Attenuation of Methane Oxidation by Nitrogen Availability in Arctic Tundra Soils.

CH4 emission in the Arctic has large uncertainty due to the lack of mechanistic understanding of the processes. CH4 oxidation in Arctic soil plays a critical role in the process, whereby removal of up to 90% of CH4 produced in soils by methanotrophs can occur before it reaches the atmosphere. Previous studies have reported on the importance of rising temperatures in CH4 oxidation, but because the Arctic is typically an N-limited system, fewer studies on the effects of inorganic nitrogen (N) have been reported. However, climate change and an increase of available N caused by anthropogenic activities have recently been reported, which may cause a drastic change in CH4 oxidation in Arctic soils. In this study, we demonstrate that excessive levels of available N in soil cause an increase in net CH4 emissions via the reduction of CH4 oxidation in surface soil in the Arctic tundra. In vitro experiments suggested that N in the form of NO3- is responsible for the decrease in CH4 oxidation via influencing soil bacterial and methanotrophic communities. The findings of our meta-analysis suggest that CH4 oxidation in the boreal biome is more susceptible to the addition of N than in other biomes. We provide evidence that CH4 emissions in Arctic tundra can be enhanced by an increase of available N, with profound implications for modeling CH4 dynamics in Arctic regions.

Relationships between denitrification rates and functional gene abundance in a wetland: The roles of single- and multiple-species plant communities.

Wetland soil denitrification removes excess inorganic nitrogen (N) and prevents eutrophication in aquatic ecosystems. Wetland plants have been considered the key factors determining the capacity of wetland soil denitrification to remove N pollutants in aquatic ecosystems. However, the influences of various plant communities on wetland soil denitrification remain unknown. In the present study, we measured variations in soil denitrification under different herbaceous plant communities including single Phragmites karka (PK), single Paspalum thunbergia (PT), single Zizania latifolia (ZL), a mixture of Paspalum thunbergia plus Phragmites karka (PTPK), a mixture of Paspalum thunbergia plus Zizania latifolia (PTZL), and bare soil (CK) in the Estuary of Nantiaoxi River, the largest tributary of Qingshan Lake in Hangzhou, China. The soil denitrification rate was significantly higher in the surface (0-10 cm) than the subsurface (10-20 cm) layer. Wetland plant growth increased the soil denitrification rate by significantly increasing the soil water content, nitrate concentration, and ln(nirS) + ln(nirK). A structural equation model (SEM) showed that wetland plants indirectly regulated soil denitrification by altering the aboveground and belowground plant biomass, nitrate concentration, abundances of denitrifying functional genes, and denitrification potential. There was no significant difference in soil denitrification rates among PT, PK and ZL. The soil denitrification rate was significantly lower in PTZL than PTPK. Two-plant communities did not necessarily enhance the denitrification rate compared to single planting, the former had a greater competitiveness on N uptake and consequently reduced the amount of nitrate available for denitrification. As PTPK had the highest denitrification rate, co-planting P. thunbergia and P. karka could effectively improve N removal efficiency and help mitigate eutrophication in adjacent aquatic ecosystems. The results of this investigation provide useful information guiding the selection of appropriate wetland herbaceous plant species for wetland construction and the removal of N pollutants in aquatic ecosystems.

Non-native plant invasion can accelerate global climate change by increasing wetland methane and terrestrial nitrous oxide emissions.

Approximately 17% of the land worldwide is considered highly vulnerable to non-native plant invasion, which can dramatically alter nutrient cycles and influence greenhouse gas (GHG) emissions in terrestrial and wetland ecosystems. However, a systematic investigation of the impact of non-native plant invasion on GHG dynamics at a global scale has not yet been conducted, making it impossible to predict the exact biological feedback of non-native plant invasion to global climate change. Here, we compiled 273 paired observational cases from 94 peer-reviewed articles to evaluate the effects of plant invasion on GHG emissions and to identify the associated key drivers. Non-native plant invasion significantly increased methane (CH4 ) emissions from 129 kg CH4 ha-1  year-1 in natural wetlands to 217 kg CH4 ha-1  year-1 in invaded wetlands. Plant invasion showed a significant tendency to increase CH4 uptakes from 2.95 to 3.64 kg CH4 ha-1  year-1 in terrestrial ecosystems. Invasive plant species also significantly increased nitrous oxide (N2 O) emissions in grasslands from an average of 0.76 kg N2 O ha-1  year-1 in native sites to 1.35 kg N2 O ha-1  year-1 but did not affect N2 O emissions in forests or wetlands. Soil organic carbon, mean annual air temperature (MAT), and nitrogenous deposition (N_DEP) were the key factors responsible for the changes in wetland CH4 emissions due to plant invasion. The responses of terrestrial CH4 uptake rates to plant invasion were mainly driven by MAT, soil NH4 + , and soil moisture. Soil NO3 - , mean annual precipitation, and N_DEP affected terrestrial N2 O emissions in response to plant invasion. Our meta-analysis not only sheds light on the stimulatory effects of plant invasion on GHG emissions from wetland and terrestrial ecosystems but also improves our current understanding of the mechanisms underlying the responses of GHG emissions to plant invasion.

Combined biochar and double inhibitor application offsets NH3 and N2O emissions and mitigates N leaching in paddy fields.

The effects of combined biochar and double inhibitor application on gaseous nitrogen (N; nitrous oxide [N2O] and ammonia [NH3]) emissions and N leaching in paddy soils remain unclear. We investigated the effects of biochar application at different rates and double inhibitor application (hydroquinone [HQ] and dicyandiamide [DCD]) on NH3 and N2O emissions, N leaching, as well as rice yield in a paddy field, with eight treatments, including conventional urea N application at 280 kg N ha-1 (CN); reduced N application at 240 kg N ha-1 (RN); RN + 7.5 t ha-1 biochar (RNB1); RN + 15 t ha-1 biochar (RNB2); RN + HQ + DCD (RNI); RNB1 + HQ + DCD (RNIB1); RNB2 + HQ + DCD (RNIB2); and a control without N fertilizer. When compared with N leaching under RN, biochar application reduced total N leaching by 26.9-34.8% but stimulated NH3 emissions by 13.2-27.1%, mainly because of enhanced floodwater and soil NH4+-N concentrations and pH, and increased N2O emission by 7.7-21.2%, potentially due to increased soil NO3--N concentrations. Urease and nitrification inhibitor addition decreased NH3 and N2O emissions, and total N leaching by 20.1%, 21.5%, and 22.1%, respectively. Compared with RN, combined biochar (7.5 t ha-1) and double inhibitor application decreased NH3 and N2O emissions, with reductions of 24.3% and 14.6%, respectively, and reduced total N leaching by up to 45.4%. Biochar application alone or combined with double inhibitors enhanced N use efficiency from 26.2% (RN) to 44.7% (RNIB2). Conversely, double inhibitor application alone or combined with biochar enhanced rice yield and reduced yield-scaled N2O emissions. Our results suggest that double inhibitor application alone or combined with 7.5 t ha-1 biochar is an effective practice to mitigate NH3 and N2O emission and N leaching in paddy fields.

Divergent responses of wetland methane emissions to elevated atmospheric CO2 dependent on water table.

Elevated atmospheric CO2 may have consequences for methane (CH4) emissions from wetlands, yet the magnitude and direction remain unpredictable, because the associated mechanisms have not been fully investigated. Here, we established an in situ macrocosm experiment to compare the effects of elevated CO2 (700 ppm) on the CH4 emissions from two wetlands: an intermittently inundated Calamagrostis angustifolia marsh and a permanently inundated Carex lasiocarpa marsh. The elevated CO2 increased CH4 emissions by 27.6-57.6% in the C. angustifolia marsh, compared to a reduction of 18.7-23.5% in the C. lasiocarpa marsh. The CO2-induced increase in CH4 emissions from the C. angustifolia marsh was paralleled with (1) increased dissolved organic carbon (DOC) released from plant photosynthesis and (2) reduced (rate of) CH4 oxidation due to a putative shift in methanotrophic community composition. In contrast, the CO2-induced decrease in CH4 emissions from the C. lasiocarpa marsh was associated with the increases in soil redox potential and pmoA gene abundance. We synthesized data from worldwide wetland ecosystems, and found that the responses of CH4 emissions to elevated CO2 was determined by the wetland water table levels and associated plant oxygen secretion capacity. In conditions with elevated CO2, plants with a high oxygen secretion capacity suppress CH4 emissions while plants with low oxygen secretion capacity stimulate CH4 emissions; both effects are mediated via a feedback loop involving shifts in activities of methanogens and methanotrophs.

Large variations in indirect N2O emission factors (EF5) from coastal aquaculture systems in China from plot to regional scales.

Aquaculture ponds are important anthropogenic sources of nitrous oxide (N2O). Direct N2O emissions arising from feed application to ponds have been widely investigated, but indirect emissions from N2O production from residual feeds in pond water are much less understood and characterized to refine the IPCC emission factor. In this study, we determined the concentrations and spatiotemporal variations of dissolved N2O and NO3--N in situ in three aquaculture ponds at the Min River Estuary in southeastern China during the culture period over two years, and calculated the indirect N2O emission factor (EF5) for aquaculture ponds using the N2O-N/NO3--N mass ratio methodology. Our results indicated that the EF5 values in the ponds over the culture period ranged between 0.0007 and 0.0543, with a clear seasonal pattern which closely followed that of the DOC:NO3-N ratio. We also observed significant spatial variations in EF5 among the three ponds, which could be attributed to the difference in feed conversion rate. In addition, we assessed the EF5 values from aquaculture ponds in five regions of the Chinese coastline across the latitudinal gradient from the tropical to the temperate zones. The average EF5 value from aquaculture ponds across the five coastal regions was 0.0093±0.0024, which was approximately 3.7 times of the IPCC default value for rivers and estuaries (0.0025). Moreover, the EF5 values demonstrated considerable spatial variations across these coastal regions with a coefficient of variation of 59%, which were largely related to the difference in water salinity. Our findings filled a key knowledge gap about the indirect N2O emission factor from aquaculture ponds, and provided field evidence for the refinement of EF5 value currently adopted by IPCC in the national greenhouse gas inventory.

Corn cobs efficiently reduced ammonia volatilization and improved nutrient value of stored dairy effluents.

Dairy farms produce considerable quantities of nutrient-rich effluent, which is generally stored before use as a soil amendment. Unfortunately, a portion of the dairy effluent N can be lost through volatilization during open pond storage to the atmosphere. Adding of covering materials to effluent during storage could increase contact with NH4+ and modify effluent pH, thereby reducing NH3 volatilization and retaining the effluent N as fertilizer for crop application. Here the mitigation effect of cover materials on ammonia (NH3) volatilization from open stored effluents was measured. A pilot-scale study was conducted using effluent collected at the Youran Dairy Farm Company Limited, Luhe County, Jiangsu, China, from 15 June to 15 August 2019. The study included seven treatments: control without amendment (Control), 30-mm × 25-mm corn cob pieces (CC), light expanded clay aggregate - LECA (CP), lactic acid (LA) and lactic acid plus CC (CCL), CP (CPL) or 20-mm plastic balls (PBL). The NH3 emission from the Control treatment was 120.1 g N m-2, which was increased by 38.1% in the CP treatment, possibly due to increased effluent pH. The application of CC reduced NH3 loss by 69.2%, compared with the Control, possibly due to high physical resistance, adsorption of NH4+ and effluent pH reduction. The lactic acid amendment alone and in combination with other materials also reduced NH3 volatilization by 27.4% and 31.0-46.7%, respectively. After 62 days of storage, effluent N conserved in the CC and CCL treatments were 21.0% and 22.0% higher than that in the Control (P < 0.05). Our results suggest that application of corn cob pieces, alone or in combination with lactic acid, as effluent cover could effectively mitigate NH3 volatilization and retain N, thereby enhancing the fertilizer value of the stored dairy effluent and co-applied as a soil amendment after two months open storage.

Methane and nitrous oxide have separated production zones and distinct emission pathways in freshwater aquaculture ponds.

Aquaculture systems receive intensive carbon (C) and nitrogen (N) loadings, and are therefore recognized as major anthropogenic sources of methane (CH4) and nitrous oxide (N2O) emissions. However, the extensively managed aquaculture ponds were identified as a hotspot of CH4 emission but just a weak N2O source. Here, we investigate annual CH4 and N2O fluxes from three earthen ponds used for crab culture, of different sizes, in southeast China. Our purposes are to identify the spatiotemporal variations of CH4 and N2O emissions and their components among ponds and to evaluate the zone for CH4 and N2O production. Static chamber-measured CH4 flux ranged from 0.03 to 64.7 mg CH4 m‒2 h‒1 (average: 9.02‒14.3 mg CH4 m‒2 h‒1), and temperature, followed by dissolved organic C (DOC) concentration, and redox potential, were the primary drivers of seasonal CH4 flux patterns. Annual mean diffusive CH4 flux was 1.80‒2.34 mg CH4 m‒2 h‒1, and that by ebullition was up to 7.20‒12.0 mg CH4 m‒2 h‒1 (79.1‒83.5% of the total CH4 flux). Annual CH4 emission was positively correlated with sediment DOC concentration but negatively (P < 0.05) correlated with water depth across ponds, with the highest CH4 emission occurred in a pond with low water depth and high DOC concentration. The calculated diffusive N2O flux by the gas transfer velocity was 0.32‒0.60 times greater than the measured N2O emission, suggesting that N2O in water column can not only evade as water-air fluxes but diffuse downwards and to be consumed in anaerobic sediments. This also indicates that N2O was primarily produced in water column. The highly reduced condition and depletion of NO3‒-N in sediments, can limit N2O production from both nitrification and denitrification but favor N2O consumption, leading the ponds to become a weak source of N2O annually and even a sink of N2O in summer. Our results highlight that the current global CH4 budget for inland waters is probably underestimated due to a lack of data and underestimation of the contribution of ebullitive CH4 flux in small lentic waters. The downwards N2O diffusion from the water column into sediment also indicates that the extensively-used model approach based on gas transfer velocity potentially overestimates N2O fluxes, especially in small eutrophic aquatic ecosystems.

Microbial decomposition of soil organic matter determined by edaphic characteristics of mangrove forests in East Asia.

Mangrove forests cover only 0.1% of the world's continental area; however, these are a substantial carbon sink owing to the high primary production and low rate of decomposition of soil organic matter (SOM). The extremely low decomposition rate of SOM in mangrove forests is believed to be caused by low oxygen and nutrient availability as well as recalcitrant biomass from mangrove. However, only a few studies have addressed the microbial mechanism that plays a key role in the decomposition of SOM. In this study, the decomposition of SOM were determined by conducting a field survey and an lab incubation experiment using soil samples from mangrove forests in three regions; Okinawa, Shenzhen, and Hong Kong. In particular, we examined the occurrence of the enzymic latch mechanism, which involves phenolic inhibition of enzymic decomposition, in mangrove forest soils that highlights the importance of phenol oxidase as a key controlling factor. The results clearly showed that enzymic latch involved in the accumulation of SOM in the mangroves of Shenzhen and Hong Kong, whereas the accumulation of SOM in Okinawa was controlled by other mechanisms, such as the iron gate mechanism, which involves stabilization of soil carbon in iron-SOM complexes. The characteristics of mangrove forests, such as iron concentration, were shown as substantial determination factors in the dynamics of SOM. We concluded that the decomposition of SOM were strongly affected by the characteristics of mangrove forests, and the occurrence of enzymic latch in mangrove forests has a potential application in geoengineering technology to enhance the carbon sequestration capacity of mangrove forests.

[Effects of Controlled-Release Urea Application on N2O Emission in Maize-Cultivated Sandy Loam Soil].

A field experiment was conducted in maize-cultivated sandy loam soil in the old flooded area of the Yellow River to evaluate the responses of N2O emissions to application of different type of controlled-release urea. An inorganic N fertilizer was applied at 270 kg·hm-2 during the maize season. Urea was applied alone and in combination with sulfur-coated urea (SCU) or polyurethane-coated urea (PCU) at N ratios of 30%:70%, 50%:50%, and 70%:30%, respectively. Cumulative N2O emission under urea treatment alone (CN) was 1.78 kg·hm-2 with a N2O emission factor of 0.38%. In comparison to CN, 70% urea+30% SCU, 50% urea+50% SCU, and 30% urea+70% SCU treatments reduced N2O emission by 1.12%, 22.5%, and 11.2%, respectively. In contrast, application of urea in combination with PCU (with the proportion varied from 30%-70%) increased N2O emission by 0.02-0.41 kg·hm-2 compared with the CN, while 30% urea+70% PCU treatment showed a 23.0% increase. Regression analysis showed that N2O flux was significantly (P<0.01) correlated with soil temperature at 10 cm depth and concentrations of soil NH4+-N and NO3--N in all the treatments, but not with soil moisture or dissolved organic carbon concentration. Compared with the CN, the 50% urea+50% SCU and 50% urea+50% PCU treatments slightly, but not significantly, increased the maize yield, whereas the 30% urea+70% SCU treatment showed a reduction effect. Overall, the mitigation effect of controlled-release urea on N2O emission may primarily depend on its coating material and application rate.

Combined application of biochar with urease and nitrification inhibitors have synergistic effects on mitigating CH4 emissions in rice field: A three-year study.

Biochar and inhibitors applications have been proposed for mitigating soil greenhouse gas emissions. However, how biochar, inhibitors and the combination of biochar and inhibitors affect CH4 emissions remains unclear in paddy soils. The objective of this study was to explore the effects of biochar application alone, and in combination with urease (hydroquinone) and nitrification inhibitors (dicyandiamide) on CH4 emissions and yield-scaled CH4 emissions during three rice growing seasons in the Taihu Lake region (Suzhou and Jurong), China. In Suzhou, N fertilization rates of 120-280 kg N ha-1 increased CH4 emissions compared to no N fertilization (Control) (P < 0.05), and the highest emission was observed at 240 kg N ha-1, possibly due to the increase in rice-derived organic carbon (C) substrates for methanogens. Biochar amendment combined with N fertilization reduced CH4 emissions by 13.2-27.1% compared with optimal N (ON, Suzhou) and conventional N application (CN-J, Jurong) (P < 0.05). This was related to the reduction in soil dissolved organic C and the increase in soil redox potential. Addition of urease and nitrification inhibitor (ONI) decreased CH4 emissions by 15.7% compared with ON treatment. Combined application of biochar plus urease, nitrification and double inhibitors further decreased CH4 emissions by 22.2-51.0% compared with ON and CN-J treatment. ON resulted in the highest yield-scaled CH4 emissions, while combined application of biochar alone and in combination with the inhibitors decreased yield-scaled CH4 emissions by 12.7-54.9% compared with ON and CN-J treatment (P < 0.05). The lowest yield-scaled CH4 emissions were observed under combined application of 7.5 t ha-1 biochar with both urease and nitrification inhibitors. These findings suggest that combined application of biochar and inhibitors could mitigate total CH4 and yield-scaled CH4 emissions in paddy fields in this region.

Nitrous oxide emissions from China's croplands based on regional and crop-specific emission factors deviate from IPCC 2006 estimates.

Calculated N2O emission factors (EFs) of applied nitrogen (N) fertilizer are currently based upon a single, universal value advocated by the IPCC (Inter-governmental Panel on Climate Change) even though EFs are thought to vary with climate and soil types. Here, we compiled and analyzed 151 N2O EF values from agricultural fields across China. The EF of synthetic N applied to these croplands was 0.60%, on average, but differed significantly among six climatic zones across the country, with the highest EF found in the north subtropical zone for upland fields (0.93%) and the lowest in the middle subtropical zone for paddy fields (0.20%). Precipitation and soil pH, which showed non-linear relationships with EF, are among the factors governing it, explaining 7.0% and 8.0% of the regional variation in EFs, respectively. Annual precipitation was the key factor regulating N2O emissions from synthetic N fertilizers. Among crop types, legume crops had the highest EFs, which were significantly (P < 0.05) higher than those of cereals. Total soil N2O emissions from fertilized croplands with maize, rice, wheat, and vegetables in China, calculated using the climatic zone (regional) EFs, were estimated to be 239 Gg N yr-1 with an uncertainty of 21%. Importantly, this value was substantially (33%) lower than that (357 Gg N yr-1) derived from the IPCC default EF but close to the 253 Gg N yr-1 estimated using crop-specific EFs. N2O emissions from applied synthetic N fertilizer accounted for 66.5% of the total annual N2O emissions from China's maize, rice, wheat and vegetable fields. Taken together, our study's results strongly suggest that regional EFs should be included for accurate N2O inventories from croplands across China.

Effects of application of inhibitors and biochar to fertilizer on gaseous nitrogen emissions from an intensively managed wheat field.

The effects of biochar combined with the urease inhibitor, hydroquinone, and nitrification inhibitor, dicyandiamide, on gaseous nitrogen (N2O, NO and NH3) emissions and wheat yield were examined in a wheat crop cultivated in a rice-wheat rotation system in the Taihu Lake region of China. Eight treatments comprised N fertilizer at a conventional application rate of 150kgNha-1 (CN); N fertilizer at an optimal application rate of 125kgNha-1 (ON); ON+wheat-derived biochar at rates of 7.5 (ONB1) and 15tha-1 (ONB2); ON+nitrification and urease inhibitors (ONI); ONI+wheat-derived biochar at rates of 7.5 (ONIB1) and 15tha-1 (ONIB2); and, a control. The reduced N fertilizer application rate in the ON treatment decreased N2O, NO, and NH3 emissions by 45.7%, 17.1%, and 12.3%, respectively, compared with the CN treatment. Biochar application increased soil organic carbon, total N, and pH, and also increased NH3 and N2O emissions by 32.4-68.2% and 9.4-35.2%, respectively, compared with the ON treatment. In contrast, addition of urease and nitrification inhibitors decreased N2O, NO, and NH3 emissions by 11.3%, 37.9%, and 38.5%, respectively. The combined application of biochar and inhibitors more effectively reduced N2O and NO emissions by 49.1-49.7% and 51.7-55.2%, respectively, compared with ON and decreased NH3 emission by 33.4-35.2% compared with the ONB1 and ONB2 treatments. Compared with the ON treatment, biochar amendment, either alone or in combination with inhibitors, increased wheat yield and N use efficiency (NUE), while addition of inhibitors alone increased NUE but not wheat yield. We suggest that an optimal N fertilizer rate and combined application of inhibitors+biochar at a low application rate, instead of biochar application alone, could increase soil fertility and wheat yields, and mitigate gaseous N emissions.

Methanogenic Community Was Stable in Two Contrasting Freshwater Marshes Exposed to Elevated Atmospheric CO2.

The effects of elevated atmospheric CO2 concentration on soil microbial communities have been previously recorded. However, limited information is available regarding the response of methanogenic communities to elevated CO2 in freshwater marshes. Using high-throughput sequencing and real-time quantitative PCR, we compared the abundance and community structure of methanogens in different compartments (bulk soil, rhizosphere soil, and roots) of Calamagrostis angustifolia and Carex lasiocarpa growing marshes under ambient (380 ppm) and elevated CO2 (700 ppm) atmospheres. C. lasiocarpa rhizosphere was a hotspot for potential methane production, based on the 10-fold higher abundance of the mcrA genes per dry weight. The two marshes and their compartments were occupied by different methanogenic communities. In the C. lasiocarpa marsh, archaeal family Methanobacteriaceae, Rice Cluster II, and Methanosaetaceae co-dominated in the bulk soil, while Methanobacteriaceae was the exclusively dominant methanogen in the rhizosphere soil and roots. Families Methanosarcinaceae and Methanocellaceae dominated in the bulk soil of C. angustifolia marsh. Conversely, Methanosarcinaceae and Methanocellaceae together with Methanobacteriaceae dominated in the rhizosphere soil and roots, respectively, in the C. angustifolia marsh. Elevated atmospheric CO2 increased plant photosynthesis and belowground biomass of C. lasiocarpa and C. angustifolia marshes. However, it did not significantly change the abundance (based on mcrA qPCR), diversity, or community structure (based on high-throughput sequencing) of methanogens in any of the compartments, irrespective of plant type. Our findings suggest that the population and species of the dominant methanogens had weak responses to elevated atmospheric CO2. However, minor changes in specific methanogenic taxa occurred under elevated atmospheric CO2. Despite minor changes, methanogenic communities in different compartments of two contrasting freshwater marshes were rather stable under elevated atmospheric CO2.

Shifts in methanogen community structure and function across a coastal marsh transect: effects of exotic Spartina alterniflora invasion.

Invasion of Spartina alterniflora in coastal areas of China increased methane (CH4) emissions. To elucidate the underlying mechanisms, we measured CH4 production potential, methanogen community structure and biogeochemical factors along a coastal wetland transect comprised of five habitat regions: open water, bare tidal flat, invasive S. alterniflora marsh and native Suaeda salsa and Phragmites australis marshes. CH4 production potential in S. alterniflora marsh was 10 times higher than that in other regions, and it was significantly correlated with soil organic carbon, dissolved organic carbon and trimethylamine concentrations, but was not correlated with acetate or formate concentrations. Although the diversity of methanogens was lowest in S. alterniflora marsh, invasion increased methanogen abundance by 3.48-fold, compared with native S. salsa and P. australis marshes due to increase of facultative Methanosarcinaceae rather than acetotrophic and hydrogenotrophic methanogens. Ordination analyses suggested that trimethylamine was the primary factor regulating shift in methanogen community structure. Addition of trimethylamine increased CH4 production rates by 1255-fold but only by 5.61- and 11.4-fold for acetate and H2/CO2, respectively. S. alterniflora invasion elevated concentration of non-competitive trimethylamine, and shifted methanogen community from acetotrophic to facultative methanogens, which together facilitated increased CH4 production potential.

Substrate sources regulate spatial variation of metabolically active methanogens from two contrasting freshwater wetlands.

There is ample evidence that methane (CH4) emissions from natural wetlands exhibit large spatial variations at a field scale. However, little is known about the metabolically active methanogens mediating these differences. We explored the spatial patterns in active methanogens of summer inundated Calamagrostis angustifolia marsh with low CH4 emissions and permanently inundated Carex lasiocarpa marsh with high CH4 emissions in Sanjiang Plain, China. In C. angustifolia marsh, the addition of (13)C-acetate significantly increased the CH4 production rate, and Methanosarcinaceae methanogens were found to participate in the consumption of acetate. In C. lasiocarpa marsh, there was no apparent increase in the CH4 production rate and no methanogen species were labeled with (13)C. When (13)CO2-H2 was added, however, CH4 production was found to be due to Fen Cluster (Methanomicrobiales) in C. angustifolia marsh and Methanobacterium Cluster B (Methanobacteriaceae) together with Fen Cluster in C. lasiocarpa marsh. These results suggested that CH4 was produced primarily by hydrogenotrophic methanogens using substrates mainly derived from plant litter in C. lasiocarpa marsh and by both hydrogenotrophic and acetoclastic methanogens using substrates mainly derived from root exudate in C. angustifolia marsh. The significantly lower CH4 emissions measured in situ in C. angustifolia marsh was primarily due to a deficiency of substrates compared to C. lasiocarpa marsh. Therefore, we speculate that the substrate source regulates both the type of active methanogens and the CH4 production pathway and consequently contributes to the spatial variations in CH4 productions observed in these freshwater marshes.

Exotic Spartina alterniflora invasion alters ecosystem-atmosphere exchange of CH4 and N2O and carbon sequestration in a coastal salt marsh in China.

Coastal salt marshes are sensitive to global climate change and may play an important role in mitigating global warming. To evaluate the impacts of Spartina alterniflora invasion on global warming potential (GWP) in Chinese coastal areas, we measured CH4 and N2O fluxes and soil organic carbon sequestration rates along a transect of coastal wetlands in Jiangsu province, China, including open water; bare tidal flat; and invasive S. alterniflora, native Suaeda salsa, and Phragmites australis marshes. Annual CH4 emissions were estimated as 2.81, 4.16, 4.88, 10.79, and 16.98 kg CH4 ha(-1) for open water, bare tidal flat, and P. australis, S. salsa, and S. alterniflora marshes, respectively, indicating that S. alterniflora invasion increased CH4 emissions by 57-505%. In contrast, negative N2O fluxes were found to be significantly and negatively correlated (P < 0.001) with net ecosystem CO2 exchange during the growing season in S. alterniflora and P. australis marshes. Annual N2O emissions were 0.24, 0.38, and 0.56 kg N2O ha(-1) in open water, bare tidal flat and S. salsa marsh, respectively, compared with -0.51 kg N2O ha(-1) for S. alterniflora marsh and -0.25 kg N2O ha(-1) for P. australis marsh. The carbon sequestration rate of S. alterniflora marsh amounted to 3.16 Mg C ha(-1) yr(-1) in the top 100 cm soil profile, a value that was 2.63- to 8.78-fold higher than in native plant marshes. The estimated GWP was 1.78, -0.60, -4.09, and -1.14 Mg CO2 eq ha(-1) yr(-1) in open water, bare tidal flat, P. australis marsh and S. salsa marsh, respectively, but dropped to -11.30 Mg CO2 eq ha(-1) yr(-1) in S. alterniflora marsh. Our results indicate that although S. alterniflora invasion stimulates CH4 emissions, it can efficiently mitigate increases in atmospheric CO2 and N2O along the coast of China.

Substrate and/or substrate-driven changes in the abundance of methanogenic archaea cause seasonal variation of methane production potential in species-specific freshwater wetlands.

There are large temporal and spatial variations of methane (CH4) emissions from natural wetlands. To understand temporal changes of CH4 production potential (MPP), soil samples were collected from a permanently inundated Carex lasiocarpa marsh and a summer inundated Calamagrostis angustifolia marsh over the period from June to October of 2011. MPP, dissolved organic carbon (DOC) concentration, abundance and community structure of methanogenic archaea were assessed. In the C. lasiocarpa marsh, DOC concentration, MPP and the methanogen population showed similar seasonal variations and maximal values in September. MPP and DOC in the C. angustifolia marsh exhibited seasonal variations and values peaked during August, while the methanogen population decreased with plant growth. Methanogen abundance correlated significantly (P = 0.02) with DOC only for the C. lasiocarpa marsh. During the sampling period, the dominant methanogens were the Methanosaetaceae and Zoige cluster I (ZC-Ι) in the C. angustifolia marsh, and Methanomicrobiales and ZC-Ι in the C. lasiocarpa marsh. MPP correlated significantly (P = 0.04) with DOC and methanogen population in the C. lasiocarpa marsh but only with DOC in the C. angustifolia marsh. Addition of C. lasiocarpa litter enhanced MPP more effectively than addition of C. angustifolia litter, indicating that temporal variation of substrates is controlled by litter deposition in the C. lasiocarpa marsh while living plant matter is more important in the C. angustifolia marsh. This study indicated that there was no apparent shift in the dominant types of methanogen during the growth season in the species-specific freshwater wetlands. Temporal variation of MPP is controlled by substrates and substrate-driven changes in the abundance of methanogenic archaea in the C. lasiocarpa marsh, while MPP depends only on substrate availability derived from root exudates or soil organic matter in the C. angustifolia marsh.

Methane production potential and methanogenic archaea community dynamics along the Spartina alterniflora invasion chronosequence in a coastal salt marsh.

Invasion by the exotic species Spartina alterniflora, which has high net primary productivity and superior reproductive capacity compared with native plants, has led to rapid organic carbon accumulation and increased methane (CH4) emission in the coastal salt marsh of China. To elucidate the mechanisms underlying this effect, the methanogen community structure and CH4 production potential as well as soil organic carbon (SOC), dissolved organic carbon, dissolved organic acids, methylated amines, aboveground biomass, and litter mass were measured during the invasion chronosequence (0-16 years). The CH4 production potential in the S. alterniflora marsh (range, 2.94-3.95 µg kg(-1) day(-1)) was significantly higher than that in the bare tidal mudflat. CH4 production potential correlated significantly with SOC, acetate, and trimethylamine concentrations in the 0-20 cm soil layer. The abundance of methanogenic archaea also correlated significantly with SOC, and the dominant species clearly varied with S. alterniflora-driven SOC accumulation. The acetotrophic Methanosaetaceae family members comprised a substantial proportion of the methanogenic archaea in the bare tidal mudflat while Methanosarcinaceae family members utilized methylated amines as substrates in the S. alterniflora marsh. Ordination analysis indicated that trimethylamine concentration was the primary factor inducing the shift in the methanogenic archaea composition, and regressive analysis indicated that the facultative family Methanosarcinaceae increased linearly with trimethylamine concentration in the increasingly sulfate-rich salt marsh. Our results indicate that increased CH4 production during the S. alterniflora invasion chronosequence was due to increased levels of the non-competitive substrate trimethylamine and a shift in the methanogenic archaea community.