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1.
Nature ; 591(7849): 288-292, 2021 03.
Article in English | MEDLINE | ID: mdl-33658715

ABSTRACT

The evolutionarily conserved target of rapamycin (TOR) kinase acts as a master regulator that coordinates cell proliferation and growth by integrating nutrient, energy, hormone and stress signals in all eukaryotes1,2. Research has focused mainly on TOR-regulated translation, but how TOR orchestrates the global transcriptional network remains unclear. Here we identify ethylene-insensitive protein 2 (EIN2), a central integrator3-5 that shuttles between the cytoplasm and the nucleus, as a direct substrate of TOR in Arabidopsis thaliana. Glucose-activated TOR kinase directly phosphorylates EIN2 to prevent its nuclear localization. Notably, the rapid global transcriptional reprogramming that is directed by glucose-TOR signalling is largely compromised in the ein2-5 mutant, and EIN2 negatively regulates the expression of a wide range of target genes of glucose-activated TOR that are involved in DNA replication, cell wall and lipid synthesis and various secondary metabolic pathways. Chemical, cellular and genetic analyses reveal that cell elongation and proliferation processes that are controlled by the glucose-TOR-EIN2 axis are decoupled from canonical ethylene-CTR1-EIN2 signalling, and mediated by different phosphorylation sites. Our findings reveal a molecular mechanism by which a central signalling hub is shared but differentially modulated by diverse signalling pathways using distinct phosphorylation codes that can be specified by upstream protein kinases.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/growth & development , Arabidopsis/metabolism , Cell Nucleus/metabolism , Phosphatidylinositol 3-Kinases/metabolism , Plant Development , Receptors, Cell Surface/metabolism , Signal Transduction , Arabidopsis/cytology , Arabidopsis/genetics , Catalytic Domain , DNA-Binding Proteins/metabolism , Ethylenes/metabolism , Glucose/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Meristem/metabolism , Phosphorylation , Plant Growth Regulators/metabolism , Protein Kinases/metabolism , Substrate Specificity , Transcription Factors/metabolism , Transcriptome
2.
Nanotechnology ; 32(14): 14LT01, 2021 Apr 02.
Article in English | MEDLINE | ID: mdl-33316794

ABSTRACT

The n+-base width of a two-terminal vertical thyristor fabricated with n++(top-emitter)-p+(base)-n+(base)-p++(bottom-emitter) epitaxial Si layers was designed to produce a cross-point memory cell without a selector. Both the latch-up and latch-down voltages increased linearly with the n+-base width, but the voltage increase slope of the latch-up was 2.6 times higher than that of the latch-down, and the memory window increased linearly with the n+-base width. There was an optimal n+-base width that satisfied cross-point memory cell operation; i.e. ∼180 nm, determined by confirming that the memory window principally determined the condition of operation as a cross-point memory cell (i.e. one half of the latch-up voltage being less than the latch-down voltage and a sufficient voltage difference existing between the latch-up and latch-down voltages). The vertical thyristor designed with the optimal n+-base width produced write/erase endurance cycles of ∼109 by sustaining a memory margin (I on /I off ) of 102, and the cross-point memory cell array size of 1024 K sustained a sensing margin of 99 %, which is comparable with that of current dynamic random-access memory (DRAM). In addition, in the cross-point memory cell array, a ½ bias scheme (i.e. a memory array size of 1024 K for 0.02 W of power consumption) resulted in lower power consumption than a [Formula: see text] bias scheme (i.e. a memory array size of 256 K for 0.02 W of power consumption).

3.
Plant Physiol ; 179(4): 1810-1821, 2019 04.
Article in English | MEDLINE | ID: mdl-30692220

ABSTRACT

DNA methylation plays an important role in diverse developmental processes in many eukaryotes, including the response to environmental stress. Abscisic acid (ABA) is a plant hormone that is up-regulated under stress. The involvement of DNA methylation in the ABA response has been reported but is poorly understood. DNA demethylation is a reverse process of DNA methylation and often induces structural changes of chromatin leading to transcriptional activation. In Arabidopsis (Arabidopsis thaliana), active DNA demethylation depends on the activity of REPRESSOR OF SILENCING 1 (ROS1), which directly excises 5-methylcytosine from DNA. Here we showed that ros1 mutants were hypersensitive to ABA during early seedling development and root elongation. Expression levels of some ABA-inducible genes were decreased in ros1 mutants, and more than 60% of their proximal regions became hypermethylated, indicating that a subset of ABA-inducible genes are under the regulation of ROS1-dependent DNA demethylation. Notable among them is NICOTINAMIDASE 3 (NIC3) that encodes an enzyme that converts nicotinamide to nicotinic acid in the NAD+ salvage pathway. Many enzymes in this pathway are known to be involved in stress responses. The nic3 mutants display hypersensitivity to ABA, whereas overexpression of NIC3 restores normal ABA responses. Our data suggest that NIC3 is responsive to ABA but requires ROS1-mediated DNA demethylation at the promoter as a prerequisite to transcriptional activation. These findings suggest that ROS1-induced active DNA demethylation maintains the active state of NIC3 transcription in response to ABA.


Subject(s)
Abscisic Acid/metabolism , Arabidopsis Proteins/metabolism , DNA Demethylation , Nuclear Proteins/physiology , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Arabidopsis Proteins/physiology , DNA Methylation , Epigenomics , Gene Expression Regulation, Plant , Metabolic Networks and Pathways/genetics , Nicotinamidase/genetics , Nicotinamidase/metabolism , Nuclear Proteins/genetics , Nuclear Proteins/metabolism
4.
Nanotechnology ; 30(3): 035205, 2019 Jan 18.
Article in English | MEDLINE | ID: mdl-30444725

ABSTRACT

Thyristor random access memory without a capacitor has been highlighted for its significant potential to replace current dynamic random access memory. We fabricated a two-terminal (2-T) thyristor by wet chemical etching techniques on n+-p-n-p+ silicon epitaxial layers, which have the proper thicknesses and carrier concentrations, as provided by technology computer-aided design simulation. The etched features such as etch rate, surface roughness, and morphologies, in a potassium hydroxide (KOH) and an isotropic etchant, were compared. The type of silicon etchant strongly affected the etched shapes of the side wall and therefore critically influenced the device performance with varying turn-on voltages. The turn-on voltage of thyristor fabricated with a KOH solution showed a consistent tendency of operation voltage in the range of 2.2-2.5 V regardless of the cell size, while the thyristor formulated with isotropic etchant had an operation voltage which increased from about 2.3-4.4 V as the device dimension decreased from 200 µm to 10 µm. The optimized 2-T thyristor showed a memory window of about 2 V, a nearly zero-subthreshold swing, and a current on-off ratio of about 104-105.

5.
Plant Signal Behav ; 13(2): e1432955, 2018 02 01.
Article in English | MEDLINE | ID: mdl-29381447

ABSTRACT

To overcome high temperature stress, plants have developed transcriptional cascades which express a large amount of chaperone proteins called heat shock proteins (HSPs). In our recent publication, we reported that STABILIZED1, as an U5-snRNP-interacting protein, is involved in the splicing of heat shock factor (HSF) and HSP transcripts during high temperature stress. This indicates that not only transcriptional regulation, but also post-transcriptional regulation by STA1, is essential for the full activation of HSF-HSP cascades and for thermotolerance. Here, we observed that the splicing of HSP transcripts was induced independent of STA1 at room temperature after heat acclimation, indicating that STA1 acts as a high temperature-specific splicing factor for the splicing of HSP transcripts. Our findings suggest the molecular mechanism for how HSF and HSP transcripts are spliced well under high temperature stress that blocks the splicing of overall transcripts.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Nuclear Proteins/metabolism , RNA Splicing/genetics , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Heat-Shock Response/genetics , Heat-Shock Response/physiology , Nuclear Proteins/genetics
6.
Sci Rep ; 7(1): 3193, 2017 06 09.
Article in English | MEDLINE | ID: mdl-28600557

ABSTRACT

Aging of living organisms is governed by intrinsic developmental programs, of which progression is often under the regulation of their cellular energy status. For example, calorie restriction is known to slow down aging of heterotrophic organisms from yeasts to mammals. In autotrophic plants cellular energy deprivation by perturbation of photosynthesis or sugar metabolism is also shown to induce senescence delay. However, the underlying molecular and biochemical mechanisms remain elusive. Our plant cell-based functional and biochemical assays have demonstrated that SNF1-RELATED KINASE1 (SnRK1) directly interacts, phosphorylates, and destabilizes the key transcription factor ETHYLENE INSENSITIVE3 (EIN3) in senescence-promoting hormone ethylene signaling. Combining chemical manipulation and genetic validation using extended loss-of-function mutants and gain-of-function transgenic lines, we further revealed that a SnRK1 elicitor, 3-(3,4-dichlorophenyl)-1,1-dimethylurea enables to slow down senescence-associated leaf degreening through the regulation of EIN3 in Arabidopsis. Our findings enlighten that an evolutionary conserved cellular energy sensor SnRK1 plays a role in fine-tuning of organ senescence progression to avoid sudden death during the last step of leaf growth and development.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis/genetics , Energy Metabolism/genetics , Plant Leaves/genetics , Protein Serine-Threonine Kinases/genetics , Aging/genetics , Arabidopsis/growth & development , Arabidopsis Proteins/metabolism , Ethylenes/metabolism , Gene Expression Regulation, Plant/genetics , Phosphorylation , Plant Leaves/growth & development , Plant Leaves/metabolism , Promoter Regions, Genetic , Protein Binding , Protein Serine-Threonine Kinases/metabolism , Signal Transduction/genetics
7.
Sci Rep ; 7(1): 2767, 2017 06 05.
Article in English | MEDLINE | ID: mdl-28584283

ABSTRACT

For photoautotrophic plants, light-dependent photosynthesis plays an important role in organismal growth and development. Under light, Arabidopsis hypocotyl growth is promoted by the phytohormone ethylene. Despite well-characterized ethylene signaling pathways, the functions of light in the hormone-inducible growth response still remain elusive. Our cell-based functional and plant-system-based genetic analyses with biophysical and chemical tools showed that a chemical blockade of photosystem (PS) II activity affects ethylene-induced hypocotyl response under light. Interestingly, ethylene responsiveness modulates PSII activity in retrospect. The lack of ethylene responsiveness-inducible PSII inefficiency correlates with the induction of AKIN10 expression. Consistently, overexpression of AKIN10 in transgenic plants suppresses ethylene-inducible hypocotyl growth promotion under illumination as in other ethylene-insensitive mutants. Our findings provide information on how ethylene responsiveness-dependent photosynthetic activity controls evolutionarily conserved energy sensor AKIN10 that fine-tunes EIN3-mediated ethylene signaling responses in organ growth under light.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Ethylenes/metabolism , Gene Expression Regulation, Plant , Photosynthesis , Photosystem II Protein Complex/genetics , Plant Growth Regulators/metabolism , Protein Serine-Threonine Kinases/genetics , Protein Serine-Threonine Kinases/metabolism , Alleles , Energy Metabolism , Gene Deletion , Genotype , Light , Phenotype , Photochemical Processes , Photosystem II Protein Complex/metabolism , Plant Development
8.
Plant Physiol ; 173(4): 2370-2382, 2017 04.
Article in English | MEDLINE | ID: mdl-28223317

ABSTRACT

High-temperature stress often leads to differential RNA splicing, thus accumulating different types and/or amounts of mature mRNAs in eukaryotic cells. However, regulatory mechanisms underlying plant precursor mRNA (pre-mRNA) splicing in the environmental stress conditions remain elusive. Herein, we describe that a U5-snRNP-interacting protein homolog STABILIZED1 (STA1) has pre-mRNA splicing activity for heat-inducible transcripts including HEAT STRESS TRANSCRIPTION FACTORs and various HEAT SHOCK PROTEINs for the establishment of heat stress tolerance in Arabidopsis (Arabidopsis thaliana). Our cell-based splicing reporter assay demonstrated STA1 acts on pre-mRNA splicing for specific subsets of stress-related genes. Cellular reconstitution of heat-inducible transcription cascades supported the view that STA1-dependent pre-mRNA splicing plays a role in DREB2A-dependent HSFA3 expression for heat-responsive gene expression. Further genetic analysis with a loss-of-function mutant sta1-1, STA1-expressing transgenic plants in Col background, and STA1-expressing transgenic plants in the sta1-1 background verified that STA1 is essential in expression of necessary genes including HSFA3 for two-step heat stress tolerance in plants. However, constitutive overexpression of the cDNA version of HSFA3 in the sta1-1 background is unable to execute plant heat stress tolerance in sta1-1 Consistently our global target analysis of STA1 showed that its splicing activity modulates a rather broad range of gene expression in response to heat treatment. The findings of this study reveal that heat-inducible STA1 activity for pre-mRNA splicing serves as a molecular regulatory mechanism underlying the plant stress tolerance to high-temperature stress.


Subject(s)
Arabidopsis Proteins/genetics , Gene Expression Regulation, Plant , Nuclear Proteins/genetics , RNA Precursors/genetics , RNA Splicing , Thermotolerance/genetics , Arabidopsis/genetics , Hot Temperature , Models, Genetic , Mutation , Plants, Genetically Modified , Reverse Transcriptase Polymerase Chain Reaction , Stress, Physiological
9.
Plant J ; 84(6): 1192-205, 2015 Dec.
Article in English | MEDLINE | ID: mdl-26576746

ABSTRACT

Photomorphogenesis is an essential program in plant development. This process is effected by the balanced cooperation of many factors under light and dark conditions. In a previous study, we showed that MYB hypocotyl elongation-related (MYBH) is involved in cell elongation. To expand our understanding of MYBH function, we performed a yeast two-hybrid assay and identified an MYB-like Domain transcription factor (MYBD). In this study, we investigated the function of MYBD, which is an MYBH homolog involved in anthocyanin accumulation. MYBD expression increased in response to light or cytokinin, and MYBD enhanced anthocyanin biosynthesis via repression of MYBL2, which encodes a transcription factor that has a negative effect on this process. In addition, MYBD binding in vivo to the MYBL2 promoter and the lower level of histone H3K9 acetylation at the upstream region of MYBL2 in MYBD over-expressing plants in comparison with wild-type plants imply that MYBD represses MYBL2 expression via an epigenetic mechanism. HY5 directly binds to the MYBD promoter, which indicates that MYBD acts on HY5-downstream in light- or cytokinin-triggered signaling pathways, leading to anthocyanin accumulation. Our results suggest that, although MYBD and MYBH are homologs, they act in opposite ways during plant photomorphogenesis, and these functions should be examined in further studies.


Subject(s)
Anthocyanins/metabolism , Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Basic-Leucine Zipper Transcription Factors/metabolism , DNA-Binding Proteins/metabolism , Gene Expression Regulation, Plant/physiology , Nuclear Proteins/metabolism , Repressor Proteins/metabolism , Transcription Factors/metabolism , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Basic-Leucine Zipper Transcription Factors/genetics , Cytokinins , DNA-Binding Proteins/genetics , Down-Regulation , Light , Nuclear Proteins/genetics , Promoter Regions, Genetic , Protein Binding , Repressor Proteins/genetics , Transcription Factors/genetics
10.
Front Plant Sci ; 6: 614, 2015.
Article in English | MEDLINE | ID: mdl-26300907

ABSTRACT

The core components of ABA-dependent gene expression signaling have been identified in Arabidopsis and rice. This signaling pathway consists of four major components; group A OsbZIPs, SAPKs, subclass A OsPP2Cs and OsPYL/RCARs in rice. These might be able to make thousands of combinations through interaction networks resulting in diverse signaling responses. We tried to characterize those gene functions using transient gene expression for rice protoplasts (TGERP) because it is instantaneous and convenient system. Firstly, in order to monitor the ABA signaling output, we developed reporter system named pRab16A-fLUC which consists of Rab16A promoter of rice and luciferase gene. It responses more rapidly and sensitively to ABA than pABRC3-fLUC that consists of ABRC3 of HVA1 promoter in TGERP. We screened the reporter responses for over-expression of each signaling components from group A OsbZIPs to OsPYL/RCARs with or without ABA in TGERP. OsbZIP46 induced reporter most strongly among OsbZIPs tested in the presence of ABA. SAPKs could activate the OsbZIP46 even in the ABA independence. Subclass A OsPP2C6 and -8 almost completely inhibited the OsbZIP46 activity in the different degree through the SAPK9. Lastly, OsPYL/RCAR2 and -5 rescued the OsbZIP46 activity in the presence of SAPK9 and OsPP2C6 dependent on ABA concentration and expression level. By using TGERP, we could characterize successfully the effects of ABA dependent gene expression signaling components in rice. In conclusion, TGERP represents very useful technology to study systemic functional genomics in rice or other monocots.

11.
Plant Cell Rep ; 34(9): 1605-14, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26021844

ABSTRACT

KEY MESSAGE: Arabidopsis BIK1 negatively regulates EIN3-depedent gene expression as an immediate cellular response. BIK1 localizes to the plasma membrane and its autophosphorylation and kinase activity involves in EIN3 repression. BOTRYTIS INDUCED KINASE1 (BIK1) is a multifunctional receptor-like kinase that involves in ethylene-mediated plant defense signaling. The loss of function BIK1 becomes insensitive to ethylene, but it still accumulates a higher level of ETHYLENE INSENSITIVE3 (EIN3) that serves as the key transcription activator in ethylene signaling. To unequivocally elucidate BIK1 function on EIN3 regulation in ethylene signaling, we took a combined approach of transient expression assay and stable expression analysis of BIK1. In our cell-based functional assay BIK1 destabilized EIN3 and down-regulated EIN3-dependent transcription. Membrane localization and autophosphorylation of BIK1 were required for full repression of EIN3 function, but its kinase activity potential compromised such regulatory action. Consistently, the analysis of transgenic plants verified BIK1 function on EIN3 repression. Our findings have clarified that autophosphorylated BIK1 in the plasma membrane negatively regulates EIN3-dependent gene expression. Thus, ethylene insensitivity in bik1 appears to be an indirect or a feedback long-term response.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/genetics , Gene Expression Regulation, Plant , Nuclear Proteins/metabolism , Protein Serine-Threonine Kinases/metabolism , Transcription Factors/metabolism , Cell Membrane/metabolism , DNA-Binding Proteins , Phosphorylation , Plants, Genetically Modified , Protein Stability , Protein Transport , Repressor Proteins/metabolism , Subcellular Fractions/metabolism , Transcription, Genetic
12.
PLoS Genet ; 11(3): e1004973, 2015 Mar.
Article in English | MEDLINE | ID: mdl-25730098

ABSTRACT

Plant growth depends on stem cell niches in meristems. In the root apical meristem, the quiescent center (QC) cells form a niche together with the surrounding stem cells. Stem cells produce daughter cells that are displaced into a transit-amplifying (TA) domain of the root meristem. TA cells divide several times to provide cells for growth. SHORTROOT (SHR) and SCARECROW (SCR) are key regulators of the stem cell niche. Cytokinin controls TA cell activities in a dose-dependent manner. Although the regulatory programs in each compartment of the root meristem have been identified, it is still unclear how they coordinate one another. Here, we investigate how PHABULOSA (PHB), under the posttranscriptional control of SHR and SCR, regulates TA cell activities. The root meristem and growth defects in shr or scr mutants were significantly recovered in the shr phb or scr phb double mutant, respectively. This rescue in root growth occurs in the absence of a QC. Conversely, when the modified PHB, which is highly resistant to microRNA, was expressed throughout the stele of the wild-type root meristem, root growth became very similar to that observed in the shr; however, the identity of the QC was unaffected. Interestingly, a moderate increase in PHB resulted in a root meristem phenotype similar to that observed following the application of high levels of cytokinin. Our protoplast assay and transgenic approach using ARR10 suggest that the depletion of TA cells by high PHB in the stele occurs via the repression of B-ARR activities. This regulatory mechanism seems to help to maintain the cytokinin homeostasis in the meristem. Taken together, our study suggests that PHB can dynamically regulate TA cell activities in a QC-independent manner, and that the SHR-PHB pathway enables a robust root growth system by coordinating the stem cell niche and TA domain.


Subject(s)
Arabidopsis Proteins/genetics , Arabidopsis/genetics , Homeodomain Proteins/genetics , Meristem/genetics , Stem Cell Niche/genetics , Transcription Factors/genetics , Arabidopsis/growth & development , Arabidopsis Proteins/biosynthesis , Arabidopsis Proteins/metabolism , Cell Division/genetics , Cytokinins/genetics , Cytokinins/metabolism , DNA-Binding Proteins/genetics , Gene Expression Regulation, Plant , Homeodomain Proteins/biosynthesis , Homeostasis , Meristem/growth & development , Phenotype , Plant Roots/genetics , Plant Roots/growth & development , Plants, Genetically Modified/growth & development , Transcription Factors/metabolism
13.
Biochem Biophys Res Commun ; 457(2): 213-20, 2015 Feb 06.
Article in English | MEDLINE | ID: mdl-25545061

ABSTRACT

AN1/A20-like Zinc finger family proteins are evolutionarily conserved regulatory components in eukaryotic signaling circuits. In Arabidopsis thaliana, the AN1/A20 Zinc finger family is encoded as 14 members in the genome and collectively referred to as stress-associated proteins (SAPs). Here we described AtSAP5 localized to the nucleus, and played a role in heat-responsive gene regulation together with MBF1c. Seedling survival assay of sap5 and mbf1c demonstrated consistent effects of AtSAP5 and MBF1C in response to two-step heat treatment, supporting their function in heat stress tolerance. Our findings yield an insight in A20/AN1-like Zinc finger protein AtSAP5 functions in plant adaptability under high temperature.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Conserved Sequence , Evolution, Molecular , Hot Temperature , Stress, Physiological , Zinc Fingers , Adaptation, Physiological/genetics , Arabidopsis/genetics , Arabidopsis Proteins/chemistry , Cell Nucleus/metabolism , Gene Expression Regulation, Plant , Genes, Plant , Protein Binding , Protein Transport , Stress, Physiological/genetics , Trans-Activators/metabolism , Transcription, Genetic , Ubiquitin-Protein Ligases/chemistry , Ubiquitin-Protein Ligases/metabolism
14.
Plant Cell Environ ; 37(10): 2303-12, 2014 Oct.
Article in English | MEDLINE | ID: mdl-24890857

ABSTRACT

Terrestrial plants are exposed to complex stresses of high salt-induced abscisic acid (ABA) and submergence-induced hypoxia when seawater floods fields. Many studies have investigated plant responses to individual stress conditions, but not so much for coupled or sequentially imposed stresses. We examined molecular regulatory mechanisms of gene expression underlying the cellular responses involved in crosstalk between salt and hypoxia stresses. Salt/ABA- and AtMYC2-dependent induction of a synthetic ABA-responsive element and the native RD22 promoters were utilized in our cell-based functional assays. Such promoter-based reporter induction was largely inhibited by hypoxia and hypoxia-inducible AKIN10 activity. Biochemical analyses showed that AKIN10 negatively modulates AtMYC2 protein accumulation via proteasome activity upon AKIN10 kinase activity-dependent protein modification. Further genetic analysis using transgenic plants expressing AKIN10 provided evidence that AKIN10 activity undermined AtMYC2-dependent salt tolerance. Our findings unravel a novel molecular interaction between the key signalling constituents leading crosstalk between salt and hypoxia stresses in Arabidopsis thaliana under the detrimental condition of submergence in saltwater.


Subject(s)
Adaptation, Physiological , Arabidopsis Proteins/metabolism , Arabidopsis/enzymology , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/metabolism , Oxygen/metabolism , Protein Serine-Threonine Kinases/metabolism , Stress, Physiological , Abscisic Acid/metabolism , Amino Acid Motifs , Arabidopsis/genetics , Arabidopsis/physiology , Arabidopsis Proteins/genetics , Basic Helix-Loop-Helix Leucine Zipper Transcription Factors/genetics , Gene Expression Regulation, Enzymologic , Gene Expression Regulation, Plant , Genes, Reporter , Models, Biological , Plant Growth Regulators/metabolism , Plants, Genetically Modified , Promoter Regions, Genetic/genetics , Protein Serine-Threonine Kinases/genetics , Recombinant Fusion Proteins , Salt Tolerance , Seawater/adverse effects , Sodium Chloride/pharmacology
15.
Methods Mol Biol ; 1171: 3-12, 2014.
Article in English | MEDLINE | ID: mdl-24908115

ABSTRACT

Mitogen-Activated Protein Kinase (MAPK) cascade is one of the main signaling components mediating abiotic and biotic stress and hormone information in plants. Plant MAPK study has been impeded with a genetic approach using a long-term phenotypic analysis in spite of the transient nature of the protein kinase signaling. Arabidopsis leaf mesophyll protoplasts provide a versatile resource for diverse cell-based assays to acquire immediate molecular and biochemical responses with transient expression of MAPK cascade components of interests. Thus, it is an attractive tool for a high-throughput functional analysis of Arabidopsis MAPK cascade signaling. However, transient expression in Arabidopsis mesophyll protoplast (TEAMP) system requires mastered skills for protoplast preparation and handling to achieve steady and stable data. Here, we have described two analytical methods for MAPK cascade signaling using TEAMP system.


Subject(s)
Arabidopsis/cytology , Arabidopsis/genetics , Gene Expression Profiling/methods , MAP Kinase Signaling System , Mesophyll Cells/cytology , Protoplasts/cytology , Protoplasts/metabolism , Arabidopsis/growth & development , Blotting, Western , Immunoprecipitation , Plant Proteins/metabolism
16.
Front Plant Sci ; 5: 733, 2014.
Article in English | MEDLINE | ID: mdl-25601870

ABSTRACT

The signaling of the plant hormone ethylene has been studied genetically, resulting in the identification of signaling components from membrane receptors to nuclear effectors. Among constituents of the hormone signaling pathway, functional links involving a putative mitogen-activated protein kinase kinase CONSTITUTIVE TRIPLE RESPONSE1 (CTR1) and a membrane transporter-like protein ETHYLENE INSENSITIVE2 (EIN2) have been missing for a long time. We now learn that EIN2 is cleaved and its C-terminal end moves to the nucleus upon ethylene perception at the membrane receptors, and then the C-terminal end of EIN2 in the nucleus supports EIN3-dependent ethylene-response gene expression. CTR1 kinase activity negatively controls the EIN2 cleavage process through direct phosphorylation. Despite the novel connection of CTR1 with EIN2 that explains a large portion of the missing links in ethylene signaling, our understanding still remains far from its completion. This focused review will summarize recent advances in the EIN3-dependent ethylene signaling mechanisms including CTR1-EIN2 functions with respect to EIN3 regulation and ethylene responses. This will also present several emerging issues that need to be addressed for the comprehensive understanding of signaling pathways of the invaluable plant hormone ethylene.

17.
FEBS Lett ; 587(12): 1773-8, 2013 Jun 19.
Article in English | MEDLINE | ID: mdl-23660402

ABSTRACT

We have characterized the function of a plant R2R3-MYB transcription factor, Arabidopsis thaliana MYB20 (AtMYB20). Transgenic plants overexpressing AtMYB20 (AtMYB20-OX) enhanced salt stress tolerance while repression lines (AtMYB20-SRDX) were more vulnerable to NaCl than wild-type plants. Following NaCl treatment, the expressions of ABI1, ABI2 and AtPP2CA, which encode type 2C serine/threonine protein phosphatases (PP2Cs) that act as negative regulators in abscisic acid (ABA) signaling, were suppressed in AtMYB20-OX but induced in AtMYB20-SRDX. The electrophoretic mobility shift assay results revealed that AtMYB20 binds to the promoter regions containing the MYB recognition sequence (TAACTG) and an ACGT core element of ABI1 and AtPP2CA. These findings suggest that AtMYB20 down-regulates the expression of PP2Cs, the negative regulator of ABA signaling, and enhances salt tolerance.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Phosphoprotein Phosphatases/genetics , Salt Tolerance/genetics , Transcription Factors/metabolism , Abscisic Acid/metabolism , Adaptation, Physiological/genetics , Arabidopsis/cytology , Arabidopsis/enzymology , Arabidopsis/genetics , Arabidopsis Proteins/genetics , Down-Regulation , Intracellular Space/metabolism , Plants, Genetically Modified , Promoter Regions, Genetic/genetics , Protein Phosphatase 2C , Protein Transport , Seedlings/genetics , Seedlings/physiology , Signal Transduction/genetics , Stress, Physiological/genetics , Transcription Factors/genetics
18.
Planta ; 237(5): 1379-91, 2013 May.
Article in English | MEDLINE | ID: mdl-23397192

ABSTRACT

We previously reported that a rare sugar D-allose, which is the D-glucose epimer at C3, inhibits the gibberellin-dependent responses such as elongation of the second leaf sheath and induction of α-amylase in embryo-less half seeds in rice (Fukumoto et al. 2011). D-Allose suppresses expressions of gibberellin-responsive genes downstream of SLR1 protein in the gibberellin-signaling through hexokinase (HXK)-dependent pathway. In this study, we discovered that D-allose induced expression of ABA-related genes including OsNCED1-3 and OsABA8ox1-3 in rice. Interestingly, D-allose also up-regulated expression of OsABF1, encoding a conserved bZIP transcription factor in ABA signaling, in rice. The D-allose-induced expression of OsABF1 was diminished by a hexokinase inhibitor, D-mannoheptulose (MNH). Consistently, D-allose also inhibited Arabidopsis growth, but failed to trigger growth retardation in the glucose-insensitive2 (gin2) mutant, which is a loss-of-function mutant of the glucose sensor AtHXK1. D-Allose activated AtABI5 expression in transgenic gin2 over-expressing wild-type AtHXK1 but not in gin2 over-expressing the catalytic mutant AtHXK1(S177A), indicating that the D-allose phosphorylation by HXK to D-allose 6-phosphate (A6P) is the first step for the up-regulation of AtABI5 gene expression as well as D-allose-induced growth inhibition. Moreover, overexpression of OsABF1 showed increased sensitivity to D-allose in rice. These findings indicated that the phosphorylation of D-allose at C6 by hexokinase is essential and OsABF1 is involved in the signal transduction for D-allose-induced growth inhibition.


Subject(s)
Glucose/metabolism , Glucose/pharmacology , Hexokinase/metabolism , Oryza/metabolism , Plant Proteins/metabolism , Gene Expression Regulation, Plant/drug effects , Hexokinase/genetics , Oryza/drug effects , Oryza/genetics , Phosphorylation , Plant Proteins/genetics
19.
Plant Cell Physiol ; 54(1): 155-67, 2013 Jan.
Article in English | MEDLINE | ID: mdl-23220690

ABSTRACT

Arabidopsis thaliana Cell Growth Defect factor 1 (Cdf1) has been implicated in promotion of proapoptotic Bax-like cell death via the induction of reactive oxygen species (ROS). Here we report a conserved function of a chloroplast-targeting Cdf-related gene Responsive to Senescence (CRS) using CRS overexpression and loss of function in plants as well as CRS heterologous expression in yeast. CRS expression was strongly induced in senescent leaves, suggesting its main functions during plant senescence. CRS expression in yeast mitochondria increased the ROS level and led to cell death in a manner similar to Cdf1. In whole plants, overexpression of CRS caused the loss of chlorophylls (Chls) and the rapid onset of leaf senescence, while the lack of CRS led to the delay of leaf senescence in a loss-of-function mutant, crs. The higher and lower accumulation of H(2)O(2) was correlated with early and late senescence in CRS-overexpressing and crs mutant plants, respectively. Furthermore, expression of senescence-related marker genes and metacaspase genes was induced in CRS-overexpressing plants in response to dark. Our findings suggest that CRS plays a key role in the leaf senescence process that accompanies H(2)O(2) accumulation resulting in cell death promotion.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/physiology , Plant Leaves/physiology , Arabidopsis/cytology , Arabidopsis Proteins/genetics , Base Sequence , Cell Death/genetics , Chloroplasts/genetics , Chloroplasts/metabolism , DNA-Binding Proteins/genetics , DNA-Binding Proteins/metabolism , Darkness , Gene Expression Regulation, Plant , Hydrogen Peroxide/metabolism , Molecular Sequence Data , Plant Leaves/cytology , Plants, Genetically Modified/genetics , Plants, Genetically Modified/metabolism , Promoter Regions, Genetic , Yeasts/cytology , Yeasts/genetics
20.
Plant Cell Physiol ; 54(2): 195-208, 2013 Feb.
Article in English | MEDLINE | ID: mdl-23220733

ABSTRACT

Anther formation and dehiscence are complex pivotal processes in reproductive development. The secondary wall thickening in endothecial cells of the anther is a known prerequisite for successful anther dehiscence. However, many gaps remain in our understanding of the regulatory mechanisms underlying anther dehiscence in planta, including a possible role for jasmonic acid (JA) and H(2)O(2) in secondary wall thickening of endothecial cells. Here, we report that the cystathionine ß-synthase domain-containing protein CBSX2 located in the chloroplast plays a critical role in thickening of the secondary cell walls of the endothecium during anther dehiscence in Arabidopsis. A T-DNA insertion mutant of CBSX2 (cbsx2) showed increased secondary wall thickening of endothecial cells and early anther dehiscence. Consistently, overexpression of CBSX2 resulted in anther indehiscence. Exogenous JA application induced secondary wall thickening and caused flower infertility in the cbsx2 mutant, whereas it partially restored fertility in the CBSX2-overexpressing lines lacking the wall thickening. CBSX2 directly modulated thioredoxin (Trx) in chloroplasts, which affected the level of H(2)O(2) and, consequently, expression of the genes involved in secondary cell wall thickening. Our findings have revealed that CBSX2 modulates the H(2)O(2) status, which is linked to the JA response and in turn controls secondary wall thickening of the endothecial cells in anthers for dehiscence to occur.


Subject(s)
Arabidopsis Proteins/metabolism , Cell Wall/enzymology , Cystathionine beta-Synthase/metabolism , Flowers/growth & development , Gene Expression Regulation, Developmental , Arabidopsis/enzymology , Arabidopsis/genetics , Arabidopsis/growth & development , Arabidopsis Proteins/genetics , Cell Wall/drug effects , Cell Wall/genetics , Chloroplasts/drug effects , Chloroplasts/enzymology , Chloroplasts/genetics , Cyclopentanes/pharmacology , Cystathionine beta-Synthase/genetics , DNA, Bacterial/genetics , DNA, Bacterial/metabolism , Flowers/enzymology , Flowers/genetics , Flowers/ultrastructure , Hydrogen Peroxide/metabolism , Lignin/metabolism , Microscopy, Electron, Scanning , Oxylipins/pharmacology , Phloroglucinol/metabolism , Plant Infertility , Plants, Genetically Modified/enzymology , Plants, Genetically Modified/genetics , Plants, Genetically Modified/growth & development , Protein Structure, Tertiary , Signal Transduction , Thioredoxins/genetics , Thioredoxins/metabolism , Two-Hybrid System Techniques
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