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1.
J Chem Theory Comput ; 14(7): 3643-3655, 2018 Jul 10.
Article in English | MEDLINE | ID: mdl-29889514

ABSTRACT

A triple-layer QM/sQM/MM method was developed for accurately describing the excited-state molecular interactions between chromophore and the molecular environment (Hasegawa, J.; Yanai, K.; Ishimura, K. ChemPhysChem 2015, 16, 305). A first-order-interaction space (FOIS) was defined for the interactions between QM and secondary QM (sQM) regions. Moreover, configuration interaction singles (CIS) and its second-order perturbation theory (PT2) calculations were performed within this space. In this study, numerical implementation of this FOISPT2 method significantly reduced the computing time, which realized application to solvatochromic systems, p-coumaric acid in neutral ( p-CA) and anionic forms in aqueous solution, retinal Schiff base in methanol (MeOH) solution, and bacteriorhodopsin (bR). The results were consistent with the experimentally observed absorption spectra of the applied systems. The QM/sQM/MM result for the opsin shift was in better agreement to the experimental result than that of the ordinary QM/MM. A decomposition analysis was performed for the excited-state molecular interactions. Among the electronic interactions, charge-transfer (CT) effect, excitonic interaction, and dispersion interaction showed significant large contributions, while the electronic polarization effect presented only minor contribution. Furthermore, the result was analyzed to determine the contributions from each environmental molecule and was interpreted based on the distance of the molecules from the π system in the chromophores.

2.
J Phys Chem A ; 120(51): 10273-10280, 2016 Dec 29.
Article in English | MEDLINE | ID: mdl-27966940

ABSTRACT

The electronic polarization (POL) of the surrounding environment plays a crucial role in the energetics of charge-separated systems. Here, the mechanism of POL in charge-separated systems is studied using a combined quantum mechanical and effective fragment potential (QM/EFP) method. In particular, the POL effect caused by charge separation (CS) is investigated at the atomic level by decomposition into the POL at each polarizability point. The relevance of the electric field generated by the CS is analyzed in detail. The model systems investigated are Na+-Cl- and guanine-thymine solvated in water. The dominant part of the POL arises from solvent molecules close to the donor (D) and acceptor (A) units. At short D-A distances, the electric field shows both positive and negative interferences. The former case enhances the POL energy. At longer distances, the interference is weakened, and the local electric field determines the POL energy.

3.
Chemphyschem ; 16(2): 305-11, 2015 Feb 02.
Article in English | MEDLINE | ID: mdl-25393373

ABSTRACT

Intermolecular interactions regulate the molecular properties in proteins and solutions such as solvatochromic systems. Some of the interactions have to be described at an electronic-structure level. In this study, a commutator for calculating the excitation energy is used for deriving a first-order interacting space (FOIS) to describe the environmental response to solute excitation. The FOIS wave function for a solute-in-solvent cluster is solved by second-order perturbation theory. The contributions to the excitation energy are decomposed into each interaction and for each solvent.

4.
Dalton Trans ; 43(43): 16377-86, 2014 Nov 21.
Article in English | MEDLINE | ID: mdl-25247241

ABSTRACT

Zn(2+)-induced fluorescence enhancement of the TPEN (N,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamine)-based ligand, N,N-bis(1-isoquinolylmethyl)-N',N'-bis(pyridylmethyl)ethylenediamine (N,N-1-isoBQBPEN, 1b), has been investigated. Upon Zn(2+) binding, 1b shows a fluorescence increase (ϕZn = 0.028) at 353 and 475 nm. The fluorescence enhancement at longer wavelengths is due to intramolecular excimer formation of two isoquinolines and is specific for Zn(2+); Cd(2+) induces very small fluorescence at 475 nm (ICd/IZn = 10%). The excimer formation of the [Zn(1b)](2+) complex in the excited state is supported by the time-dependent DFT calculation. Neither long-wavelength fluorescence nor excimer formation is observed in the Zn(2+) complex of N,N'-1-isoBQBPEN (2b). The quinoline analog N,N-BQBPEN (1a) exhibits similar but significantly smaller excimer formation. Thermodynamic and kinetic comparisons of Zn(2+) binding properties of ethylenediamine-based hexadentate ligands with pyridines and (iso)quinolines are comprehensively discussed.


Subject(s)
Coordination Complexes/chemistry , Ethylenediamines/chemistry , Zinc/chemistry , Crystallography, X-Ray , Hydrogen-Ion Concentration , Isoquinolines/chemistry , Kinetics , Ligands , Molecular Conformation , Pyridines/chemistry , Thermodynamics
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