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1.
Phys Rev E ; 108(1-1): 014204, 2023 Jul.
Article in English | MEDLINE | ID: mdl-37583212

ABSTRACT

Multiple pendulums are investigated numerically and analytically to clarify the nonuniformity of average kinetic energies of particles. The nonuniformity is attributed to the system having holonomic constraints and it is consistent with the generalized principle of the equipartition of energy. With the use of explicit expression for Hamiltonian of a multiple pendulum, approximate expressions for temporal and statistical average of kinetic energies are obtained, where the average energies are expressed in terms of masses of particles. In a typical case, the average kinetic energy is large for particles near the end of the pendulum and small for those near the root. Moreover, the exact analytic expressions for the average kinetic energy of the particles are obtained for a double pendulum.

2.
Phys Rev E ; 105(6-1): 064201, 2022 Jun.
Article in English | MEDLINE | ID: mdl-35854573

ABSTRACT

We present dynamical effects on conformation in a simple bead-spring model consisting of three beads connected by two stiff springs. The conformation defined by the bending angle between the two springs is determined not only by a given potential energy function depending on the bending angle, but also by fast motion of the springs which constructs the effective potential. A conformation corresponding with a local minimum of the effective potential is hence called the dynamically induced conformation. We develop a theory to derive the effective potential using multiple-scale analysis and the averaging method. A remarkable consequence is that the effective potential depends on the excited normal modes of the springs and amount of the spring energy. Efficiency of the obtained effective potential is numerically verified.

3.
Phys Rev E ; 104(3-1): 034209, 2021 Sep.
Article in English | MEDLINE | ID: mdl-34654065

ABSTRACT

We study the energy distribution during the emergence of a quasiequilibrium (QE) state in the course of relaxation to equipartition in slow-fast Hamiltonian systems. A bead-spring model where beads (masses) are connected by springs is considered. The QE lasts for a long time because the energy exchange between the high-frequency vibrational and other motions is prevented when springs in the molecule become stiff. We numerically calculated the time-averaged kinetic energy and found that the kinetic energy of the solvent particles was always higher than that of the bead in a molecule. This is explained by adopting the equipartition theorem in QE, and it agrees well with the numerical results. The energy difference can help determine how far the system is from achieving equilibrium, and it can be used as an indicator of the number of frozen or inactive degrees existing in the molecule.

4.
Chaos ; 31(6): 063113, 2021 Jun.
Article in English | MEDLINE | ID: mdl-34241311

ABSTRACT

We consider a pair of collectively oscillating networks of dynamical elements and optimize their internetwork coupling for efficient mutual synchronization based on the phase reduction theory developed by Nakao et al. [Chaos 28, 045103 (2018)]. The dynamical equations describing a pair of weakly coupled networks are reduced to a pair of coupled phase equations, and the linear stability of the synchronized state between the networks is represented as a function of the internetwork coupling matrix. We seek the optimal coupling by minimizing the Frobenius and L1 norms of the internetwork coupling matrix for the prescribed linear stability of the synchronized state. Depending on the norm, either a dense or sparse internetwork coupling yielding efficient mutual synchronization of the networks is obtained. In particular, a sparse yet resilient internetwork coupling is obtained by L1-norm optimization with additional constraints on the individual connection weights.

5.
Phys Rev E ; 96(1-1): 012224, 2017 Jul.
Article in English | MEDLINE | ID: mdl-29347085

ABSTRACT

Optimization of the stability of synchronized states between a pair of symmetrically coupled reaction-diffusion systems exhibiting rhythmic spatiotemporal patterns is studied in the framework of the phase reduction theory. The optimal linear filter that maximizes the linear stability of the in-phase synchronized state is derived for the case in which the two systems are nonlocally coupled. The optimal nonlinear interaction function that theoretically gives the largest linear stability of the in-phase synchronized state is also derived. The theory is illustrated by using typical rhythmic patterns in FitzHugh-Nagumo systems as examples.

6.
Article in English | MEDLINE | ID: mdl-25615171

ABSTRACT

We consider a canonical ensemble of synchronization-optimized networks of identical oscillators under external noise. By performing a Markov chain Monte Carlo simulation using the Kirchhoff index, i.e., the sum of the inverse eigenvalues of the Laplacian matrix (as a graph Hamiltonian of the network), we construct more than 1,000 different synchronization-optimized networks. We then show that the transition from star to core-periphery structure depends on the connectivity of the network, and is characterized by the node degree variance of the synchronization-optimized ensemble. We find that thermodynamic properties such as heat capacity show anomalies for sparse networks.

7.
Phys Rev E Stat Nonlin Soft Matter Phys ; 85(5 Pt 2): 056206, 2012 May.
Article in English | MEDLINE | ID: mdl-23004842

ABSTRACT

Can synchronization properties of a network of identical oscillators in the presence of noise be improved through appropriate rewiring of its connections? What are the optimal network architectures for a given total number of connections? We address these questions by running the optimization process, using the stochastic Markov Chain Monte Carlo method with replica exchange, to design networks of phase oscillators with increased tolerance against noise. As we find, the synchronization of a network, characterized by the Kuramoto order parameter, can be increased up to 40%, as compared to that of the randomly generated networks, when the optimization is applied. Large ensembles of optimized networks are obtained, and their statistical properties are investigated.

8.
Phys Rev E Stat Nonlin Soft Matter Phys ; 81(5 Pt 2): 056204, 2010 May.
Article in English | MEDLINE | ID: mdl-20866304

ABSTRACT

Starting with an initial random network of oscillators with a heterogeneous frequency distribution, its autonomous synchronization ability can be largely improved by appropriately rewiring the links between the elements. Ensembles of synchronization-optimized networks with different connectivities are generated and their statistical properties are studied.

9.
Phys Rev E Stat Nonlin Soft Matter Phys ; 78(5 Pt 2): 056208, 2008 Nov.
Article in English | MEDLINE | ID: mdl-19113201

ABSTRACT

We study the dynamics of a reaction-diffusion system comprising two mutually coupled excitable fibers. We consider a case in which the dynamical properties of the two fibers are nonidentical due to the parameter mismatch between them. By using the spatially one-dimensional FitzHugh-Nagumo equations as a model of a single excitable fiber, synchronized pulses are found to be stable in some parameter regime. Furthermore, there exists a critical coupling strength beyond which the synchronized pulses are stable for any amount of parameter mismatch. We show the bifurcation structures of the synchronized and solitary pulses and identify a codimension-2 cusp singularity as the source of the destabilization of synchronized pulses. When stable solitary pulses in both fibers disappear via a saddle-node bifurcation on increasing the coupling strength, a reentrant wave is formed. The parameter region, where a stable reentrant wave is observed in direct numerical simulation, is consistent with that obtained by bifurcation analysis.

10.
Chaos ; 2(3): 343-350, 1992 Jul.
Article in English | MEDLINE | ID: mdl-12779984

ABSTRACT

A minimal model for boiling is proposed. With increasing temperature of a bottom plate, the model shows three successive phases; conduction, nucleate, and film boiling. In the nucleate regime the heat flux increases with the temperature of the bottom plate, while it decreases in the film boiling regime. In the boiling phase, the maximum Lyapunov exponent is positive, implying that the boiling phenomena are spatiotemporally chaotic.

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