Spratelloides atrofasciatus Schultz, 1943, a valid species of round herring (Clupeiformes: Clupeidae).

The western Pacific marine clupeoid fish, Spratelloides atrofasciatus Schultz, 1943, previously regarded as a synonym of S. gracilis (Temminck and Schlegel, 1846), is redescribed here as a valid species on the basis of the holotype and 115 non-type specimens collected from the Ryukyu Islands. Both S. atrofasciatus and S. gracilis are similar chiefly in having a midlateral band that does not fade anteriorly. S. atrofasciatus differs from Spratelloides gracilis in having fewer anal fin rays, pectoral fin rays, vertebrae and gillrakers. Spratelloides atrofasciatus also has a shorter head length, a shorter upper jaw length, a shorter snout length, a wider lateral band equal to the eye diameter; numerous black pigment spots on the inner side of the gill opening that are visible from the outside in preserved specimens (vs not visible in S. gracilis). The two species are sympatrically distributed in the Ryukyu Islands. Spratelloides atrofasciatus matures from 32 mm SL and grows to a known maximum size of 45mm SL, while S. gracilis matures from about 50 mm SL and grows to over 100 mm SL.

A review of the genus Pempheris (Perciformes, Pempheridae) of the Red Sea, with description of a new species.

Four species of the fish genus Pempheris are recognized for the Red Sea: P. adusta Bleeker, 1877; P. mangula Cuvier, 1829; P. nesogallica Cuvier in Cuvier & Valenciennes, 1831; and a new species P. tominagai. All are wide-ranging in the western Indian Ocean, and P. mangula has migrated via the Suez Canal to the eastern Mediterranean Sea. Morphological and genetic analysis of 15 species in this genus show that P. adusta, a widely distributed species, that can't be divided into different species, because of the continuity of morphologies and distribution, and lack of variance in genetics between Indian Ocean, Red Sea, and Pacific Ocean populations. This confirms that the two subspecies described by Randall et al. (2013) are both synonyms of P. adusta. Pempheris adusta is distinguished from other species by a blackish spot on pectoral fin base, pored lateral-line scales 56-64, scale rows above lateral line 4 1/2-6 1/2, distinct blackish band on outer edge of anal fin, and blackish band on posterior edge of caudal fin. Pempheris mangula was named by Cuvier (1829) in a footnote making reference to a drawing and short description in Russell (1803) of a Pempheris from southeast India, giving only the native name ''Mangula-Kutti'', and listing no specimen. The wide distribution of this species, from the Indian Ocean to the Red Sea is also demonstrated by morphological and genetic analysis. Thus, the specimen collected from southern India is herein designated as the neotype. This species is distinguished from other species by its huge eye, deep body, blackish tip of the dorsal fin, pored lateral-line scales 49-60, and scale rows above lateral line 4 1/2-5 1/2. The extant syntype of Kossmann & Räuber's P. rhomboidea is designated as the lectotype of the species; however, P. rhomboidea is a synonym of P. mangula. In addition, Kossmann & Räuber's Pempheris erythraea and P. russellii Day, 1888 are also synonyms of P. mangula. Of two existing syntypes of P. nesogallica from Mauritius, one is designated as the lectotype, the other is re-identified as P. mangula; P. nesogallica is presently known only from the southern Red Sea. This species has a similar morphology to P. mangula, but can be distinguished by a smaller eye than P. mangula, and lack irregular faint longitudinal light stripes on the body side. Pempheris tominagai are distinguished from P. schwenkii Bleeker 1855, formerly misidentified, by the form of posterior nostril, scale counts, color of caudal fin, and by a 2.1% mitochondrial DNA sequence divergence. 

Pempheris ufuagari sp. nov., a new species in the genus Pempheris (Perciformes, Pempheridae) from the oceanic islands of Japan.

Pempheris ufuagari sp. nov. is described based on 10 specimens, 143.9-196.8 mm in standard length, collected from Mi-nami Daito Island and Ogasawara Islands, which are oceanic islands of Japan. Pempheris ufuagari is characterized by a distinct black spot on the pectoral fin base, a bright yellow dorsal and caudal fin, and a blackish band on the outer margin of the anal fin. Pempheris oualensis also has a large body and a distinct black spot on the pectoral fin base, and forms mixed schools with P. ufuagari, but can be distinguished by the different fin coloration (dorsal and caudal fin brown or pale; no blackish band on anal fin margin), and the presence of a villiform tooth band extending outside the lips. Although P. otaitensis, which is found in French Polynesia and Samoa, has similar coloration as P. ufuagari, the latter has lower scale counts than those of the former species: pored lateral-line scales 62-71 (vs. 70-79); scale rows above lateral line 6 1/2-7 1/2 (vs. 8 1/2); predorsal scales 37-43 (vs. 44-48).

Cryptic diversity of the eel goby, genus Taenioides (Gobiidae: Amblyopinae), in Japan.

The eel goby, genus Taenioides (Gobiidae: Amblyopinae), inhabits muddy bottoms of estuaries or shallow areas of seas in the Indo-Pacific Ocean. Among congeners, T. cirratus ( Blyth, 1860 ) has been thought to be distributed in Japan, but taxonomic confusions remain as to which scientific names are applicable to Japanese Taenioides species, or more fundamentally, how many Taenioides species are distributed in Japan, due in part to the rarity of this group in museum collections and the morphological similarity among species. To clarify the species diversity of the genus Taenioides in Japan, we conducted phylogenetic analysis on the basis of partial mitochondrial DNA sequences and morphological observation of more than 100 specimens. As a result, four distinct species were distinguished from each other, on the basis of both genetic divergences (2.9-5.7%, 16S rRNA gene) and morphological differences (i.e., degree of development of dermal folds on the head, numbers of barbels and vertebrae). Although the identifications of four species need additional verifications, they were identified as T. anguillaris, T. snyderi, T. gracilis and T. cf. kentalleni, and the species name T. cirratus does not seem to be appropriate to any of four detected species. Museum collections indicate that the two species, which are distributed in the main islands of Japan, were collected frequently and treated as a single species. The other two were each collected only from a single locality of Okinawa Island in this study, of which one seems to be uncommon worldwide as well.

Comprehensive phylogeny of the family Sparidae (Perciformes: Teleostei) inferred from mitochondrial gene analyses.

Sparid fishes consist of approximately 115 species in 33 genera that are broadly distributed in tropical and temperate coastal waters. Although several phylogenetic analyses were conducted based on specific molecular markers, their classification remains unresolved. Here, we present the most comprehensive molecular phylogeny of the family Sparidae to date, based on cytochrome b (cyt-b) genes. We determined 18 sequences of sparids and conducted phylogenetic analyses among 72 individuals representing 66 sparids with 23 outgroup species. Phylogenetic trees were constructed according to partitioned Maximum Likelihood (ML) and Bayesian methods. The phylogenetic analyses were conducted on two different data sets (including all positions; RY-coding). The phylogenetic trees showed monophyly of the family Sparidae with a different taxon, centracanthid Spicara. The subfamilies in the Sparidae in all trees are non-monophyletic and do not agree with current classification of the subfamilies. The genera Acanthopagrus, Cheimerius, Dentex, Diplodus, Pagellus, Pagrus, and Spicara are also non-monophyletic and their classifications should be revised based on the phylogenetic relationships and reinvestigation of morphological characters. The sparids are divided into three major clades, A, B and C, respectively in the ML tree based on all codon positions, whereas clade C was paraphyletic in the other trees. The species in clade C are known to be present in the eastern Pacific to western Atlantic, whereas those in clades A and B are distributed in various oceanic regions. Some sub-clades in clades A and B consist of species that are distributed in defined local regions. We further investigated evolutionary patterns of 87 morphological characters by ancestral character-state reconstruction according to the parsimony criteria. The results suggested high evolutionary plasticity of the characters in sparids, indicating that it causes species-diversity and taxonomic confusion at various taxonomic levels, and that such convergent evolution may occur more frequently also in other coastal fishes.

Phylogenetic relationships and natural hybridization in rabbitfishes (Teleostei: Siganidae) inferred from mitochondrial and nuclear DNA analyses.

Phylogenetic relationships of rabbitfishes (the family Siganidae), ecologically important components as primary consumers in coral reef communities, were studied using mitochondrial cytochrome b gene and nuclear ITS1 (internal transcribed spacer 1) sequence analyses. The analyses of 19 out of 22 species known in the Western Pacific region revealed that siganids are genetically clustered into three major clades, which are characterized by some morphological and ecological traits. Between closely related species, such as Siganus guttatus-S. lineatus and S. virgatus-S. doliatus, and also between two morphs recognized in S. corallinus, small but discernible genetic differentiation was found, implying that the components of each pair are incipient species. On the other hand, between some species, such as S. fuscescens-S. canaliculatus and S. unimaculatus-S.vulpinus, individuals of the components of each pair were found to construct a genetic mosaic, suggesting that the components are genetic color morphs within a single biological species, respectively. Moreover, evidence from morphological characters, mtDNA, and nuclear DNA gave an inconsistent picture of identity and relationships for several individuals. They were regarded as hybrids or individuals with hybrid origin. Such instances were observed not only between closely related species, such as S. guttatus-S. lineatus, S. virgatus-S. doliatus, and two morphs (incipient species) in S. corallinus, respectively, but also between distantly related ones, such as S. corallinus-S. puellus. In fact, more than half of the species examined (11/20, when treating the two morphs in S. corallinus as independent species) were involved in hybridization. These suggest that hybridization is much more prevalent in marine fishes than previously assumed, and may have some relevance to their diversification.

DNA sequences identify numerous cryptic species of the vertebrate: a lesson from the gobioid fish Schindleria.

Schindleria (Gobioidei, Schindleriidae), believed to include one of the smallest and youngest reproducing vertebrates, is broadly distributed in the Indo-Pacific Oceans, inhabiting coral reef lagoons. They are all characterized by a reduced larval-like form, such as a slender translucent and scaleless body. The three nominal species recognized in the genus to date have been distinguished by only combination of dorsal and anal fin-ray counts, and the existence of some undescribed species has been suggested in Schindleria; thus a total picture of species composition of the genus is poorly known. Towards the disclosure of diversity of Schindleria, a molecular phylogenetic analysis using partial mitochondrial 16S rRNA sequences was conducted for specimens from the Ryukyu and Ogasawara Islands, Japan. This analysis showed clearly that as many as 21 genetically distinguishable species occurred within the geographical areas. The degree of species crypticness of "S. praematura" [15.0=15 (new cryptic species + known species)/1 (known species)] is higher than the values of well-known animal examples, such as the pan-mesopelagic bristlemouth fish Cyclothone alba (5.0) and the South American skipper butterfly Astraptes fulgerator (10.0). This discovery of many cryptic species in Schindleria suggests that the use of DNA sequences is necessary for species identification of such morphologically conserved taxa. Because molecular analyses should increase the number of hitherto unnamed and pseudonymous species, especially in tropical areas, it is proposed that DNA-based designation is necessary for such taxa in order to compile the full "species lists", although there is presently no consensus for the inclusion of DNA sequencing data in the formal descriptions of new species.