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1.
J Cell Physiol ; 232(6): 1262-1269, 2017 Jun.
Article in English | MEDLINE | ID: mdl-27631155

ABSTRACT

Cellular reprogramming by epigenomic remodeling of chromatin holds great promise in the field of human regenerative medicine. As an example, human-induced Pluripotent Stem Cells (iPSCs) obtained by reprograming of patient somatic cells are sufficiently similar to embryonic stem cells (ESCs) and can generate all cell types of the human body. Clinical use of iPSCs is dependent on methods that do not utilize genome altering transgenic technologies that are potentially unsafe and ethically unacceptable. Transient delivery of exogenous RNA into cells provides a safer reprogramming system to transgenic approaches that rely on exogenous DNA or viral vectors. RNA reprogramming may prove to be more suitable for clinical applications and provide stable starting cell lines for gene-editing, isolation, and characterization of patient iPSC lines. The introduction and rapid evolution of CRISPR/Cas9 gene-editing systems has provided a readily accessible research tool to perform functional human genetic experiments. Similar to RNA reprogramming, transient delivery of mRNA encoding Cas9 in combination with guide RNA sequences to target specific points in the genome eliminates the risk of potential integration of Cas9 plasmid constructs. We present optimized RNA-based laboratory procedure for making and editing iPSCs. In the near-term these two powerful technologies are being harnessed to dissect mechanisms of human development and disease in vitro, supporting both basic, and translational research. J. Cell. Physiol. 232: 1262-1269, 2017. © 2016 Wiley Periodicals, Inc.


Subject(s)
Disease , Gene Editing , Induced Pluripotent Stem Cells/metabolism , Models, Biological , RNA/metabolism , Cell Differentiation , Cellular Reprogramming , Drug Discovery , Genetic Vectors/metabolism , Humans , Precision Medicine
2.
Bioorg Med Chem Lett ; 22(15): 5078-83, 2012 Aug 01.
Article in English | MEDLINE | ID: mdl-22749283

ABSTRACT

We have designed and synthesized a series of HIV protease inhibitors (PIs) with enamino-oxindole substituents optimized to interact with the S2' subsite of the HIV protease binding pocket. Several of these inhibitors have sub-nanomolar K(i) and antiviral IC(50) in the low nM range against WT HIV and against a panel of multi-drug resistant (MDR) strains.


Subject(s)
HIV Protease Inhibitors/chemistry , HIV Protease/chemistry , HIV-1/enzymology , Indoles/chemistry , Binding Sites , Crystallography, X-Ray , Darunavir , Drug Resistance, Viral/drug effects , HIV Protease/metabolism , HIV Protease Inhibitors/chemical synthesis , HIV Protease Inhibitors/pharmacology , HIV-1/drug effects , Humans , Indoles/chemical synthesis , Indoles/pharmacology , Oxindoles , Protein Structure, Tertiary , Structure-Activity Relationship , Sulfonamides/chemistry , Sulfonamides/pharmacology
3.
Biol Psychiatry ; 58(2): 85-96, 2005 Jul 15.
Article in English | MEDLINE | ID: mdl-16038679

ABSTRACT

BACKGROUND: Hippocampal dentate granule neurons are altered in schizophrenia, but it is unknown if their gene expressions change in schizophrenia or other psychiatric diseases. METHODS: Laser-captured dentate granule neurons from two groups of schizophrenia and control cases and from major depression and bipolar disease cases were examined for alterations in gene expression using complementary DNA (cDNA) microarrays and reverse transcription polymerase chain reaction (RT-PCR). RESULTS: Compared with 24 control cases, the 22 schizophrenia patients in both groups revealed decreases in clusters of genes that encode for protein turnover (proteasome subunits and ubiquitin), mitochondrial oxidative energy metabolism (isocitrate, lactate, malate, nicotinamide adenine dinucleotide [NADH], and succinate dehydrogenases; cytochrome C oxidase; adenosine triphosphate [ATP] synthase), and genes associated with neurite outgrowth, cytoskeletal proteins, and synapse plasticity. These changes were not obtained in 9 bipolar cases or 10 major depression cases and were not associated with age, sex, brain weight, body weight, postmortem interval, or drug history. Brain pH contributed to the variance of some genes but was mostly independent of the disease effect. CONCLUSIONS: Decreases in hippocampal neuron gene expression are consistent with brain imaging and microarray studies of the frontal cortex in schizophrenia. A mitochondrial and ubiquitin-proteasome hypofunctioning of dentate granule neurons may contribute to the deficits of schizophrenia.


Subject(s)
Dentate Gyrus/metabolism , Energy Metabolism/genetics , Neurons/metabolism , Proteasome Endopeptidase Complex/metabolism , Schizophrenia/metabolism , Ubiquitin/metabolism , Analysis of Variance , Bipolar Disorder/genetics , Bipolar Disorder/metabolism , Case-Control Studies , DNA, Mitochondrial/analysis , Dentate Gyrus/pathology , Depressive Disorder, Major/genetics , Depressive Disorder, Major/metabolism , Electron Transport Chain Complex Proteins/genetics , Electron Transport Chain Complex Proteins/metabolism , Gene Expression Profiling , Humans , Hydrogen-Ion Concentration , Neurons/pathology , Oligonucleotide Array Sequence Analysis , Proteasome Endopeptidase Complex/genetics , Schizophrenia/genetics , Severity of Illness Index , Ubiquitin/genetics
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