Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 26
Filter
1.
Cytogenet Genome Res ; 116(1-2): 12-7, 2007.
Article in English | MEDLINE | ID: mdl-17268172

ABSTRACT

Mice with recessive cataract, CXSD, show the first clinical symptoms of cataract at five weeks, with complete penetrance. We previously localized the cataract-causing lens rupture 2 gene (lr2) to mouse chromosome 14. In the process of positional cloning of the lr2 gene, we determined the genomic organization of the critical region, defined by D14Mit262 and D14Mit86, and compared it to recently published map information. In addition, mutational analysis using reverse transcription polymerase chain reaction (RT-PCR) followed by direct sequencing as well as quantitative realtime PCR (RQ-PCR) was performed to investigate Adam28 and Adamdec1 as lr2 candidate genes in this study. There was no mutation cosegregating with the phenotype of CXSD mice, which excluded these genes as the lr2 gene. Identification of more transcripts from this region and their mutation analyses are required to isolate the lr2 gene.


Subject(s)
ADAM Proteins/genetics , Cataract/genetics , Chromosome Mapping/methods , Genes/genetics , Genome , Sequence Tagged Sites , Animals , DNA Mutational Analysis , DNA Primers/chemistry , Gene Expression Regulation , Genes/physiology , Mice , Models, Genetic , Phenotype , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction
3.
J Biol Chem ; 276(50): 47100-6, 2001 Dec 14.
Article in English | MEDLINE | ID: mdl-11600497

ABSTRACT

Many Fas-expressing cells do not undergo cell death upon Fas stimulation. In the normal human diploid cell line GM6112, the addition of soluble Fas ligand (sFasL) leads to morphological signs of cell death in less than 1% of cells. Treatment of serum-starved GM6112 fibroblasts with sFasL resulted in a rapid and transient phosphorylation of ERK1/2 without a significant increase in JNK and p38 activities. Unless co-treated with the protein synthesis inhibitor anisomycin, sFasL did not show gene-inducing activity in cells maintained in complete medium. However, when cells were serum-starved for 4 days, treatment with sFasL alone induced interleukin-6 gene expression and, less strongly, interleukin-8 gene expression. Sensitization of the gene-inducing activity by serum starvation correlated with NF-kappaB activation by sFasL. Furthermore, we found that the expression of FADD and caspase-8 was significantly reduced in serum-starved cells, whereas the level of cFLIP remained unchanged. Transfection of GM6112 cells with the antisense caspase-8 expression construct sensitized cells toward sFasL-induced NF-kappaB-dependent reporter activation. Our results support the notion that a change in the ratio of cFLIP and caspase-8 may be responsible for turning on the Fas-activated NF-kappaB pathway, which otherwise is supplanted by the death-inducing pathway.


Subject(s)
Apoptosis , Arabidopsis Proteins , Crystallins/chemistry , Culture Media, Serum-Free/metabolism , Fibroblasts/metabolism , Gene Expression Regulation, Enzymologic , Intracellular Signaling Peptides and Proteins , Membrane Glycoproteins/metabolism , NF-kappa B/metabolism , Signal Transduction , Animals , Anisomycin/pharmacology , Blotting, Western , CASP8 and FADD-Like Apoptosis Regulating Protein , CHO Cells , Carrier Proteins/metabolism , Caspase 8 , Caspase 9 , Caspases/biosynthesis , Caspases/metabolism , Cell Line , Cell Nucleus/metabolism , Cricetinae , Culture Media, Serum-Free/pharmacology , Diploidy , Dose-Response Relationship, Drug , Down-Regulation , Enzyme Activation , Enzyme Precursors/metabolism , Fas Ligand Protein , Fatty Acid Desaturases/metabolism , Genes, Reporter , Glutathione Transferase/metabolism , Humans , Interleukin-6/biosynthesis , Interleukin-8/biosynthesis , Luciferases/metabolism , Mitogen-Activated Protein Kinase 1/metabolism , Mitogen-Activated Protein Kinase 3 , Mitogen-Activated Protein Kinases/metabolism , Oligonucleotides, Antisense/pharmacology , Phosphorylation , Protein Binding , Protein Kinase C/metabolism , Protein Synthesis Inhibitors/pharmacology , Time Factors , Transfection
4.
J Synchrotron Radiat ; 8(Pt 2): 599-601, 2001 Mar 01.
Article in English | MEDLINE | ID: mdl-11512864

ABSTRACT

New Co-doped-SiO2-sol pillared montmorillonite has been synthesized by interlayer hydrolysis and condensation of tetraethylorthosilicate (TEOS) in the presence of Co2+ ion using an organic template. The Co K-edge XANES and EXAFS analyses for the CoO-SiO2-PILC (before and after calcination) and for the references such as CoO and Co(OH)2 were performed in order to obtain electronic and local structural information of cobalt species, which may act as a catalytic active site for the selective reduction of NO(x), hydrodesulfurization, and Fischer-Tropsch reaction. According to the XANES spectra, the divalent cobalt ion is stabilized in an octahedral symmetry. The EXAFS result shows a significant change in local symmetry around cobalt ion upon calcination. The EXAFS fitting result before calcination shows that the cobalt species is in the form of hydroxide, with a small number of (Co-Co) pairs compared to the bulk Co(OH)2. After calcining at 550 degrees C, the first nearest neighbours were fitted to six oxygen atoms with two different distances, and the second and the third neighbours were fitted to two Si and one Co atoms. It is, therefore, reasonable to suggest a structure model, where the cobalt species on the SiO2 sol exists as a nano cluster of Co(OH)2 before calcination but transforms to a nanosized cobalt oxide covalently bound to the surface of SiO2 pillar after calcination.

5.
J Synchrotron Radiat ; 8(Pt 2): 782-4, 2001 Mar 01.
Article in English | MEDLINE | ID: mdl-11512930

ABSTRACT

The structural characterisation of SiO2/ZrO2 nano-sol particles, prepared by mixing SiO2 sol and aqueous solution of ZrOCl2 8H2O, has been carried out by in-situ XAS measurement at the Zr K-edge during condensation reaction. The detailed XANES features at the Zr K-edge of the mixed sol of SiO2/ZrO2 are compared with those of other references such as ZrO2, ZrOCl2 8H2O. BaZrO3, and ZrSiO4, and it becomes obvious that the Zr4+ ions are stabilised in an octahedral symmetry. The EXAFS result also indicates that each Zr atom is coordinated with six oxygen ones as the first nearest neighbour, where two oxygen atoms are from the linkage of (Si-O-Zr) at short distance, and four ones are from water molecules at long distance. As the condensation reaction proceeds, it is found that the number of oxygen atoms due to the formation of (Si-O-Zr) bond at short distance and the second neighbour of silicon atoms increase simultaneously. From the above EXAFS and XANES results, the structural and gelating models could be proposed, which is based on the octahedrally coordinated but distorted zirconium species attaching on the SiO2 sol surface.

6.
Br J Dermatol ; 145(1): 95-9, 2001 Jul.
Article in English | MEDLINE | ID: mdl-11453914

ABSTRACT

BACKGROUND: There are racial differences in the prevalence and types of androgenetic alopecia (AGA). There have been several reports on the prevalence and types of AGA in the general population of caucasians, but few studies on Koreans with samples of sufficient numbers have been reported. OBJECTIVES: To obtain a more precise estimate of the prevalence and types of AGA in Korean men and women and to compare the results with those in caucasians. METHODS: The prevalence and types of AGA were analysed in 10,132 Koreans (5531 men and 4601 women) who had visited the Health Examination Centre at Kyung Hee University Hospital for regular health examinations between December 1997 and July 1999. To classify the degree of hair loss for each subject, the Norwood classification was used in men and the Ludwig classification in women. For AGA in men, 'female pattern' was added to the Norwood classification. RESULTS: In Korean men, the prevalence of AGA (Norwood III or above) at all ages was 14.1%. It increased steadily with advancing age, but was lower than that of caucasians: 2.3% in the third decade, 4.0% in the fourth decade, 10.8% in the fifth decade, 24.5% in the sixth decade, 34.3% in the seventh decade and 46.9% over 70 years. Type III vertex involvement was the most common type in the third decade to the seventh decade; over 70 years, type VI was most common. A 'female pattern' was observed in 11.1% of cases. In Korean women, the prevalence of AGA (Ludwig I or above) at all ages was 5.6%. It also increased steadily with advancing age: 0.2% in the third decade, 2.3% in the fourth decade, 3.8% in the fifth decade, 7.4% in the sixth decade, 11.7% in the seventh decade and 24.7% over 70 years. Grade I was the most common type up to the sixth decade; over 60 years, grade I and II were similar in prevalence. Grade III (total baldness) was not observed. A family history of baldness was present in 48.5% of men and 45.2% of women with AGA. CONCLUSIONS: The prevalence of AGA in Korean men and women was lower than that in caucasians, as recorded in the literature. Korean men tend to have more frontal hairline preservation and show a more 'female pattern' of hair thinning than caucasians. Therefore, 'female pattern' should be added to the classification of AGA.


Subject(s)
Alopecia/ethnology , Adult , Age Distribution , Aged , Alopecia/genetics , Alopecia/pathology , Female , Humans , Korea/epidemiology , Male , Middle Aged , Prevalence , Severity of Illness Index , Sex Factors
7.
J Pept Res ; 58(5): 389-98, 2001 Nov.
Article in English | MEDLINE | ID: mdl-11892848

ABSTRACT

Histones, nuclear proteins that interact with DNA to form nucleosomes, are essential for both the regulation of transcription and the packaging of DNA within chromosomes. The N-terminal domain of histone H4 contains four acetylation sites at lysine residues and may play a separate role in chromatin structure from the remainder of the H4 chain. We performed circular dichroism and NMR characterization of both native (H4NTP) and acetylated (Ace-H4NTP) peptides containing N-terminal acetylation domain of histone H4 for various pH environments. Data from CD and NMR suggested that H4NTP exhibited a pH-dependent conformational change, whereas the Ace-H4NTP is insensitive to pH change. However, both peptides showed a defined structural form at acidic pH environments. The solution structure for Ace-H4NTP shows two structurally independent regions comprising residues of Leu10-Gly13 and Arg19-Leu22, demonstrating relatively well-defined turn-type structures. Our results suggest that N-terminal acetylated region of H4 prefers an extended backbone conformation at neutral pH, however, upon acetylation, the regions containing lysine residues induce structural transition, having defined structural form for its optimum function.


Subject(s)
Histones/chemistry , Saccharomyces cerevisiae Proteins , Acetyltransferases/metabolism , Arginine/chemistry , Chromatin/metabolism , Chromatography, High Pressure Liquid , Circular Dichroism , Glycine/chemistry , Histone Acetyltransferases , Histone Deacetylases/metabolism , Histones/metabolism , Hydrogen-Ion Concentration , Leucine/chemistry , Magnetic Resonance Spectroscopy , Models, Molecular , Peptide Biosynthesis , Peptides/chemistry , Protein Binding , Protein Conformation , Protein Structure, Tertiary
8.
J Biol Chem ; 273(40): 26130-7, 1998 Oct 02.
Article in English | MEDLINE | ID: mdl-9748294

ABSTRACT

The human DNA topoisomerase III (hTOP3) gene encodes a topoisomerase homologous to the Escherichia coli DNA topoisomerase I subfamily. To understand the mechanisms responsible for regulating hTOP3 expression, we have cloned the 5'-flanking region of the gene coding for the hTOP3 and analyzed its promoter activity. The presence of a single transcription initiation site was suggested by primer extension analysis. The hTOP3 gene promoter is moderately high in GC content and lacks a canonical TATA box, suggesting that hTOP3 promoter has overall similarity to promoters of a number of housekeeping genes. Examination of the promoter sequence indicated the presence of four Sp-1 consensus binding sequences and a putative initiator element surrounding the transcription initiation site. Transient expression of a luciferase reporter gene under the control of serially deleted 5'-flanking sequences revealed that the 52-base pair region from -326 to -275 upstream of the transcription initiation site includes a positive cis-acting element(s) for the efficient expression of hTOP3 gene. On the basis of gel mobility shift and supershift assays, we demonstrated that both YY1 and USF1 transcription factors can bind to the 52-base pair region. When HeLa cells were transiently transfected with a mutant construct which had disabled both YY1- and USF1-binding sites, the luciferase activity was greatly reduced, suggesting that these binding elements play a functional role in the basal activation of the hTOP3 promoter. Transfection studies with mutations that selectively impaired YY1 or USF1 binding suggested that both YY1 and USF1 function as activators in the hTOP3 promoter.


Subject(s)
DNA Topoisomerases, Type I/genetics , Promoter Regions, Genetic/genetics , Base Sequence , Binding Sites/genetics , Cloning, Molecular , DNA Mutational Analysis , DNA-Binding Proteins/metabolism , Erythroid-Specific DNA-Binding Factors , Gene Expression Regulation/genetics , Genes, Reporter/genetics , HeLa Cells , Humans , Molecular Sequence Data , Mutation/genetics , Nuclear Proteins/analysis , Podophyllin/analogs & derivatives , Podophyllin/genetics , Podophyllotoxin/analogs & derivatives , RNA, Messenger/analysis , Sequence Analysis, DNA , Transcription Factors/metabolism , Transcription, Genetic/genetics , Transfection/genetics , Upstream Stimulatory Factors , YY1 Transcription Factor
9.
J Biochem ; 124(1): 23-7, 1998 Jul.
Article in English | MEDLINE | ID: mdl-9644240

ABSTRACT

PTF/SNAPc is a multisubunit complex which specifically recognizes the PSEs of small nuclear RNA genes and activates transcription by RNA polymerase II or III. Here we describe the isolation and characterization of genomic clones encoding the human PTFgamma/SNAP43 gene. The gene spans approximately 29 kilobases, and is composed of 9 exons and 8 introns. A major transcription initiation site was identified at the position 58 base pairs upstream of the AUG translation initiator codon on primer extension analysis with HeLa mRNA. The 5' flanking region lacks a typical TATA box but contains many putative binding sites for various transcription factors, such as Sp1, Oct1, NF1, AP1, E2F, and USF. Immediately downstream of the transcription start site, we found a VNTR of a 17-bp sequence rich in (G+C). Four different alleles with two to five copies of the tandem repeat were identified in 10 individuals examined, indicating a high degree of variation at the PTFgamma/SNAP43 locus. In addition, the PTFgamma/SNAP43 gene was mapped to human chromosome 14q22 by fluorescence in situ hybridization.


Subject(s)
Chromosomes, Human, Pair 14 , RNA, Messenger/genetics , Transcription Factors/genetics , Base Sequence , Chromosome Mapping , DNA Probes , DNA, Complementary , Exons , HeLa Cells , Humans , Introns , Minisatellite Repeats , Molecular Sequence Data
10.
EMBO J ; 17(6): 1768-78, 1998 Mar 16.
Article in English | MEDLINE | ID: mdl-9501098

ABSTRACT

PTF (PSE-binding transcription factor) activates transcription of snRNA and related genes. We investigated its distribution in HeLa nuclei by immunofluorescence, and found it spread throughout the nucleoplasm in small foci. In some cells, PTF is also concentrated in one, or very few, discrete regions (diameter approximately 1.3 micron) that appear during G1 phase and disappear in S phase. Oct1, a transcription factor that interacts with PTF, is also enriched in these domains; RNA polymerase II, TBP and Sp1 are also present. Each domain typically contains 2 or 3 transcription 'factories' where Br-UTP is incorporated into nascent transcripts. Accordingly, we have christened this region the Oct1/PTF/transcription (OPT) domain. It colocalizes with some, but not all, PIKA domains. It is distinct from other nuclear domains, including coiled bodies, gemini bodies, PML bodies and the perinucleolar compartment. A small region on chromosome 6 (band 6p21) containing only approximately 30 Mbp DNA, and chromosomes 6 and 7, associate with the domain significantly more than other chromosomes. The domains may act like nucleoli to bring particular genes on specific chromosomes together to a region where the appropriate transcription and processing factors are concentrated, thereby facilitating the expression of those genes.


Subject(s)
Cell Nucleus/metabolism , Chromosomes, Human/metabolism , DNA-Binding Proteins , Homeodomain Proteins/metabolism , Transcription Factors/metabolism , Amanitins/pharmacology , Antigens, Nuclear , Cell Cycle/physiology , Cell Nucleus/chemistry , Dichlororibofuranosylbenzimidazole/pharmacology , HeLa Cells , Homeodomain Proteins/analysis , Host Cell Factor C1 , Humans , Nuclear Proteins/analysis , Nucleic Acid Synthesis Inhibitors/pharmacology , Octamer Transcription Factor-1 , RNA Polymerase II/analysis , Transcription Factors/analysis , Transcription, Genetic/physiology
11.
Mol Cells ; 7(6): 742-8, 1997 Dec 31.
Article in English | MEDLINE | ID: mdl-9509415

ABSTRACT

Insulin has pleiotropic effects on the regulation of cellular growth, differentiation, and metabolism. The biochemical events ultimately leading to cell proliferation after insulin treatment have been demonstrated in detail by numerous research groups. However, depending on cell types, it has been shown that insulin has various effects on cell proliferation. Therefore, we attempted to more critically evaluate the effect of insulin on cell proliferation in 3T3 L1 fibroblasts. In this study, we investigated insulin's effect on cell proliferation by using [3H]thymidine incorporation, flow cytometry, and cell counting. In 3T3 L1 fibroblasts studied in 0.5% serum, insulin induced a two-fold increase in [3H]thymidine incorporation over at 48 h, and the maximal rate of DNA synthesis was observed during 8-12 h incubation. The flow cytometric analysis also showed that insulin increased the cell population in the S phase. After insulin treatment for 48 h, cell numbers increased approximately 45% in comparison with 0.5% serum control. Cell division was found to occur only once in 60 h after staining 3T3 L1 fibroblasts with carboxyfluorescein diacetate succinimidyl ester (CFSE). Taken together, this data indicates that insulin stimulated the transit from the G0/G1 to S phase, progressed the cell cycle through the G2/M phase, and increased the cell number. However, under our experimental conditions, cells divided only once in 60 h in the presence of insulin.


Subject(s)
Cell Cycle/drug effects , Insulin/pharmacology , 3T3 Cells , Animals , Cell Count/drug effects , Cell Division/drug effects , DNA Replication/drug effects , Flow Cytometry , Fluoresceins/metabolism , Fluorescent Dyes , Interphase/physiology , Mice , Mitosis/drug effects , Mitosis/physiology , S Phase/physiology , Succinimides/metabolism
12.
Mol Cell Biol ; 16(10): 5419-26, 1996 Oct.
Article in English | MEDLINE | ID: mdl-8816454

ABSTRACT

The proximal sequence element (PSE)-binding transcription factor (PTF), which binds the PSE of both RNA polymerase II- and RNA polymerase III-transcribed mammalian small nuclear RNA (snRNA) genes, is essential for their transcription. We previously reported the purification of human PTF, a complex of four subunits, and the molecular cloning and characterization of PTF gamma and delta subunits. Here we describe the isolation and expression of a cDNA encoding PTF beta, as well as functional studies using anti-PTF beta antibodies. Native PTF beta, in either protein fractions or a PTF-Oct-1-DNA complex, can be recognized by polyclonal antibodies raised against recombinant PTF beta. Immunodepletion studies show that PTF beta is required for transcription of both classes of snRNA genes in vitro. In addition, immunoprecipitation analyses demonstrate that substantial and similar molar amounts of TATA-binding protein (TBP) and TFIIIB90 can weakly associate with PTF at low salt conditions, but this association is dramatically reduced at high salt concentrations. Along with our previous demonstration of both physical interactions between PTF gamma/PTF delta and TBP and the involvement of TFIIIB90 in the transcription of class III snRNA genes, these results are consistent with the notion that a TBP-containing complex related to TFIIIB is required for the transcription of class III snRNA genes, and acts through weak interaction with the four-subunit PTF.


Subject(s)
DNA-Binding Proteins/metabolism , RNA Polymerase II/metabolism , RNA Polymerase I/metabolism , RNA, Small Nuclear/genetics , Transcription Factors/metabolism , Transcription, Genetic , Amino Acid Sequence , B-Lymphocytes , Base Sequence , Cell Nucleus/metabolism , Cloning, Molecular , DNA-Binding Proteins/biosynthesis , DNA-Binding Proteins/chemistry , Escherichia coli , Gene Library , HeLa Cells , Humans , Immunoblotting , Kinetics , Macromolecular Substances , Molecular Sequence Data , Recombinant Proteins/metabolism , Transcription Factors/biosynthesis , Transcription Factors/chemistry
13.
J Nat Prod ; 59(10): 985-6, 1996 Oct.
Article in English | MEDLINE | ID: mdl-8984163

ABSTRACT

Three pigments of the guaiazulene class have been isolated from the gorgonian Calicogorgia granulosa. Structures of these compounds have been determined as guaiazulene, 2,2'- diguaiazulenylmethane, and a new compound, 2,2'-biguaiazulenyl, by combined chemical and spectroscopic methods. 2,2'-Biguaiazulenyl exhibited moderate antimicrobial activity.


Subject(s)
Anti-Infective Agents/isolation & purification , Cnidaria/chemistry , Sesquiterpenes/isolation & purification , Animals , Anti-Bacterial Agents , Anti-Infective Agents/pharmacology , Antifungal Agents/isolation & purification , Antifungal Agents/pharmacology , Azulenes , Bacillus subtilis/drug effects , Candida albicans/drug effects , Escherichia coli/drug effects , Microbial Sensitivity Tests , Sesquiterpenes/pharmacology , Sesquiterpenes, Guaiane
14.
Mol Cell Biol ; 16(2): 503-12, 1996 Feb.
Article in English | MEDLINE | ID: mdl-8552077

ABSTRACT

The major histocompatibility complex (MHC) class II Ea promoter is dependent on the presence of conserved upstream X and Y boxes and of initiator (Inr) sequences. In vitro transcription analysis of the Inr region with linker-scanning mutants pinpoints a functionally essential element that shows homology to the terminal deoxynucleotidyltransferase (TdT) Inr; contrary to the TdT Inr and other Inrs identified so far, the key sequence, between positions +5 and +12, is located within a transcribed area. Swapping the TdT sequence into the corresponding Ea position leads to a fivefold increase in transcription rate, without altering start site selection. Inr-binding proteins LBP-1/CP2 and TIP--a TdT Inr-binding protein unrelated to YY1--recognize the Ea Inr; they interact with overlapping yet distinct sequences around the Cap site, but their binding does not coincide with Ea Inr activity. A good correlation is, rather, found with binding of immunopurified holo-TFIID to this element. TFIID interacts both with Ea TATA-like and Inr sequences, but only the latter is functionally relevant. Unlike TBP, TFIID binds in the absence of TFIIA, indicating a stabilizing role for TBP-associated factors in Ea promoter recognition. Sequence comparison with other mouse and human MHC class II promoters suggests a common mechanism of start site(s) selection for the MHC class II gene family.


Subject(s)
Genes, MHC Class II , Promoter Regions, Genetic , Transcription Factors/metabolism , Animals , Base Sequence , Binding Sites , DNA Mutational Analysis , DNA-Binding Proteins/metabolism , Humans , Mice , Molecular Sequence Data , Phosphoproteins/metabolism , Point Mutation , Protein Binding , Transcription Factor TFIID , Transcription, Genetic , Viral Proteins/metabolism
15.
Mol Cell Biol ; 16(1): 1-9, 1996 Jan.
Article in English | MEDLINE | ID: mdl-8524284

ABSTRACT

The proximal sequence element (PSE)-binding transcription factor (PTF) specifically recognizes the PSEs of both RNA polymerase II- and RNA polymerase III-transcribed small nuclear RNA (snRNA) genes. We previously have shown that PTF purified from human HeLa cells is a multisubunit complex of four polypeptides designated PTF alpha, -beta, -gamma, and -delta. We now report the isolation and expression of cDNAs encoding PTF gamma and PTF delta, as well as functional studies with cognate antibodies that recognize the native PTF complex in HeLa extracts. Immunoprecipitation studies confirm that the four PTF subunits originally found to copurify during conventional chromatography indeed form a tightly associated complex; they further show that the PTF so defined, including the gamma and delta subunits specifically, is essential for transcription of both class II and class III snRNA genes. Immunoprecipitation assays also show a weak substoichiometric association of the TATA-binding protein (TBP) with PTF, consistent with the previous report of a PTF-related complex (SNAPc) containing substoichiometric levels of TBP and a component (SNAPc43) identical in sequence to the PTF gamma reported here. Glutathione S-transferase pulldown assays further indicate relatively strong direct interactions of both recombinant PTF gamma and PTF delta with TBP, consistent either with the natural association of TBP with PTF in a semistable TBP-TBP-associated factor complex or with possible functional interactions between PSE-bound PTF and TATA-bound TBP during promoter activation. In addition, we show that in extracts depleted of TBP and TBP-associated factors, transcription from the U1 promoter is restored by recombinant TBP but not by TFIID or TFIIIB, indicating that transcription of class II snRNA genes requires a TBP complex different from the one used for mRNA-encoding genes.


Subject(s)
DNA-Binding Proteins/metabolism , RNA, Small Nuclear/genetics , Transcription Factors/genetics , Transcription Factors/metabolism , Amino Acid Sequence , Animals , Antibodies , Base Sequence , Cloning, Molecular , DNA Primers/genetics , DNA, Complementary/genetics , HeLa Cells , Humans , Molecular Sequence Data , Protein Conformation , RNA Polymerase II/metabolism , RNA Polymerase III/genetics , Rabbits , Recombinant Proteins/genetics , Recombinant Proteins/immunology , TATA Box , TATA-Box Binding Protein , Transcription Factors/chemistry , Transcription, Genetic
16.
Mol Cell Biol ; 15(4): 2019-27, 1995 Apr.
Article in English | MEDLINE | ID: mdl-7891697

ABSTRACT

The proximal sequence element (PSE), found in both RNA polymerase II (Pol II)- and RNA Pol III-transcribed small nuclear RNA (snRNA) genes, is specifically bound by the PSE-binding transcription factor (PTF). We have purified PTF to near homogeneity from HeLa cell extracts by using a combination of conventional and affinity chromatographic methods. Purified PTF is composed of four polypeptides with apparent molecular masses of 180, 55, 45, and 44 kDa. A combination of preparative electrophoretic mobility shift and sodium dodecyl sulfate-polyacrylamide gel electrophoresis analyses has conclusively identified these four polypeptides as subunits of human PTF, while UV cross-linking experiments demonstrate that the largest subunit of PTF is in close contact with the PSE. The purified PTF activates transcription from promoters of both Pol II- and Pol III-transcribed snRNA genes in a PSE-dependent manner. In addition, we have investigated factor requirements in transcription of Pol III-dependent snRNA genes. We show that in extracts that have been depleted of TATA-binding protein (TBP) and associated factors, recombinant TBP restores transcription from U6 and 7SK promoters but not from the VAI promoter, whereas the highly purified TBP-TBP-associated factor complex TFIIIB restores transcription from the VAI but not the U6 or 7SK promoter. Furthermore, by complementation of heat-treated extracts lacking TFIIIC activity, we show that TFIIIC1 is required for transcription of both the 7SK and VAI genes, whereas TFIIIC2 is required only for transcription of the VAI gene. From these observations, we conclude (i) that PTF and TFIIIC2 function as gene-specific as gene-specific factors for PSE-and B-box-containing Pol III genes, respectively, (ii) that the form of TBP used by class III genes with upstream promoter elements differs from the from used by class III genes with internal promoters, and (iii) that TFIIIC1 is required for both internal and external Pol III promoters.


Subject(s)
RNA Polymerase III/metabolism , RNA Polymerase II/metabolism , RNA, Small Nuclear/biosynthesis , Transcription Factors, TFIII , Transcription Factors/metabolism , Transcription, Genetic , Base Sequence , DNA-Binding Proteins/metabolism , HeLa Cells , Humans , Models, Genetic , Molecular Sequence Data , Protein Binding , Protein Conformation , Regulatory Sequences, Nucleic Acid , Transcription Factors/isolation & purification
17.
J Biol Chem ; 270(5): 2274-83, 1995 Feb 03.
Article in English | MEDLINE | ID: mdl-7836461

ABSTRACT

The cellular factor, LBP-1, can repress HIV-1 transcription by preventing the binding of TFIID to the promoter. Here we have analyzed the effect of recombinant LBP-1 on HIV-1 transcription in vitro by using a "pulse-chase" assay. LBP-1 had no effect on initiation from a preformed preinitiation complex and elongation to position +13 ("pulse"). However, addition of LBP-1 after RNA polymerase was stalled at +13 strongly inhibited further elongation ("chase") by reducing RNA polymerase processivity. Severe mutations of the high affinity LBP-1 binding sites between -4 and +21 did not relieve the LBP-1-dependent block. However, LBP-1 could bind independently to upstream low affinity sites (-80 to -4), suggesting that these sites mediate the effect of LBP-1 on elongation. These results demonstrate a novel function of LBP-1, restricting HIV-1 transcription at the level of elongation. In addition, Tat was found to suppress the antiprocessivity effect of LBP-1 on HIV-1 transcription in nuclear extracts. These findings strongly suggest that LBP-1 may provide a natural mechanism for restricting the elongation of HIV-1 transcripts and that this may be a target for the action of Tat in enhancing transcription.


Subject(s)
DNA-Binding Proteins/physiology , DNA-Directed RNA Polymerases/metabolism , HIV-1/genetics , RNA, Viral/biosynthesis , Repressor Proteins/physiology , Base Sequence , Gene Expression Regulation, Viral , Gene Products, tat/metabolism , HeLa Cells , Humans , In Vitro Techniques , Molecular Sequence Data , Mutagenesis, Site-Directed , Promoter Regions, Genetic , Recombinant Proteins , Structure-Activity Relationship , TATA Box , Transcription Factors , Transcription, Genetic , tat Gene Products, Human Immunodeficiency Virus
18.
Mol Cell Biol ; 14(3): 1776-85, 1994 Mar.
Article in English | MEDLINE | ID: mdl-8114710

ABSTRACT

LBP-1 is a cellular protein which binds strongly to sequences around the human immunodeficiency virus type 1 (HIV-1) initiation site and weakly over the TATA box. We have previously shown that LBP-1 represses HIV-1 transcription by inhibiting the binding of TFIID to the TATA box. Four similar but distinct cDNAs encoding LBP-1 (LBP-1a, -b, -c, and -d) have been isolated. These are products of two related genes, and each gene encodes two alternatively spliced products. Comparison of the amino acid sequence of LBP-1 with entries in the available protein data bases revealed the identity of LBP-1c to alpha-CP2, an alpha-globin transcription factor. These proteins are also homologous to Drosophila melanogaster Elf-1/NTF-1, an essential transcriptional activator that functions during Drosophila embryogenesis. Three of the recombinant LBP-1 isoforms show DNA binding specificity identical to that of native LBP-1 and bind DNA as a multimer. In addition, antisera raised against recombinant LBP-1 recognize native LBP-1 from HeLa nuclear extract. Functional analyses in a cell-free transcription system demonstrate that recombinant LBP-1 specifically represses transcription from a wild-type HIV-1 template but not from an LBP-1 mutant template. Moreover, LBP-1 can function as an activator both in vivo and in vitro, depending on the promoter context. Interestingly, one isoform of LBP-1 which is missing the region of the Elf-1/NTF-1 homology is unable to bind DNA itself and, presumably through heteromer formation, inhibits binding of the other forms of LBP-1, suggesting that it may function as a dominant negative regulator.


Subject(s)
DNA-Binding Proteins/genetics , Gene Expression Regulation, Viral , HIV-1/genetics , Repressor Proteins/genetics , Transcription Factors/genetics , Amino Acid Sequence , Base Sequence , Binding Sites , Cloning, Molecular , DNA Primers/chemistry , Genes , HeLa Cells , Humans , Molecular Sequence Data , Recombinant Proteins , Restriction Mapping , Sequence Alignment , Sequence Homology, Amino Acid , Transcription, Genetic
19.
J Am Coll Nutr ; 12(6): 638-42, 1993 Dec.
Article in English | MEDLINE | ID: mdl-8294718

ABSTRACT

Hepatic fatty acid-binding protein (FABP) is one of several abundant proteins which may participate in fatty acid uptake and utilization. Using differential hybridization to screen for growth hormone-responsive gene products, a complementary deoxyribonucleic acid (cDNA) was isolated which proved to be a hepatic FABP cDNA fragment. Hypophysectomy caused a 60% reduction in hepatic FABP messenger ribonucleic acid (mRNA) levels in rat liver, and growth hormone administration to hypophysectomized rats resulted in restoration of the expression of hepatic FABP mRNA. Other pituitary hormones did not alter these changes in expression. The response to growth hormone occurred within 4 hours of administration. During development, expression of hepatic FABP mRNA in rat liver was low in late fetal life, with increases to 40% of adult values by day 2 of life. Significant increases to adult levels did not occur until after day 25, when weaning is essentially completed. Alteration of hepatic FABP mRNA expression by growth hormone in rat liver may be important in the complex regulation of fatty acid uptake and metabolism.


Subject(s)
Carrier Proteins/genetics , Gene Expression Regulation/drug effects , Liver/metabolism , Neoplasm Proteins , Nerve Tissue Proteins , RNA, Messenger/metabolism , Animals , Blotting, Northern , Fatty Acid-Binding Protein 7 , Fatty Acid-Binding Proteins , Growth Hormone/pharmacology , Hypophysectomy , Kinetics , Liver/embryology , Liver/growth & development , Male , Nucleic Acid Hybridization , Rats
20.
Mol Cell Biol ; 12(7): 3247-61, 1992 Jul.
Article in English | MEDLINE | ID: mdl-1535687

ABSTRACT

The promoters of both RNA polymerase II- and RNA polymerase III-transcribed small nuclear RNA (snRNA) genes contain an essential and highly conserved proximal sequence element (PSE) approximately 55 bp upstream from the transcription start site. In addition, the upstream enhancers of all snRNA genes contain binding sites for octamer-binding transcription factors (Octs), and functional studies have indicated that the PSE and octamer elements work cooperatively. The present study has identified and characterized a novel transcription factor (designated PTF) which specifically binds to the PSE sequence of both RNA polymerase II- and RNA polymerase III-transcribed snRNA genes. PTF binding is markedly potentiated by Oct binding to an adjacent octamer site. This potentiation is effected by Oct-1, Oct-2, or the conserved POU domain of these factors. In agreement with these results and despite the independent binding of Octs to the promoter, PTF and Oct-1 enhance transcription from the 7SK promoter in an interdependent manner. Moreover, the POU domain of Oct-1 is sufficient for significant in vitro activity in the presence of PTF. These results suggest that essential activation domains reside in PTF and that the potentiation of PTF binding by Octs plays a key role in the function of octamer-containing snRNA gene enhancers.


Subject(s)
RNA, Small Nuclear/genetics , Regulatory Sequences, Nucleic Acid/genetics , Transcription Factors/genetics , Base Sequence , Chromosome Mapping , DNA Probes/metabolism , DNA-Binding Proteins/genetics , Enhancer Elements, Genetic/genetics , Host Cell Factor C1 , Humans , Molecular Sequence Data , Octamer Transcription Factor-1 , Octamer Transcription Factor-2 , Promoter Regions, Genetic/genetics , RNA Polymerase II/genetics , RNA Polymerase III/genetics , Ribonucleoproteins/genetics , Ribonucleoproteins, Small Nuclear , Transcription Factors/isolation & purification , Transcription, Genetic
SELECTION OF CITATIONS
SEARCH DETAIL
...