Phylogenomics of darkling beetles (Coleoptera: Tenebrionidae) from the Atacama Desert.

Background: Tenebrionidae (Insecta: Coleoptera) are a conspicuous component of desert fauna worldwide. In these ecosystems, they are significantly responsible for nutrient cycling and show remarkable morphological and physiological adaptations. Nevertheless, Tenebrionidae colonizing individual deserts have repeatedly emerged from different lineages. The goal of our study was to gain insights into the phylogenetic relationships of the tenebrionid genera from the Atacama Desert and how these taxa are related to the globally distributed Tenebrionidae. Methods: We used newly generated transcriptome data (47 tribes, 7 of 11 subfamilies) that allowed for a comprehensive phylogenomic analysis of the tenebrionid fauna of this hyperarid desert and fills a gap in our knowledge of the highly diversified Tenebrionidae. We examined two independent data sets known to be suitable for phylogenomic reconstructions. One is based on 35 neuropeptide precursors, the other on 1,742 orthologous genes shared among Coleoptera. Results: The majority of Atacama genera are placed into three groups, two of which belong to typical South American lineages within the Pimeliinae. While the data support the monophyly of the Physogasterini, Nycteliini and Scotobiini, this does not hold for the Atacama genera of Edrotini, Epitragini, Evaniosomini, Praociini, Stenosini, Thinobatini, and Trilobocarini. A suggested very close relationship of Psammetichus with the Mediterranean Leptoderis also could not be confirmed. We also provide hints regarding the phylogenetic relationships of the Caenocrypticini, which occur both in South America and southern Africa. Apart from the focus on the Tenebrionidae from the Atacama Desert, we found a striking synapomorphy grouping Alleculinae, Blaptinae, Diaperinae, Stenochinae, and several taxa of Tenebrioninae, but not Tenebrio and Tribolium. This character, an insertion in the myosuppressin gene, defines a higher-level monophyletic group within the Tenebrionidae. Conclusion: Transcriptome data allow a comprehensive phylogenomic analysis of the tenebrionid fauna of the Atacama Desert, which represents one of the seven major endemic tribal areas in the world for Tenebrionidae. Most Atacama genera could be placed in three lineages typical of South America; monophyly is not supported for several tribes based on molecular data, suggesting that a detailed systematic revision of several groups is necessary.

Phylogeny of Telmatobius marmoratus complex (Anura, Telmatobiidae) reveals high cryptic diversity in the Andean Altiplano.

Telmatobius is the most diverse group of anurans in the Andean Altiplano (highlands) Morphologically, these amphibians have a generally conserved morphology but in turn present large intraspecific variation, which has led to a complex taxonomy and systematics. T. marmoratus has the widest distribution of the genus and forms a complex composed of at least two Telmatobius species. Partial systematic studies based on molecular evidence reveal the existence of three lineages with a complex spatial distribution. However, these studies did not include the entire distribution of T. marmoratus. Our study aims to reassess the current systematic scenario including the complete distribution of the complex. For this, we used a multilocus approach based on mitochondrial (16S, Cytb) and nuclear (RAG1-1, BFIB) DNA sequences to build a phylogenetic hypothesis based on Bayesian inference, maximum likelihood and maximum parsimony. Subsequently, we performed single-locus (ABGD and PTP) and multilocus (STACEY) species delimitation analyses to verify the diversity of nominal species within the complex. The analyses suggest seven non-sibling lineages and 6-10 candidate species within the marmoratus complex. Only one of the two lineages restricted to the central northern plateau correspond to T. marmoratus sensu stricto. South-central marbled water frogs belong to completely new lineages closer to T. gigas and T. culeus, evidencing the polyphyletic condition of the marmoratus complex. The findings of several sympatric lineages in some localities reveal a complex history of ancient water connections in south-central Altiplano.

Testing Phylogeographic Hypotheses in Mepraia (Hemiptera: Reduviidae) Suggests a Complex Spatio-Temporal Colonization in the Coastal Atacama Desert.

Mepraia is a genus (Triatominae) endemic to Chile and a vector of Trypanosoma cruzi. Alternative phylogeographic hypotheses have been suggested for Mepraia. We tested different colonization routes hypothesized using mitochondrial sequences and phylogeographic approaches to select the best-supported hypothesis. Our results suggest that, after the split from the sister genus Triatoma at ~4.3 Mya, Mepraia formed two main clades at ~2.1 Mya. The northern clade diverged from Mepraia sp. ~1.7 Mya, giving rise to M. parapatrica and M. gajardoi about ~1.4 Mya. The southern clade originated M. spinolai ~1.68 Mya. We suggest that Mepraia had an origin in the north-central Andes along with orogenic processes, reinforced by hyperaridity during the Pliocene. The hyperarid cycle would have separated the southern and northern clades. Then, in the northern clade, dispersal occurred north and south from the centre through corridors during the Pleistocene Climatic Oscillations. Climate changes may have induced a major speciation process in the Atacama Desert, while the more homogeneous habitat colonized by the southern clade led to only one, but structured, species.

A new species of Psectrascelis (Coleoptera: Tenebrionidae: Pimeliinae) from the coastal dunes of the Atacama Desert, Chile.

Psectrascelis is one of the most specious genus of darkling beetles of South America, comprising 82 species that inhabit arid and semiarid environments. The species are distributed mainly in Argentina and Chile. In general, the taxonomy of several species in this group has been difficult to approach. An example is Psectrascelis pilosa Solier and Psectrascelis conjugens Fairmaire, species morphologically similar which presents a rather poor original description and mislabelled. These species are distributed sympatrically in coastal terraces at the northern side of Huasco river, northern Chile. We collected several specimens of Psectrascelis on the southern side of Huasco river which are morphologically similar to P. pilosa. Morphological and genetic analysis support the description of the species Psectrascelis ammophila sp. nov., which is more closely related to Psectrascelis elongata and Psectrascelis pilipes specularis than other morphologically similar species (Psectrascelis pilosa and Psectrascelis conjugens). The importance of the Huasco river as barrier and the evolutionary convergence is discussed to explain the crypsis and the phylogenetic pattern found.

Taxonomic and systematic implications of the revision of the phylogenetic relations in the genus Ectinogonia Spinola 1837 (Coleoptera: Buprestidae) of Central Chile.

Ectinogonia Spinola 1837 is composed of 22 species to date, but its taxonomic history has been complex and is still unresolved. The species of the Santiagan Province of Central Chile are particularly complex because they show important morphological variability and overlapping traits, making species identification and delimitation difficult. The main goal of the present study is to show the phylogenetic relationships among species of Ectinogonia of the Santiagan province and discuss the taxonomic and systematic implications of our findings. Phylogeny reconstructions as well as a haplotype network disclosed four groups, partially inconsistent with the traditional taxonomy. Actually, the two Ectinogonia speciosa subspecies (E. speciosa speciosa (Germain 1856) and E. speciosa oscuripennis Cobos 1954) belong to two distinct clades, which are not reciprocally monophyletic, meaning that Ectinogonia speciosa is polyphyletic. On the other hand, the two other clades each contain, two nominal species (E. buquetii (Spinola 1837) and E. vidali Moore Guerrero 2017, and E. isamarae Moore 1994 and E. speciosa oscuripennis Cobos 1954) without reciprocal haplotype sorting. These results suggest that: (1) E. speciosa oscuripennis should be raised to species level and (2) the following new synonymies are proposed: E. isamarae Moore 1994 is synonymised with E. oscuripennis Cobos 1954 and E. vidali Moore Guerrero 2017 is synonymised with E. buquetii (Spinola 1837).

No more machismo in Callyntra (Coleoptera: Tenebrionidae): Callyntra femina, a new species discovered based on female genitalia and genetic evidence.

Callyntra is a genus of tenebrionid beetles endemic to the Southern Cone region of South America, with 23 species occurring in Chile and one shared with Argentina. The recent descriptions of new species were commonly based on the male genitalia structure, underestimating the utility of the female genitalia for this purpose. Analysis of the ovipositor structure of a series of females assigned to Callyntra carbonaria from the Bío-Bío and Araucanía in Southern Chile, have resulted in the discovery of a new species, Callyntra femina sp. nov., which was corroborated through molecular analysis using COI and 16S gene fragments. The phylogenetic analysis recovered C. femina as sister to a clade composed of C. rossi, C. carbonaria and C. riverai, being genetically more similar to C. rossi.

Hidden and cryptic species reflect parallel and correlated evolution in the phylogeny of the genus Callyntra (Coleoptera: Tenebrionidae) of Central Chile.

The origin of cryptic species has traditionally been associated with events of recent speciation, genetic constraints, selection of an adaptive character, sexual selection and/or convergent evolution. Species of the genus Callyntra inhabit coastal terraces, mountain slopes, and peaks; their elytral designs are associated with each of these habitats. However, cryptic species have been described within each of these habitats; the taxonomy of this group has been problematic, thus establishing the phylogenetic relationships in this group is fundamental to clarify the systematics and evolutionary patterns of Callyntra. We reconstructed the phylogeny of this group using two mitochondrial genes (COI, 16S) and one nuclear gene (Mp20). We also performed species delimitation using PTP based methods (PTP, mlPTP, bPTP) and GMYC, and evaluated the evolution of the elytral design related to habitat preference. The results showed a tree with five clades, that together with the different methods of species delimitation recovered the described species and suggested at least five new species. The elytral design and habitat preference showed phylogenetic signals. We propose a new classification based on monophyletic groups recovered by phylogenetic analyses. We also suggest that parallel evolution in different habitats and later stasis in the elytral design would be the cause of the origin of cryptic species in this group from central Chile.

A new species of Austrocodrus Ogloblin (Hymenoptera, Proctotrupidae, Austroserphinae), a Gondwanic relict from southernmost South America.

Austrocodrusgladiogeminus sp. n. is described from southernmost South America. It is a member of the primitive subfamily Austroserphinae (Hymenoptera, Proctotrupidae), which is distributed in Oceania and South America, and is characterized from other Austrocodrus species by its relatively larger body size, the presence of long and sword-shaped ovipositor sheaths, M arising very close and distal to 1cu-a, and Cu and m-cu joining at a distance equivalent to the length of 2cu-a. We consider this species to be a Gondwanan relict. It has southernmost distribution of any proctotrupid.

Species delimitation in frogs from South American temperate forests: The case of Eupsophus, a taxonomically complex genus with high phenotypic variation.

One of the most characteristic and abundant amphibian taxa of South American temperate forests is Eupsophus. The ten currently recognized species of the genus have been divided in two species groups, roseus and vertebralis, but most of them, eight, belong to the roseus group. Recent phylogeographic and phylogenetic studies have suggested that species diversity of the roseus group could be underestimated. An examination of the literature shows that species of the roseus group exhibit high levels of variation in their external characteristics, particularly those used as diagnostic characters, which compromises their taxonomy and hinders their field recognition. High levels of variation were also observed in several new populations of the roseus group discovered in southern Chile (36°-40°S), which could not be identified to the species level by their external characteristics. On the other hand, the literature reveals a scarse karyotype differentiation and a high bioacoustic uniformity among the species of the roseus group. We performed a Bayesian phylogenetic analysis using mitochondrial and nuclear genes to reevaluate the species diversity of the roseus group, including all the nominal species of Eupsophus and new populations. This analysis was complemented with three species delimitation approaches, General Mixed Yule Coalescent, multi-rate Poisson Tree Process and Automatic Barcode Gap Discovery. We favored a conservative delimitation of only four species for the roseus group, a result more consistent with the distribution of pairwise genetic distances, and the available chromosome and bioacoustic evidence. The four recognized lineages, which have nearly completely allopatric distributions, are named after the earliest nominal species that they include, but because high levels of phenotypic variation, they are not diagnosable by consistent differences in external morphology. We discuss the implications of this new proposal for the taxonomy and conservation of the genus, and the possible causes of the difficulty to estimate its species diversity.

Phylogenetic evaluation of taxonomic definition of didelphid mouse opossum of the genus Thylamys from valleys of Coquimbo region, Chile.

Only two species of Didelphidae are currently recognized in Chile, the sister species Thylamys elegans, endemic of Mediterranean ecorregion and Thylamys pallidior, the inhabitant of the Puna and desert canyons. Three subspecies have been described for T. elegans: T. e. elegans, T. e. coquimbensis and T. e. soricinus. However, a recent study based on morphological analyses, synonymized T. elegans coquimbensis from the Coquimbo valleys (30-31° S) with T. pallidior and proposed that T. elegans and T. pallidior could be in sympatry at Coquimbo valleys between Fray Jorge (30°40'S) and Paiguano (30°02' S). We assess the current definition of T. e. coquimbensis and T. e. elegans, as well as this taxonomical conflict among the mouse opossums from the Coquimbo valleys through phylogenetic analyses of cytochrome b mitochondrial gene sequences. In this study, for the first time, we used specimens from the type localities of T. e. coquimbensis and T. e. elegans. In addition, we analyzed diagnostic cranial structures for this taxonomic revision. The results supported two allopatric clades, allowing us to keep the taxonomic definition of T. e. elegans and T. e. coquimbensis as phylogenetic reciprocal monophyletic clades and polyphyletic with T. pallidior. This result corroborates previous morphological analyses, which support that mouse opossums from the Coquimbo valleys are T. e. coquimbensis, thus extending its geographic distribution to the coast of Coquimbo and Atacama regions. We don´t have evidence for sympatric distribution between T. elegans and T. pallidior in the Coquimbo region.

A new species of Callyntra (Coleoptera: Tenebrionidae) from central Chile.

Callyntra Solier, 1836 is a genus mainly from Chile, with one species occurring in Argentina, which currently contains 20 described species. Recent explorations in the Andes Mountain Range in Chile, have resulted in the collection of specimens morphologically different from all previously described species. The aim of this paper is to describe a new species of Callyntra, discuss its relationship with other species in the genus, and highlight sexual dimorphism and potential conservation status.