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1.
Eur Respir J ; 37(3): 617-23, 2011 Mar.
Article in English | MEDLINE | ID: mdl-20595154

ABSTRACT

The identification of tumour biomarkers that detect the presence of disease using noninvasive diagnostic procedures is a key part of cancer research. We determined in plasma the vesicle-related microRNA (miRNA) expression profile of nonsmall cell lung cancer (NSCLC) and evaluate whether plasma miRNAs can be both discriminating (between patients and healthy controls) and prognostic markers. 365 human miRNAs were analysed by Taqman® low-density arrays (Applied Biosystems, Foster City, CA, USA) in the plasma from 28 NSCLC patients and 20 controls. Five selected miRNAs (let-7f, miR-20b, miR-30e-3p, miR-223 and miR-301) were validated independently by real-time PCR in plasma from 78 NSCLC and 48 controls and correlated with pathologic parameters and survival. Levels of let-7f, miR-20b and miR-30e-3p were decreased in plasma vesicles of NSCLC patients. Moreover, levels of let-7f and miR-30e-3p distinguished between two groups of patients for stage of disease and therefore possibility of surgery. Plasma levels of miR-30e-3p and let-7f were associated with short disease-free survival and overall survival, respectively. NSCLC patients and healthy controls differ in vesicle-related miRNAs in plasma. Levels of let-7f and miR-30e-3p in NSCLC patients are associated with poor outcome. Thus, plasma vesicle-related miRNAs obtained by noninvasive methods could serve as circulating tumour biomarkers of discriminating and prognostic value.


Subject(s)
Carcinoma, Non-Small-Cell Lung/metabolism , Lung Neoplasms/metabolism , MicroRNAs/metabolism , Biomarkers, Tumor , Carcinoma, Non-Small-Cell Lung/mortality , Case-Control Studies , Disease-Free Survival , False Positive Reactions , Female , Gene Expression Profiling/methods , Gene Expression Regulation, Neoplastic , Genetic Markers , Humans , Lung Neoplasms/mortality , Male , Prognosis
2.
Nanotechnology ; 19(3): 035503, 2008 Jan 23.
Article in English | MEDLINE | ID: mdl-21817571

ABSTRACT

We have measured the effect of bacteria adsorption on the resonant frequency of microcantilevers as a function of the adsorption position and vibration mode. The resonant frequencies were measured from the Brownian fluctuations of the cantilever tip. We found that the sign and amount of the resonant frequency change is determined by the position and extent of the adsorption on the cantilever with regard to the shape of the vibration mode. To explain these results, a theoretical one-dimensional model is proposed. We obtain analytical expressions for the resonant frequency that accurately fit the data obtained by the finite element method. More importantly, the theory data shows a good agreement with the experiments. Our results indicate that there exist two opposite mechanisms that can produce a significant resonant frequency shift: the stiffness and the mass of the bacterial cells. Based on the thermomechanical noise, we analyse the regions of the cantilever of lowest and highest sensitivity to the attachment of bacteria. The combination of high vibration modes and the confinement of the adsorption to defined regions of the cantilever allows the detection of single bacterial cells by only measuring the Brownian fluctuations. This study can be extended to smaller cantilevers and other biological systems such as proteins and nucleic acids.

3.
Neuropathol Appl Neurobiol ; 33(4): 420-30, 2007 Aug.
Article in English | MEDLINE | ID: mdl-17442060

ABSTRACT

Ciliary neurotrophic factor (CNTF) may be implicated in the pathogenetic mechanisms of hepatic encephalopathy. We tested this hypothesis by treating confluent primary cultures of rat astroglial cells with ammonium chloride for various periods and analysing the effect of ammonia on the signalling pathway that regulates CNTF mRNA and protein expression. Ammonia treatment induced a dose- and time-dependent reduction in CNTF mRNA and protein expression. Surface-enhanced laser desorption/ionization-time-of-flight mass spectrometry analysis of CNTF in the culture medium demonstrated that ammonia also induced a significant decrease in CNTF release. In addition, ammonia affected Sp1 and c-fos, transcription factors that regulate CNTF mRNA and protein expression, which showed partial dephosphorylation and significantly lower mRNA and protein levels. Total content of p38MAPK (for which Sp1 and c-fos are substrates) was unaffected by ammonia, although the diphosphorylated (active) form was significantly reduced after ammonia exposure.


Subject(s)
Ammonia/pharmacology , Astrocytes/metabolism , Ciliary Neurotrophic Factor/biosynthesis , Genes, fos/drug effects , RNA, Messenger/biosynthesis , Signal Transduction/drug effects , Sp1 Transcription Factor/biosynthesis , p38 Mitogen-Activated Protein Kinases/biosynthesis , Animals , Astrocytes/drug effects , Blotting, Western , Cells, Cultured , Electrophoresis, Gel, Two-Dimensional , Phosphorylation , Rats , Rats, Wistar , Reverse Transcriptase Polymerase Chain Reaction , Sp1 Transcription Factor/drug effects , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , p38 Mitogen-Activated Protein Kinases/drug effects
4.
Int J Parasitol ; 37(8-9): 887-96, 2007 Jul.
Article in English | MEDLINE | ID: mdl-17376452

ABSTRACT

Here we present the identification and cloning of the NcBSR4 gene, the putative Neospora caninum orthologue to the Toxoplasma gondii TgBSR4 gene. To isolate NcBSR4, genome walking PCR was performed on N. caninum genomic DNA using the expressed sequence tag NcEST3c28h02.y1 sequence, which shares a 44% identity with the TgBSR4 gene, as a framework. Nucleotide sequencing of amplified DNA fragments revealed a single uninterrupted 1227 bp open reading frame that encodes a protein of 408 amino acids with 66% similarity to the TgBSR4 antigen. A putative 39-residue signal peptide was found at the NH2-terminus, followed by a hydrophilic region. At the COOH-terminus, a potential site for a glycosylphosphatidylinositol anchor was identified at amino acid 379. A polyclonal serum against recombinant NcBSR4 protein was raised in rabbits, and immunolabelling demonstrated stage-specific expression of the NcBSR4 antigen in N. caninum bradyzoites produced in vitro and in vivo. Furthermore, RT-PCR analysis showed a slight increase of NcBSR4 transcripts in bradyzoites generated during in vitro tachyzoite-to-bradyzoite stage-conversion, suggesting that this gene is specifically expressed at the bradyzoite stage and that its transcription relies on the switch to this stage.


Subject(s)
Neospora/genetics , Protozoan Proteins/genetics , Amino Acid Sequence , Animals , Cell Differentiation , Cloning, Molecular , Gene Expression Regulation , Genes, Protozoan , Molecular Sequence Data , Neospora/cytology , Protozoan Proteins/chemistry , Protozoan Proteins/metabolism , Recombinant Proteins
5.
Parasitology ; 134(Pt 1): 41-50, 2007 Jan.
Article in English | MEDLINE | ID: mdl-17032479

ABSTRACT

A Neospora caninum 17-19 kDa antigenic protein fraction (p17) in one-dimensional polyacrylamide gel electrophoresis (SDS-PAGE) is the immunodominant antigen recognized by sera from bovines naturally infected by N. caninum. To identify the proteins making up the p17 fraction, we screened a new N. caninum tachyzoite cDNA library with an affinity-purified antibody against p17 (APA17). We isolated several cDNA clones with 100% sequence identity to the NcGRA7 gene. This previously described gene encodes a dense granule protein with an apparent molecular mass of 33 kDa. A second line of evidence emerged through a combined proteomic approach associating two-dimensional PAGE (2D-PAGE) to Western blotting and to mass spectrometry to characterize the p17 fraction. Two acidic immunodominant but minority protein spots were recognized by APA17 and by bovine sera. These antigens of 17 and 33 kDa are respectively composed of 4 and 2 isoforms. Furthermore, p17 isolation by 2D-PAGE and peptide sequencing by tandem mass spectrometry yielded a partial sequence of 17 amino acids, which allowed the putative amino terminal region of the NcGRA7 protein to be identified unambiguously. The NcGRA7 protein, without the putative signal peptide at the NH2-terminus, was cloned and expressed in Escherichia coli and when the purified recombinant protein (rNcGRA7) was analysed by SDS-PAGE and mass spectrometry, 2 bands of 24 and 33 kDa were resolved and identified as NcGRA7. These results demonstrate that the immunodominant 17 kDa antigen of N. caninum is encoded by the NcGRA7 gene.


Subject(s)
Antigens, Protozoan/immunology , Coccidiosis/immunology , Neospora/genetics , Neospora/immunology , Protozoan Proteins/immunology , Amino Acid Sequence , Animals , Antigens, Protozoan/chemistry , Antigens, Protozoan/genetics , Base Sequence , Blotting, Western , Chlorocebus aethiops , Coccidiosis/diagnosis , DNA, Complementary , Databases, Nucleic Acid , Electrophoresis, Gel, Two-Dimensional , Expressed Sequence Tags , Genes, Protozoan , Molecular Sequence Data , Neospora/chemistry , Protozoan Proteins/chemistry , Protozoan Proteins/genetics , Recombinant Proteins/chemistry , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Tandem Mass Spectrometry , Vero Cells
6.
Sensors (Basel) ; 7(9): 1834-1845, 2007 Sep 07.
Article in English | MEDLINE | ID: mdl-28903200

ABSTRACT

When microcantilevers are used in the dynamic mode, the resonance shift uponmaterial adsorption depends on the position of the adsorbate along the microcantilever. Wehave previously described that the adsorbate stiffness needs to be considered in addition toits mass in order to correctly interpret the resonance shift. Here we describe a method thatallows obtaining the Young's modulus of the adsorbed bacteria derived from themeasurement of the frequency shift when adsorbates are placed close to the clampingregion. As a model system we have used E. Coli bacteria deposited on the cantileversurface by the ink-jet technique. We demonstrate that the correct information aboutadsorbed mass can be extracted by recording the cantilever profile and its resonanceresponse. Also, the position and extent of adsorbates is determined by recording themicrocantilever profile. We use a theoretical model based on the Euler - Bernouilliequation for a beam with both mass and flexural rigidity local increase due to the depositedmaterial.

7.
Mol Biochem Parasitol ; 146(1): 89-97, 2006 Mar.
Article in English | MEDLINE | ID: mdl-16303187

ABSTRACT

Here, we identify and clone the NcSAG4 gene, orthologue to the Toxoplasma gondii TgSAG4 gene, and the first reported gene to be expressed specifically during the Neospora caninum bradyzoite stage. To isolate NcSAG4, we designed degenerate oligonucleotides based on the TgSAG4 protein amino acid sequence. A 312-bp DNA fragment was amplified by PCR from N. caninum genomic DNA, whose sequence showed 65% identity to TgSAG4 gene over 257 bp. NcSAG4 gene sequence was obtained by PCR genome walking. Nucleotide sequencing of amplified DNA fragments showed a single uninterrupted 522-bp ORF that encoded a 173-amino-acid protein with a predicted molecular mass of 18,394 Da, with 69% similarity to the TgSAG4 antigen. A 28-residue putative signal peptide was found at the NH2-terminus, followed by a strongly hydrophilic region. An amino acid motif for a phosphatidylinositol glycan anchor was identified at the COOH-terminus. The NcSAG4 protein lacking the putative signal peptide at the NH2-terminus was expressed in Escherichia coli and was recognized in western blot by sera from congenitally infected cattle. A mouse polyclonal anti-rNcSAG4 serum was produced for immunofluorescence studies, and revealed stage-specific NcSAG4 antigen expression in in vitro-cultured bradyzoites. Real-time reverse transcription-PCR analysis with samples from in vitro stage-conversion assay showed increasing levels of NcSAG4 transcript over time, suggesting a developmental upregulation of this gene.


Subject(s)
Life Cycle Stages/physiology , Membrane Glycoproteins/genetics , Neospora/genetics , Protozoan Proteins/genetics , Amino Acid Sequence/genetics , Animals , Blotting, Western/methods , Cattle , Cloning, Molecular/methods , Consensus Sequence , DNA, Protozoan/chemistry , Electrophoresis, Polyacrylamide Gel/methods , Fluorescent Antibody Technique, Indirect/methods , Gene Expression , Membrane Glycoproteins/chemistry , Microscopy, Phase-Contrast/methods , Molecular Sequence Data , Neospora/cytology , Polymerase Chain Reaction , Protozoan Proteins/chemistry , Recombinant Proteins/biosynthesis , Recombinant Proteins/immunology , Reverse Transcriptase Polymerase Chain Reaction
8.
Langmuir ; 20(22): 9663-8, 2004 Oct 26.
Article in English | MEDLINE | ID: mdl-15491200

ABSTRACT

Biomolecular interactions over the surface of a microcantilever can produce its bending motion via changes of the surface stress, which is referred to nanomechanical response. Here, we have studied the interaction forces responsible for the bending motion during the formation of a self-assembled monolayer of thiolated 27-mer single-stranded DNA on the gold-coated side of a microcantilever and during the subsequent hybridization with the complementary nucleic acid. The immobilization of the single-stranded DNA probe gives a mean surface stress of 25 mN/m and a mean bending of 23 nm for microcantilevers with a length and thickness of about 200 microm and 0.8 microm, respectively. The hybridization with the complementary sequence could not be inferred from the nanomechanical response. The nanomechanical response was compared with data from well-established techniques such as surface plasmon resonance and radiolabeling, to determine the surface coverage and study the intermolecular forces between neighboring DNA molecules anchored to the microcantilever surface. From both techniques, an immobilization surface density of 3 x 10(12) molecules/cm(2) and a hybridization efficiency of 40% were determined. More importantly, label-free hybridization was clearly detected in the same conditions with a conventional sensor based on surface plasmon resonance. The results imply that the nanomechanical signal during the immobilization process arises mainly from the covalent attachment to the gold surface, and the interchain interactions between neighboring DNA molecules are weak, producing an undetectable surface stress. We conclude that detection of nucleic acid hybridization with nanomechanical sensors requires reference cantilevers to remove nonspecific signals, more sensitive microcantilever geometries, and immobilization chemistries specially addressed to enhance the surface stress variations.


Subject(s)
DNA/chemistry , Nucleic Acid Hybridization , Base Sequence , Nanotechnology , Nucleic Acid Conformation
9.
J Immunol ; 167(11): 6366-73, 2001 Dec 01.
Article in English | MEDLINE | ID: mdl-11714801

ABSTRACT

We have analyzed the mechanism implicated in the control of the anti-apoptotic role of Bcl-xL. We show that IL-4 deprivation induces apoptosis, but does not modulate Bcl-xL expression. Because Bcl-xL does not promote cell survival in the absence of IL-4, we investigate the mechanism by which Bcl-xL was unable to inhibit apoptosis. Using yeast two-hybrid system, coimmunoprecipitation, and indirect immunofluorescence techniques, we found that Bcl-xL interacts with the transcription factor Aiolos in IL-4-stimulated cells, increasing upon IL-4 deprivation. IL-4 does not promote translocation of Aiolos or Bcl-xL, but induces tyrosine phosphorylation of Aiolos, which is required for dissociation from Bcl-xL. Transfection experiments confirm that cells overexpressing Bcl-xL are able to prevent apoptosis in the absence of IL-4. On the contrary, cells that overexpress Bcl-xL and Aiolos are unable to block apoptosis in the absence of IL-4. We propose a model for the regulation of the Bcl-xL anti-apoptotic role via Aiolos.


Subject(s)
Apoptosis/immunology , Proto-Oncogene Proteins c-bcl-2/physiology , Trans-Activators/physiology , Animals , Apoptosis/genetics , Cell Line , Cell Survival/genetics , Cell Survival/immunology , Culture Media, Conditioned/metabolism , Cytoplasm/immunology , Cytoplasm/metabolism , Gene Expression Regulation/immunology , Humans , Ikaros Transcription Factor , Interleukin-4/metabolism , Interleukin-4/pharmacology , Mice , Phosphorylation , Proto-Oncogene Proteins c-bcl-2/biosynthesis , Proto-Oncogene Proteins c-bcl-2/genetics , Proto-Oncogene Proteins c-bcl-2/metabolism , Saccharomyces cerevisiae/genetics , Trans-Activators/genetics , Trans-Activators/metabolism , Transcription Factors , Transfection , Two-Hybrid System Techniques , Tyrosine/metabolism , bcl-X Protein
10.
J Biol Chem ; 276(30): 28372-9, 2001 Jul 27.
Article in English | MEDLINE | ID: mdl-11373289

ABSTRACT

CCL20/MIP-3alpha is a beta-chemokine expressed in the thymus, skin, and intestinal epithelial cells that exclusively binds and activates the CCR6 receptor in both mice and humans. The strict receptor binding specificity of CCL20 is exceptional; other chemokines and their receptors bind promiscuously with multiple partners. Toward determining the structural basis for the selective receptor specificity of CCL20, we have determined its three-dimensional structure by 1H NMR spectroscopy. CCL20 exhibits the same monomeric structure previously described for other chemokines: a three-stranded beta-sheet and an overlying alpha-helix. The CCL20 receptor selectivity could arise from the rigid conformation of the N-terminal DCCL motif as well as the groove between the N-loop and the beta2-beta3 hairpin, which is significantly narrower in CCL20 than in other chemokines. Similar structural features are seen in human beta-defensin 2, a small nonchemokine polypeptide reported to selectively bind and activate CCR6, which stresses their importance for the specific binding of both CCL20 and beta-defensin 2 to CCR6. CCL20's structure will be useful to design tools aimed to modulate its important biological functions.


Subject(s)
Chemokines, CC/chemistry , Chemokines, CC/metabolism , Dendritic Cells/metabolism , Lymphocytes/metabolism , Macrophage Inflammatory Proteins/chemistry , Macrophage Inflammatory Proteins/metabolism , Oxidative Stress , Receptors, Chemokine/metabolism , Amino Acid Motifs , Animals , Chemokine CCL20 , Chemotactic Factors/metabolism , Dimerization , Humans , Magnetic Resonance Spectroscopy , Mice , Models, Chemical , Models, Molecular , Protein Binding , Protein Conformation , Protein Folding , Protein Structure, Secondary , Receptors, CCR6 , beta-Defensins/chemistry
11.
J Immunol ; 166(1): 218-25, 2001 Jan 01.
Article in English | MEDLINE | ID: mdl-11123295

ABSTRACT

Developing T cells journey through the different thymic microenvironments while receiving signals that eventually will allow some of them to become mature naive T cells exported to the periphery. This maturation can be visualized by the phenotype of the developing cells. CCR8 is a ss-chemokine receptor preferentially expressed in the thymus. We have developed 8F4, an anti-mouse CCR8 mAb that is able to neutralize the ligand-induced activation of CCR8, and used it to characterize the CCR8 protein expression in the different thymocyte subsets. Taking into account the intrathymic lineage relationships, our data showed that CCR8 expression in thymus followed two transient waves along T cell maturation. The first one took place in CD4(-) CD8(-) double-negative thymocytes, which showed a low CCR8 expression, and the second wave occurred after TCR activation by the Ag-dependent positive selection in CD4(+) CD8(+) double-positive cells. From that maturation stage, CCR8 expression gradually increased as the CD4(+) cell differentiation proceeded, reaching a maximum at the CD4(+) CD8(-) single-positive stage. These CD4(+) cells expressing CCR8 were also CD69(high) CD62L(low) thymocytes, suggesting that they still needed to undergo some differentiation step before becoming functionally competent naive T cells ready to be exported from the thymus. Interestingly, no significant amounts of CCR8 protein were detectable in CD4(-) CD8(+) thymocytes. Our data showing a clear regulation of the CCR8 protein in thymus suggest a relevant role for CCR8 in this lymphoid organ, and identify CCR8 as a possible marker of thymocyte subsets recently committed to the CD4(+) lineage.


Subject(s)
CD4-Positive T-Lymphocytes/cytology , CD4-Positive T-Lymphocytes/metabolism , Receptors, Chemokine/biosynthesis , T-Lymphocyte Subsets/cytology , T-Lymphocyte Subsets/metabolism , Thymus Gland/cytology , Thymus Gland/metabolism , Animals , Antibodies, Monoclonal/biosynthesis , Antibodies, Monoclonal/metabolism , Antibodies, Monoclonal/pharmacology , Antibody Specificity , Binding Sites, Antibody/immunology , Binding, Competitive/immunology , CD28 Antigens/immunology , CD4-Positive T-Lymphocytes/immunology , Cell Differentiation/immunology , Cell Line , Cell Lineage/immunology , Chemokine CCL1 , Chemokines, CC , Cytokines/antagonists & inhibitors , Cytokines/pharmacology , Humans , Mice , Mice, Inbred BALB C , Mice, Inbred C57BL , Muromonab-CD3/pharmacology , Receptors, CCR8 , Receptors, Chemokine/antagonists & inhibitors , Receptors, Chemokine/immunology , Receptors, Chemokine/metabolism , T-Lymphocyte Subsets/immunology , Thymus Gland/immunology , Up-Regulation/immunology
12.
Mol Cell Biol ; 20(10): 3407-16, 2000 May.
Article in English | MEDLINE | ID: mdl-10779330

ABSTRACT

We have analyzed the interleukin-4 (IL-4)-triggered mechanisms implicated in cell survival and show here that IL-4 deprivation induces apoptotic cell death but does not modulate Bcl-2 or Bcl-x expression. Since Bcl-x expression is insufficient to ensure cell survival in the absence of IL-4, we speculate that additional molecules replace the antiapoptotic role of Bcl-2 and Bcl-x in an alternative IL-4-triggered pathway. Cell death is associated with Bcl-3 downregulation and Bcl-3 expression blocks IL-4 deprivation-induced apoptosis, suggesting that Bcl-3 acts as a survival factor in the absence of growth factor. To characterize the IL-4-induced regulation of murine Bcl-3 expression, we cloned the promoter of this gene. Sequencing of the promoter showed no TATA box element but did reveal binding sites for AP1, AP1-like, and SP1 transcription factors. Retardation gels showed that IL-4 specifically induces AP1 and AP1-like binding activity and that mutation of these binding sites abolishes the IL-4-induced Bcl-3 promoter activity, suggesting that these transcription factors are important in Bcl-3 promoter transactivation. IL-4 deprivation induces downregulation of Jun expression and upregulation of Fos expression, both of which are proteins involved in the formation of AP1 and AP1-like transcription factors. Overexpression of Jun family proteins transactivates the promoter and restores Bcl-3 expression in the absence of IL-4 stimulation. Taken together, these data describe a new biological role for Bcl-3 and define the regulatory pathway implicated in Bcl-3 expression.


Subject(s)
Interleukin-4/pharmacology , Promoter Regions, Genetic , Proto-Oncogene Proteins/genetics , T-Lymphocytes/cytology , Transcription Factor AP-1/metabolism , Animals , Apoptosis , B-Cell Lymphoma 3 Protein , Base Sequence , Cell Division , Cell Line , Cell Survival , Cloning, Molecular , Gene Expression Regulation , Mice , Molecular Sequence Data , Proto-Oncogene Proteins/biosynthesis , Proto-Oncogene Proteins c-bcl-2/metabolism , Proto-Oncogene Proteins c-jun/metabolism , Receptors, Interleukin-2/genetics , Sequence Analysis, DNA , Sequence Deletion , Transcription Factors , bcl-X Protein
13.
J Leukoc Biol ; 66(5): 837-44, 1999 Nov.
Article in English | MEDLINE | ID: mdl-10577517

ABSTRACT

Chemokines are involved in the control of dendritic cell (DC) trafficking, which is critical for the immune response. We have generated DC from human umbilical cord blood CD34+ progenitors cultured with granulocyte-macrophage colony-stimulating factor, tumor necrosis factor alpha (TNF-alpha), and stem cell factor. Using an anti-CCR6 monoclonal antibody, we observed that these cells showed maximum expression of this beta-chemokine receptor when they were immature, as determined by their relatively low expression of several DC maturation markers such as CD1a, CD11c, CD14, CD40, CD80, and CD83. Immature DC responded strongly to macrophage inflammatory protein-3alpha (MIP-3alpha), the CCR6 ligand, in migration and calcium mobilization assays. CCR6 expression decreased in parallel with the DC maturation induced by prolonged TNF-alphaq treatments. Interleukin-4 was also able to decrease CCR6 protein levels. Our findings suggest that the MIP-3alpha/CCR6 interaction plays an important role in the trafficking of immature DC to chemokine production sites such as injured or inflamed peripheral tissues, where DC undergo maturation on contact with antigens.


Subject(s)
Dendritic Cells/metabolism , Down-Regulation , Interleukin-4/metabolism , Macrophage Inflammatory Proteins , Receptors, Chemokine/biosynthesis , Tumor Necrosis Factor-alpha/metabolism , Animals , Antibodies, Monoclonal/biosynthesis , Cell Line , Chemokine CCL20 , Chemokines, CC/metabolism , Chemokines, CC/pharmacology , Dendritic Cells/drug effects , Humans , Interleukin-4/pharmacology , Mice , Mice, Inbred BALB C , Receptors, CCR6 , Receptors, Chemokine/genetics , Recombinant Proteins/metabolism , Recombinant Proteins/pharmacology , Spodoptera/cytology , Tumor Necrosis Factor-alpha/pharmacology
14.
J Immunol ; 162(10): 5671-5, 1999 May 15.
Article in English | MEDLINE | ID: mdl-10229797

ABSTRACT

Thymus-expressed chemokine (TECK) has been reported to chemoattract dendritic cells, thymocytes, and activated macrophages. Here, we show that TECK is a specific agonist for a human orphan receptor called GPR-9-6. We have determined the cDNA sequence of human GPR-9-6 and cloned the corresponding murine cDNA. Human and murine GPR-9-6 expression is very high in the thymus and low in lymph nodes and spleen. RT-PCR analysis of murine GPR-9-6 expression on murine FACS-sorted thymocyte subpopulations showed that this gene is expressed in both immature and mature T cells. Additions of human or murine TECK to HEK 293/human GPR-9-6 and HEK 293/murine GPR-9-6 transfectants provoked intracytoplasmic calcium mobilization. Human TECK also induced the in vitro migration of HEK 293/human GPR-9-6 cells. These results confirm that GPR-9-6 is a specific receptor for TECK. According to the established nomenclature system, we propose to rename GPR-9-6 as CC chemokine receptor 9 (CCR9).


Subject(s)
Chemokines, CC/metabolism , Receptors, Chemokine/genetics , Amino Acid Sequence , Animals , Calcium Signaling , Chemotaxis, Leukocyte , Cloning, Molecular , Humans , Ligands , Mice , Molecular Sequence Data , Protein Binding , RNA, Messenger/isolation & purification , Receptors, CCR , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Thymus Gland/cytology , Tissue Distribution
15.
FEBS Lett ; 440(1-2): 188-94, 1998 Nov 27.
Article in English | MEDLINE | ID: mdl-9862452

ABSTRACT

We have cloned the murine CCR6 receptor and its ligand, the beta-chemokine mMIP-3alpha. Calcium mobilization assays performed with mCCR6 transfectants showed significant responses upon addition of mMIP-3alpha. Murine MIP-3alpha RNA is expressed in thymus, small intestine and colon, whereas mCCR6 RNA is expressed in spleen and lymph nodes. RT-PCR analysis of FACS-sorted lymphoid and antigen presenting cell subsets showed mCCR6 expression mainly in B cells, CD8- splenic dendritic cells and CD4+ T cells. The cloning and functional characterization of the mCCR6 and mMIP-3alpha will allow the study of the role of these proteins in mouse models of inflammation and immunity.


Subject(s)
Chemokines, CC/genetics , Chemokines, CC/pharmacology , Cloning, Molecular , Gene Expression , Macrophage Inflammatory Proteins , Receptors, Chemokine/genetics , Amino Acid Sequence , Animals , Antigen-Presenting Cells/metabolism , Calcium Signaling/drug effects , Cell Line , Chemokine CCL20 , Chemokines, CC/chemical synthesis , Chemokines, CC/chemistry , Gene Library , Humans , Ligands , Lymphoid Tissue/metabolism , Mice , Molecular Sequence Data , Organ Specificity , Protein Sorting Signals , RNA, Messenger/analysis , RNA, Messenger/genetics , Receptors, CCR6 , Receptors, Chemokine/chemistry , Receptors, Chemokine/metabolism , Sequence Alignment , Transfection
16.
Virology ; 248(1): 12-9, 1998 Aug 15.
Article in English | MEDLINE | ID: mdl-9705251

ABSTRACT

The RGD (Arg-Gly-Asp) motif functions as a recognition site for adhesive proteins responsible for a number of cell-cell interactions. Certain viruses use this sequence as a receptor-binding site by interaction with cellular integrins. To elucidate the role of the RGD sequence of the phi29 terminal protein (TP), seven modified TPs were generated by site-directed mutagenesis. Most of the TP mutants were not efficiently used as primers, leading to a reduction of the TP-dAMP complex formation in the presence of the phi29 TP-DNA template. Moreover, these mutant TPs were poorly deoxyadenylylated by phi29 DNA polymerase in the absence of template. Analysis of primer TP/DNA polymerase complex formation showed that the modified TPs were affected in the formation of the heterodimeric complex. These results indicate that the RGD sequence present in phi29 TP is primarily involved in interaction with the viral DNA polymerase.


Subject(s)
Bacillus Phages/physiology , DNA Replication , DNA-Directed DNA Polymerase/metabolism , Oligopeptides , Viral Proteins/metabolism , Amino Acid Sequence , Bacillus Phages/genetics , Bacillus Phages/metabolism , Binding Sites , Deoxyadenine Nucleotides/metabolism , Dimerization , Molecular Sequence Data , Mutagenesis, Site-Directed , Point Mutation , Recombinant Proteins/biosynthesis , Recombinant Proteins/chemistry , Recombinant Proteins/metabolism , Templates, Genetic , Viral Proteins/biosynthesis , Viral Proteins/chemistry , Virus Replication
17.
J Immunol ; 160(4): 1975-81, 1998 Feb 15.
Article in English | MEDLINE | ID: mdl-9469461

ABSTRACT

Chemokine receptor-like 1 (CKR-L1) was described recently as a putative seven-transmembrane human receptor with many of the structural features of chemokine receptors. To identify the ligand of CKR-L1, we have studied chemokine-induced calcium mobilization in 293 cells transfected with CKR-L1. Of 20 different chemokines tested, only I-309 was able to elicit a significant calcium mobilization. In addition, I-309 induced the transfectants to migrate in vitro. As expected for chemokine receptor-mediated effects, pertussis toxin, but not cholera toxin, inhibited both the calcium flux and migration of the CKR-L1 transfectants in response to I-309. All of these data support the conclusion that I-309 is a functional ligand for CKR-L1. According to the current chemokine receptor nomenclature, we have designated this gene as CCR8. The murine CCR8 (mCCR8) gene was cloned, and its predicted amino acid sequence showed a 71% identity with that of human CCR8. As human CCR8, mCCR8 is expressed in thymus. Both I-309 and its murine homologue TCA-3 were able to induce calcium mobilization in transiently transfected 293-EBNA cells expressing mCCR8. The affinity of the binding of 125I-labeled TCA-3 to mCCR8 was high (Kd approximately 2 nM); the binding was prevented completely by an excess of cold TCA-3, and only partially competed (40%) by I-309. The identification of I-309 and TCA-3 as the functional ligands for CCR8 receptors will help to unravel the role of these proteins in physiologic and pathologic situations.


Subject(s)
Chemokines, CC/metabolism , Cytokines , Receptors, Chemokine/genetics , Receptors, Chemokine/metabolism , Receptors, Cytokine/metabolism , Amino Acid Sequence , Animals , Calcium/metabolism , Cell Line , Chemokine CCL1 , Chemokines, CC/physiology , Chemotaxis/drug effects , Cloning, Molecular , Humans , Iodine Radioisotopes , Kidney/cytology , Mice , Molecular Sequence Data , Receptors, CCR8 , Receptors, Chemokine/biosynthesis , Receptors, Chemokine/isolation & purification , Sequence Homology, Amino Acid , Transfection
18.
J Clin Invest ; 100(3): 497-502, 1997 Aug 01.
Article in English | MEDLINE | ID: mdl-9239395

ABSTRACT

The chemokines are a homologous serum protein family characterized by their ability to induce activation of integrin adhesion molecules and leukocyte migration. Chemokines interact with their receptors, which are composed of a single-chain, seven-helix, membrane-spanning protein coupled to G proteins. Two CC chemokine receptors, CCR3 and CCR5, as well as the CXCR4 chemokine receptor, have been shown necessary for infection by several HIV-1 virus isolates. We studied the effect of the chemokine monocyte chemoattractant protein 1 (MCP-1) and of a panel of MCP-1 receptor (CCR2)-specific monoclonal antibodies (mAb) on the suppression of HIV-1 replication in peripheral blood mononuclear cells. We have compelling evidence that MCP-1 has potent HIV-1 suppressive activity when HIV-1-infected peripheral blood lymphocytes are used as target cells. Furthermore, mAb specific for the MCP-1R CCR2 which recognize the third extracellular CCR2 domain inhibit all MCP-1 activity and also block MCP-1 suppressive activity. Finally, a set of mAb specific for the CCR2 amino-terminal domain, one of which mimics MCP-1 activity, has a potent suppressive effect on HIV-1 replication in M- and T-tropic HIV-1 viral isolates. We conjecture a role for CCR2 as a coreceptor for HIV-1 infection and map the HIV-1 binding site to the amino-terminal part of this receptor. This concurs with results showing that the CCR5 amino terminus is relevant in HIV-1 infection, although chimeric fusion of various extracellular domains shows that other domains are also implicated. We discuss the importance of CCR2 structure relative to its coreceptor role and the role of anti-CCR2 receptor antibodies in the prevention of HIV-1 infection.


Subject(s)
HIV Infections/virology , HIV-1/physiology , Receptors, Chemokine , Receptors, Cytokine/physiology , Signal Transduction , Virus Replication/physiology , Chemokine CCL2/pharmacology , HIV Infections/metabolism , Humans , Jurkat Cells , Receptors, CCR2 , Receptors, Cytokine/agonists , Virus Replication/drug effects
19.
Gene ; 195(2): 151-9, 1997 Aug 22.
Article in English | MEDLINE | ID: mdl-9305759

ABSTRACT

We report the molecular cloning of a novel gene family. The first member of this family was cloned from a mouse lambda gt11 cDNA library using the B92 monoclonal antibody (mAb) raised against stromal cell extracts. This was followed by RACE-PCR using mRNA from the stromal cell line. A 4 kb cDNA was obtained encoding a unique protein sequence of 1258 aa, that we designate stromal antigen (SA)-1. The human SA-1 gene was cloned by homology from a thymus cDNA library and the sequence of the predicted protein was found to be highly homologous to the murine SA-1 (>98.9%). Another cDNA was cloned and the deduced protein (SA-2) was 71% homologous to SA-1. Northern blot and PCR analysis indicated that on the mRNA level the SA-1 gene is expressed in all tissues analyzed and probably encodes a single transcript. The identification of SA-1 protein in tissues and cells required combined immunoprecipitation and Western blotting using a polyclonal antiserum raised against a predicted peptide of SA-1 and the B92 mAb. Using this assay we identified a protein of about 120 kDa in hemopoietic organs. Subcellular fractionation indicated that SA-1 is a nuclear protein. Thus, despite the ubiquitous expression on the mRNA level, the protein was predominantly detected in hemopoietic organs and may therefore be controlled on a post-transcriptional level. The SA-1 gene described in this study is highly conserved between mouse and man. This implies a crucial function for this protein.


Subject(s)
Gene Expression , Nuclear Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , Blotting, Western , Bone Marrow Cells/cytology , Bone Marrow Cells/metabolism , Cells, Cultured , Cloning, Molecular , Female , Gene Library , Humans , Lymphocytes/metabolism , Male , Mice , Mice, Inbred BALB C , Molecular Sequence Data , Neoplasms, Experimental/genetics , Neoplasms, Experimental/metabolism , Nuclear Proteins/chemical synthesis , Nuclear Proteins/metabolism , Peptides/chemical synthesis , Peptides/immunology , Polymerase Chain Reaction , Precipitin Tests , RNA, Messenger/genetics , RNA, Messenger/metabolism , Recombination, Genetic , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid , Stromal Cells , Thymus Gland/metabolism , Transcription, Genetic
20.
Eur J Endocrinol ; 135(6): 709-15, 1996 Dec.
Article in English | MEDLINE | ID: mdl-9025717

ABSTRACT

Thyroid hormone (triiodothyronine; T3) has been shown to control the expression of beta 1-adrenergic receptors (beta 1-AR) in cardiac myocytes, but not in C6 glioma cells. This cell specificity has been attributed to low expression of T3 receptors and high expression of the c-erbA alpha 2 splice variant that interferes with the action of T3. To check this hypothesis we have expressed the c-erbA/thyroid hormone receptor (TR) alpha 1 gene in C6 glioma cells and investigated their response to thyroid hormone. Cells expressing TR alpha 1, but not wild-type cells, were responsive to T3 as shown by increased expression of mitochrondrial hydroxymethylglutaryl CoA synthase after T3 exposure. However, T3 had no effect on beta 1-AR gene expression in either set of cells. The beta 1-AR mRNA concentrations were, however, altered by retinoic acid (RA) treatment. Retinoic acid caused a rapid up-regulation of beta 1-AR mRNA levels that was blocked by cycloheximide. Retinoic acid did not increase the beta 1-AR gene transcription rate in run-on experiments. These results indicate an indirect post-transcriptional effect of RA. Control of beta 1-AR expression in C6 cells is also exerted at the translational level, because there was no correlation between mRNA and protein induction, as determined by radioligand binding studies. We conclude that lack of responsiveness of the beta 1-AR gene in C6 cells to T3 is not due to high expression of c-erbA alpha 2 but to undefined cell-specific factors.


Subject(s)
Gene Expression Regulation, Neoplastic/genetics , Genes, erbA/genetics , Glioma/genetics , Receptors, Adrenergic, beta-1/genetics , Receptors, Thyroid Hormone/genetics , Transcriptional Activation/genetics , Tretinoin/pharmacology , Animals , Autoradiography , Blotting, Northern , Densitometry , Dihydroalprenolol/analysis , Dihydroalprenolol/metabolism , Gene Expression Regulation, Neoplastic/drug effects , Glioma/metabolism , RNA, Messenger/analysis , RNA, Messenger/genetics , Radioligand Assay , Rats , Receptors, Adrenergic, beta-1/metabolism , Receptors, Thyroid Hormone/metabolism , Time Factors , Transcriptional Activation/drug effects , Triiodothyronine/pharmacology , Tritium , Tumor Cells, Cultured
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