain, and feed intake (P > 0.05). However, supplementation with 100 and 400 mg/kg of BBR significantly lowered the antioxidant activities, and glutathione peroxidase (gpx) and superoxide dismutase (sod) expression levels, as well as reduced malondialdehyde (MDA) content caused by Cu2+ exposure (P < 0.05). Berberine inclusion significantly downregulated proinflammatory factors NLR family pyrin domain containing 3 (nlrp3), interleukin 1 beta (il1ß), interleukin 6 cytokine family signal transducer (il6st) but upregulated transforming growth factor beta 1 (tgfß1) and heat shock 70 kDa protein (hsp70) expression. Moreover, berberine at both levels maintained the intestinal structural integrity and significantly improved gap junction gamma-1 (gjc1) mRNA level compared to the Cu group (P < 0.05). Based on 16S rDNA sequencing, the richness and diversity of intestinal microbiota in different groups were not significantly influenced. Berberine reduced the Firmicutes/Bacteroidota ratio and stifled the growth of some specific pathogenic bacteria such as Pseudomonas, Citrobacter, and Acinetobacter, while boosting the richness of potential probiotic bacteria, including Roseomonas and Reyranella compared with the Cu group. In conclusion, berberine showed significant protective effects against Cu2+-induced intestinal oxidative stress, inflammation response, and microbiota disturbance in freshwater grouper.

Influences of chronic copper exposure on intestinal histology, antioxidative and immune status, and transcriptomic response in freshwater grouper (Acrossocheilus fasciatus).

Copper (Cu) contamination is commonly found in both natural water environments and fish farms, and it can cause severe damage to different fish organs, but Cu-induced intestinal damage has been rarely studied. This study subjected three groups of freshwater grouper (Acrossocheilus fasciatus) (initial weight: 1.56 ± 0.10 g) to 0 mg/L, 0.01 mg/L, and 0.04 mg/L Cu2+ for 30 days, named Con, Cu0.01, and Cu0.04 groups, respectively. The histological observation indicated that the Cu0.04 group caused a significant decrease in villus length, lamina propria width, and muscular thickness compared to the Con group (P < 0.05). Additionally, the Cu0.04 group significantly increased intestinal superoxide dismutase (SOD), glutathione peroxidase (GPx), lysozyme (LZM) activities, as well as malondialdehyde (MDA) content than the Con group (P < 0.05). Meanwhile, the Cu0.01 and Cu0.04 groups showed significantly increased immunoglobulin M (IgM), complement 3 (C3), and glutathione (GSH) contents than the Con group (P < 0.05). Transcriptomic analysis revealed a total of 101 differentially expressed genes (DEGs), including 47 up-regulated and 54 down-regulated DEGs, were identified between the Cu0.04 and Con groups. Notably, the DEGs were mainly related to intestinal structure construction, immune functions, apoptosis, and resistance to DNA damage and pathogen infection. The findings suggest that chronic Cu exposure caused intestinal histological alterations, activated the antioxidative and immune systems, and induced systematic adaptation to cope with the physical barrier injury, DNA damage, and potential pathogen growth.

Characterizing sources and ozone formations of summertime volatile organic compounds observed in a medium-sized city in Yangtze River Delta region.

Volatile organic compounds (VOCs) emitted from various sources into atmosphere could cause serious O3 pollution in urban areas. Although characterizations of ambient VOCs have been extensively studied in megacities, they are scarcely investigated in medium/small-sized cities, which could present different pollution characterizations due to the factors like emission sources and populations. Herein, field campaigns were conducted concurrently at six sites in a medium-sized city of Yangtze River Delta region to determine ambient levels, O3 formations and source contributions of summertime VOCs. During the observation period, the total VOC (TVOCs) mixing ratios ranged from 27.10 ± 3.35 to 39.09 ± 10.84 ppb at six sites. The ozone formation potential (OFP) results showed that alkenes, aromatics and oxygenated VOCs (OVOCs) were dominant contributors, together sharing 81.4% of total calculated OFPs. Ethene ranked the largest OFP contributor at all six sites. A high VOC site, KC, was selected as a case to detailed analyze diurnal variations of VOCs and its relationship with O3. Consequently, diurnal patterns varied with VOC groups, and TVOC concentrations were lowest during strong photochemical period (15:00-18:00 p.m.), opposite to the O3 peak. VOCs/NOx ratios and observation-based model (OBM) analysis revealed that O3 formation sensitivity was primarily in transition regime in summertime and that the reduction of VOCs rather than NOX would be more efficient to suppress O3 peak at KC during pollution episode. Additionally, source apportionment conducted with positive matrix factorization (PMF) indicated that industrial emission (29.2%-51.7%) and gasoline exhaust (22.4%-41.1%) were major sources for VOCs at all six sites, and that VOCs from industrial emissions and gasoline exhaust were the key precursors for ozone formation. Our results shed light on the importance of alkenes, aromatics and OVOCs in forming O3 and propose that preferentially reducing VOCs especially those from industrial emission and gasoline exhaust would benefit alleviating O3 pollution.

Low-head dams induce biotic homogenization/differentiation of fish assemblages in subtropical streams.

Extensive distribution of widespread species and the loss of native species driven by anthropogenic disturbances modify community similarity, resulting in a decrease or increase in community distinctiveness. Data from four basins in the Wannan Mountains, China, were used to evaluate the effects of low-head dams on patterns of fish faunal homogenization and differentiation based on abundance data. We aimed to examine the spatial changes in taxonomic and functional similarities of fish assemblages driven by low-head dams and to examine whether the changes in the similarity of fish assemblages differed between taxonomic and functional components. We found that low-head dams significantly decreased the mean taxonomic similarity but increased the mean functional similarity of fish assemblages in impoundments using abundance-based approaches, suggesting that taxonomic differentiation accompanied functional homogenization in stream fish assemblages. These results show the importance of population abundance in structuring fish faunal homogenization and differentiation at small scales, especially when the major differences among assemblages are in species abundance ranks rather than species identities. Additionally, we also found only a weak positive correlation between changes in mean taxonomic and functional similarities, and partial pairs exhibited considerable variation in patterns of fish faunal homogenization and differentiation for taxonomic and functional components. In conclusion, this study highlighted that the observed taxonomic differentiation of current fish assemblages (short-term phenomenon) is probably an early warning sign of further homogenization in regions where native species are completely predominated and that changes in taxonomic similarity cannot be used to predict changes in functional similarity.

Signals of Potential Species Associations Offer Clues about Community Organisation of Stream Fish across Seasons.

Environmental filtering, spatial factors and species interactions are fundamental ecological mechanisms for community organisation, yet the role of such interactions across different environmental and spatial settings remains mostly unknown. In this study, we investigated fish community organisation scenarios and seasonal species-to-species associations potentially reflecting biotic associations along the Qiupu River (China). Based on a latent variable approach and a tree-based method, we compared the relative contribution of the abiotic environment, spatial covariates and potential species associations for variation in the community structure, and assessed whether different assembly scenarios were modulated by concomitant changes in the interaction network structure of fish communities across seasons. We found that potential species associations might have been underestimated in community-based assessments of stream fish. Omnivore species, since they have more associations with other species, were found to be key components sustaining fish interaction networks across different stream orders. Hence, we suggest that species interactions, such as predation and competition, likely played a key role in community structure. For instance, indices accounting for network structure, such as connectance and nestedness, were strongly correlated with the unexplained residuals from our latent variable approach, thereby re-emphasising that biotic signals, potentially reflecting species interactions, may be of primary importance in determining stream fish communities across seasons. Overall, our findings indicate that interaction network structures are a powerful tool to reflect the contribution of potential species associations to community assembly. From an applied perspective, this study should encourage freshwater ecologists to empirically capture and manage biotic constraints in stream ecosystems across different geographical and environmental settings, especially in the context of the ever-increasing impacts of human-induced local extinction debts and species invasions.

Phosphorus accelerate the sulfur cycle by promoting the release of malodorous volatile organic sulfur compounds from Microcystis in freshwater lakes.

Volatile organic sulfur compounds (VSCs) released by algae are of great significance in sulfur cycle, climate regulation and biological information transmission, and they also caused taste and odor in freshwaters. However, the categories, sources, and environmental regulatory factors of VSCs in freshwaters were less known. Here, we show that eight common freshwater cyanobacterium Microcystis, which bloom in freshwaters over the world, are found to be important producers of VSCs. Dimethyl sulfide (DMS), dimethyl disulfide (DMDS) and isopropyl methyl sulfide (IPMS) are the main VSCs with the highest concentrations 184.81 nmol/L, 162.01 nmol/L and 101.55 nmol/L, respectively. The amount of VSCs released from those Microcystis varied greatly, M. elabens, M. panniformis and M. flos-aquae released the largest amount of VSCs (1260.52 nmol S/L, 1154.75 nmol S/L and 670.58 nmol S/L), and M. wesenbergii had the smallest release amount. We also found for the first time that phosphorus (P) was one of the important factors for the regulation VSCs from most Microcystis. P can elevate the release of DMS by promoting the biomass and DMS yields of most Microcystis in the range 0.05 mg/L to 0.5 mg/L. Similar results were also found in 16 lakes at three different spatiotemporal scales. Overall, we revealed that the common freshwater Microcystis were able to release diverse thioethers, and the major VSCs were significantly influenced by water P concentrations. In the context of global freshwater eutrophication and Microcystis bloom, freshwater cyanobacteria driven sulfur cycle and water odor will probably be further strengthened.

Pelagic-benthic resource polymorphism in Schizopygopsis thermalis Herzenstein 1891 (Pisces, Cyprinidae) in a headwater lake in the Salween River system on the Tibetan Plateau.

Resource polymorphism is a ubiquitous phenomenon in vertebrates and may represent a critical intermediate stage in speciation. Freshwater lakes in high-altitude areas represent a natural system for understanding resource polymorphism in fishes benefiting from diverse lacustrine environments and species-poor fish assemblages. We report resource polymorphism in a cyprinid fish, Schizopygopsis thermalis, in Lake Amdo Tsonak Co, a headwater lake in the upper Salween River system. Two discrete intraspecific morphs, planktivorous and benthivorous, were identified according to geometric morphometrics and traditional univariate linear measures. The planktivorous morph exhibits a longer head, longer upper and lower jaw, larger asymptotic standard length (L∞ ), lower growth rate (k), and higher growth performance index (φ) than the benthivorous morph. With respect to descriptive traits, the planktivorous morph possesses a large, terminal mouth and obvious mucus pores on the cheek and chin, while the benthivorous morph is characterized by a more inferior mouth with a sharpen horny edge on the lower jaw and unconspicuous mucus pores. The discrete pelagic-benthic resources and low interspecific competition in the lake system might drive the initial differentiation of the two morphs, and partial spatial reproductive isolation in breeding further maintains and reinforces the differences between them.

R language-based methods for revealing taxonomic and functional diversity and tracing process of fish fauna.

This paper presented the fish species richness at geographical unit of the Yangtze River. According to the fish taxonomic catalogs and biological traits, R language method was used to determine taxonomic diversity and functional diversity and the components of each unit. Regression analysis was used to test the varying tendency of taxonomic and functional diversity corresponding to the change of species richness. •Functional diversity is compared against taxonomic diversity in capturing the structure of dynamic ecosystem.•The ß-diversity indices of taxonomy and function were calculated and decomposed to evaluate the role of species turnover and nestedness in the formation process of fish spatial pattern.•An integrated diversity index, balancing α and ß diversity of species richness, taxonomic and functional diversity, is used to screen the prior conservation zone.

Dataset on the distribution location and biological traits of freshwater fishes in the Yangtze River Basin.

In this data article, we provide the scientific and theoretical data on fish taxonomy including class, order, family, and genus in the Yangtze River. The Yangtze basin is divided into 56 units, and their geological information including latitude, longitude, latitude, and channel length is recorded. Fish presence/absence data at the unit scale are reported. Biological traits including morphological, physiological, and ecological characters of each fish species are also described, numeralized, and reported. These data are the foundation of the analyses and results in the article "Continental-scale analysis of taxonomic and functional fish diversity in the Yangtze River" (Kang et al., 2018).

Influences of local habitat, tributary position, and dam characteristics on fish assemblages within impoundments of low-head dams in the tributaries of the Qingyi River, China.

Low-head dam impoundments modify local habitat and alter fish assemblages; however, to our knowledge, the pattern of how fish assemblages in the impoundments relate to local habitat, tributary position, and dam characteristics is still unclear. We used data collected in 62 impoundments created by low-head dams in headwater streams of the Qingyi River, China, to examine relationships between fish assemblages and local habitat, tributary position, and dam characteristics. We also assessed the relative importance of the three groups of factors in determining fish species richness and composition. Linear regression models showed that fish species richness was related to substrate heterogeneity, confluence link, and dam number upstream. Redundancy analysis showed that fish species compositions were influenced by substrate heterogeneity, confluence link, dam height, dam numbers upstream and downstream. Overall, dam characteristics were more important in affecting fish species richness but less important in determining fish species composition than local habitat (i.e., substrate heterogeneity) and tributary position. Our results suggest that low-head dam may affect fish species richness in impoundments by modifying local habitat and constraining fish movement, and the relative abundances of those fish species may depend more on species habitat presences and stream size than on impoundment size and number.

The complete mitochondrial genome of the Zacco platypus, Huangshan, China (Cypriniformes: Cyprinidae, subfamily Daninninae).

The mitochondrial genome of Zacco platypus (Cypriniformes: Cyprinidae, subfamily Daninninae) is a circular molecule of 16,611 bp in length, containing 37 typical animal mitochondrial genes: 13 protein-coding genes (PCGs), 2 ribosomal RNAs, 22 transfer RNAs and a D-loop region. Its gene order and arrangement are identical to the common type found in most fish mitogenomes. All PCGs start with a typical ATG codon except for COI which use GTG as start codon; all PCGs terminate in the common stop codon TAA or TAG, except for the COII which use single T as stop codon. The D-loop region is 928 bp long, located between tRNAPro and tRNAPhe genes. It contains some structures of repeated motifs and microsatellite-like elements characteristic of the Cyprinidae.

The complete mitochondrial genome of the Acrossocheilus fasciatus (Cyprinidae, Barbinae).

The mitochondrial genome of Acrossocheilus fasciatus (Cyprinidae, Barbinae) is a circular molecule of 16,589 bp in length, containing 37 typical animal mitochondrial genes: 13 protein-coding genes (PCGs), 2 r RNAs, 22 t RNAs and a non-coding D-loop region. Its gene order and arrangement are identical to the common type found in most fish mitogenomes. All PCGs start with a typical ATG codon except for COI which use GTG as a start codon; all PCGs terminate in the common stop codon TAA or TAG, except for the ND2, ND3, ND4, COII, Cytb and COIII which use single T or TA as a stop codon. The non-coding D-loop region is 938 bp long, located between tRNAPro and tRNAPhe genes. It contains some structures of repeated motifs and microsatellite-like elements characteristic of the Cyprinidae.

Influence of a large dam on the longitudinal patterns of fish assemblages in Qingyi Stream.

Using seasonally collected data (2009-2010) from 15 sampling sites that represent first- to fifth-order streams within the Qingyi watershed, we examined the spatio-temporal patterns of fish assemblages along two longitudinal gradients to explore the effects of a large dam on fish assemblages at the watershed scale. No significant variation was observed in either species richness or assemblage structure across seasons. Species richness significantly varied according to stream order and gradient. Dam construction appeared to decrease species richness upstream substantially, while a significant decrease between gradients only occurred within fourth-order streams. Along the gradient without the large dam, fish assemblage structures presented distinct separation between two neighboring stream orders, with the exception of fourth-order versus fifth-order streams. However, the gradient disrupted by a large dam displayed the opposite pattern in the spatial variation of fish assemblages related with stream orders. Significant between-gradient differences in fish assemblage structures were only observed within fourth-order streams. Species distributions were determined by local habitat environmental factors, including elevation, substrate, water depth, current discharge, wetted width, and conductivity. Our results suggested that dam construction might alter the longitudinal pattern in fish species richness and assemblage structure in Qingyi Stream, despite the localized nature of the ecological effect of dams.

[Spatial and temporal patterns of stream fish assemblages in the Qiupu Headwaters National Wetland Park].

Identifying and clarifying how stream fish assemblage patterns vary spatially and temporally are basic measures for the conservation and management of fish species. Based on data collected from 24 wadeable reaches within the Qiupu Headwaters National Wetland Park between May and October 2012, we examined the spatial and temporal patterns of the assemblage structures and diversities, collecting a total of 29 fish species belonging to four orders and ten families. The results of our survey showed influences of local habitat and tributary spatial position variables on fish assemblages. Fish diversity showed significant variations across stream-orders and seasons, which were higher in the second-order streams than in first-order streams and higher in October than in May. Habitat factors such as substrate coarseness and heterogeneity, water temperature and water depth, as well as tributary position factor-link, showed significant effects on fish diversity. Fish assemblages fitted the nested pattern that upstream assemblages presented as a nested subset of downstream assemblages. Fish assemblage structures did not vary significantly across seasons but did across stream-orders; fish assemblages between first- and second-order streams showed significant differences despite some overlap. These spatial differences mainly resulted from spatial variations of the relative abundance of Cobitis rarus, Ctenogobius sp., Zacco platypus, Phoxinus oxycephalus, Rhodeus ocellatus and Vanmanenia stenosoma, among which P. oxycephalus had higher abundance in first-order than in second-order streams but the other five species were more abundant in second-order streams. Fish assemblage structures were significantly related to substrate heterogeneity, water depth, stream order, link and C-link.

Age, growth and reproduction of Sarcocheilichthys nigripinnis from the Qingyi Stream in the Huangshan Mountains.

Identifying the life-history strategies of fish and their associations with the surrounding environment is the basic foundation in the conservation and sustainable utilization of fish species. We examined the age, growth, and reproduction of Sarcocheilichthys nigripinnis using 352 specimens collected monthly from May 2009 to April 2010 in the Qingyi Stream. We found the sex ratio of this study population was 0.58:1 (female: male), significantly different from expected 1:1. Females and males both comprised four age groups. The annuli on the scales were formed during February and March. No obvious between-sex difference was observed in length-weight and length-scale-radius relationships. The total length in back-calculation significantly increased with age for both sexes, but did not differ significantly at each age between the two sexes. An inflection point was observed in the growth curves given by the von Bertalanffy growth function for total weight. At this inflection point, fish were 3.95 years. Both sexes reach their 50% sex maturity at age 2, when females and males were 94.7 mm and 103.0 mm total length. The temporal pattern of the gonado-somatic index corresponded to a spawning period that occurred from April through July. The non-synchronicity of egg diameter in each mature ovary during the breeding period suggested these fish may be batch spawners. The absolute fecundity increased significantly with total length and weight, whereas no significant correlation was observed between the relative fecundity and body size.