[Multinuclear blue copper-proteins: the evolutionary design].

The review presents both our and literature data of results of studies of pathways of evolution of the so-called multinuclear blue copper-proteins (MBCP) that have the domain organization. The MBCP are widely spread in living nature, they have been revealed in cells of archais, bacteria, and eukaryotes. Included in the MBCP composition are such different by their functions copper-proteins as oxidases, reductase, blood coagulation factors V and VIII. Most likely, MBCP have been originated from the low-molecular protein-precursor similar topologically with blue electron-transporting protein of the type of cupredoxin, as a result of action of various evolutionary mechanisms: amplification of genes, formation of protein structures by different combinations of domains, a change of size of domains, the segment elongation at the expense of the activational domain, formation and loss of various copper-binding centres, variation of amino acid ligands in such centres, the appearance of centres of binding of other proteins, glycosylation, etc.

Chemically modified porous silicon for laser desorption/ionization mass spectrometry of ionic dyes.

Desorption/ionization on silicon (DIOS) mass spectra of model ionic dyes methylene blue (MB+Cl-) and methyl orange (Na+MO-) were studied using p+ type-derived porous silicon (PS) free layers. As-prepared PS (PS-H), the PS thermally oxidized at 300 degrees C (PS-OX), PS with chemically grafted cation-exchanging alkylsulfonic acid (PS-SO(3)H) and anion-exchanging propyl-octadecyldimethylammonium chloride (PS-ODMA+Cl-) groups was tested as ionization platforms. Two mechanisms of the methylene blue desorption/ionization were found: (1) the formation of [MB + H]+* ion due to the reduction/protonation of MB+, which is predominant for PS-H and PS-OX platforms and (2) direct thermal desorption of the MB+ cation, prevailing for PS-SO3H. The fragmentation of the cation is significantly suppressed in the latter case. The samples of PS-SO3H and PS-ODMA+ Cl- efficiently adsorb the dyes of the opposite charge from their solutions via the ion-exchange. Consequent DIOS MS studies allow to detect only low fragmented ions (MB+ and MO-, respectively), demonstrating the potential of the ion-exchange adsorption combined with DIOS MS for the analysis of ionic organic compounds in solutions.

Organosilica composite for preconcentration of phenolic compounds from aqueous solutions.

A new adsorbent is proposed for the solid-phase extraction of phenol and 1-naphthol from polluted water. The adsorbent (TX-SiO(2)) is an organosilica composite made from a bifunctional immobilized layer comprising a major fraction (91%) of hydrophilic diol groups and minor fraction (9%) of the amphiphilic long-chain nonionic surfactant Triton X-100 (polyoxyethylated isooctylphenol) (TX). Under static conditions phenol was quantitatively extracted onto TX-SiO(2) in the form of a 4-nitrophenylazophenolate ion associate with cetyltrimethylammonium bromide. The capacity of TX-SiO(2) for phenol is 2.4 mg g(-1) with distribution coefficients up to 3.4 x 10(4) mL g(-1); corresponding data for 1-naphthol are 1.5 mg g(-1) and 3 x 10(3) mL g(-1). The distribution coefficient does not change significantly for solution volumes of 0.025-0.5 L and adsorbent mass less than 0.03 g; 1-90 microg analyte can be easily eluted by 1-3 mL acetonitrile with an overall recovery of 98.2% and 78.3% for phenol and 1-naphthol, respectively. Linear correlation between acetonitrile solution absorbance (A(540)) and phenol concentration (C) in water was found according to the equation A(540) = (6 +/- 1) x 10(-2) + (0.9 +/- 0.1) C (micromol L(-1)) with a detection range from 1 x 10(-8) mol L(-1) (0.9 microL g(-1)) to 2 x 10(-7) mol L(-1) (19 microL g(-1)), a limit of quantification of 1 microL g(-1) (preconcentration factor 125), correlation coefficient of 0.936, and relative standard deviation of 2.5%. A solid-phase colorimetric method was developed for quantitative determination of 1-naphthol on adsorbent phase using scanner technology and RGB numerical analysis. The detection limit of 1-naphthol with this method is 6 microL g(-1) while the quantification limit is 20 microL g(-1). A test system was developed for naked eye monitoring of 1-naphthol impurities in water. The proposed test kit allows one to observe changes in the adsorbent color when 1-naphthol concentration in water is 0.08-3.2 mL g(-1).

Synthesis, structure, and acidic properties of MCM-41 functionalized with phosphate and titanium phosphate groups.

Mesoporous molecular sieves Si-MCM-41 (purely siliceous) and Ti-MCM-41 (partly covered with a surface layer of TiO2) were functionalized with phosphate groups by treatment with POCl3 (denoted -MCM-41(P)and Ti-MCM-41(P), respectively). With the use of TEM, X-ray diffraction, and N2 adsorption, it was shown that the initial hexagonal structure, the high specific surface area, and porosity are retained in the functionalized materials but are not as good as in the starting materials. 1H MAS NMR and 31P MAS NMR revealed that the surface of Si-MCM-41(P) consists of silicon phosphate and pyrophosphate species. That of Ti-MCM-41(P) additionally contains titanium dihydro-, hydro-, and pyrophosphate species, the latter being predominant. TPD of adsorbed ammonia for Si-MCM-41(P) and Ti-MCM-41(P) showed that functionalization leads to the creation of moderate and strong acid sites. A combination of mesoporous structure with acidic properties makes the MCM-41 functionalized with phosphate groups promising for use as solid acid catalysts.

An X-ray crystallographic study of the binding sites of the azide inhibitor and organic substrates to ceruloplasmin, a multi-copper oxidase in the plasma.

Ceruloplasmin is a multi-copper oxidase, which contains most of the copper present in the plasma. It is an acute-phase reactant that exhibits a two- to three-fold increase over the normal concentration of 300 microg/ml in adult plasma. However, the precise physiological role(s) of ceruloplasmin has been the subject of intensive debate and it is likely that the enzyme has a multi-functional role, including iron oxidase activity and the oxidation of biogenic amines. The three-dimensional X-ray structure of the human enzyme was elucidated in 1996 and showed that the molecule was composed of six cupredoxin-type domains arranged in a triangular array. There are six integral copper atoms per molecule (mononuclear sites in domains 2, 4 and 6 and a trinuclear site between domains 1 and 6) and two labile sites with roughly 50% occupancy. Further structural studies on the binding of metal cations by the enzyme indicated a putative mechanism for ferroxidase activity. In this paper we report medium-resolution X-ray studies (3.0-3.5 A) which locate the binding sites for an inhibitor (azide) and various substrates [aromatic diamines, biogenic amines and (+)-lysergic acid diethylamide, LSD]. The binding site of the azide moiety is topologically equivalent to one of the sites reported for ascorbate oxidase. However, there are two distinct binding sites for amine substrates: aromatic diamines bind on the bottom of domain 4 remote from the mononuclear copper site, whereas the biogenic amine series typified by serotonin, epinephrine and dopa bind in close vicinity to that utilised by cations in domain 6 and close to the mononuclear copper. These binding sites are discussed in terms of possible oxidative mechanisms. The binding site for LSD is also reported.

[Multilevel automatic monitoring system for epidemiological tuberculous process in the north-western region, project and implementation]. / Mnogourovnevaia sistema avtomatizirovannogo slezheniia za épidemiologicheskim protsessom tuberkuleza na territorii severo-zapadnogo regiona, proekt i realizatsiia.

The paper proposes a variant how to solve the problem of complex automation of the work of antituberculous service by using the concept of building up a multilevel automatic informational and analytical system of antituberculous service at the regional level developed at the regional level. The programme product "statistical phthisiologist AMP" for the lower level of the area (urban) antituberculous dispensary which has been developed within this project is given.

Crystal structure of the superantigen staphylococcal enterotoxin type A.

Staphylococcal enterotoxins are prototype superantigens characterized by their ability to bind to major histocompatibility complex (MHC) class II molecules and subsequently activate a large fraction of T-lymphocytes. The crystal structure of staphylococcal enterotoxin type A (SEA), a 27 kDa monomeric protein, was determined to 1.9 A resolution with an R-factor of 19.9% by multiple isomorphous replacement. SEA is a two domain protein composed of a beta-barrel and a beta-grasp motif demonstrating the same general structure as staphylococcal enterotoxins SEB and TSST-1. Unique for SEA, however, is a Zn2+ coordination site involved in MHC class II binding. Four amino acids including Ser1, His187, His225 and Asp227 were found to be involved in direct coordination of the metal ion. SEA is the first Zn2+ binding enterotoxin that has been structurally determined.

Purification, characterization and preliminary X-ray study of fumarase from Saccharomyces cerevisiae.

Fumarase (fumarate hydratase, EC 4.2.1.2) from Saccharomyces cerevisiae has been purified to homogeneity by a method including acetone fractionation, DEAE ion-exchange and dye-sorbent affinity chromatography. The suggested method allows fumarase purification with a yield higher than 60% and may be used to obtain large enzyme quantities. The native protein consists of four subunits with a approximately 50 kDa molecular mass each and has an isoelectric point at pH 6.5 +/- 0.3. The equilibrium constant for fumarate hydration is about 4.3 (25 degrees C, pH 7.5), the Michaelis constants for fumarate and 1-malate are approximately 30 microM and approximately 250 microM, respectively. The enzyme is activated by substrates and multivalent anions, the activation seems to be of a non-competitive type. The fumarase complex with meso-tartaric acid has been crystallized by the vapor diffusion method. The unit cell parameters are a = 93.30, b = 94.05 and c = 106.07 A, space group P2(1)2(1)2(1). The unit cell contains 2 protein molecules. The crystals diffract to at least 2.6 A resolution and are suitable for X-ray structure analysis.

[Localization of active sites in human ceruloplasmin from data of intra- and intermolecular homology]. / Lokalizatsiia aktivnykh tsentrov v tseruloplazmine cheloveka po dannym vnutri- i mezhmolekuliarnoi gomologii.

The identification of possible copper ligands in human ceruloplasmin was carried out by the computer similarity analysis for sequences of ceruloplasmin and several other copper oxidases: azurin, plastocyanin, superoxide dismutase, tyrosinase and hemocyanin. It follows from the analysis of inter- and intramolecular homology that copper active sites of different types appeared to be in close contacts within the ceruloplasmin molecule.

The environment of the tryptophan residue in Pseudomonas aeruginosa azurin and its fluorescence properties.

Special analysis of the tryptophan residue localization in the structure of the macromolecule of Pseudomonas aeruginosa azurin made it possible to prove many explanations in the existing literature of the extraordinary fluorescence properties of this protein, to choose between various contradictory conclusions and in some cases even to make new interpretations of the known experimental data. It has been revealed that the microenvironment of the tryptophan residue is in principle formed by non-polar hydrocarbon groups. The density of the microenvironment is not very high and there are cavities around the ring. The conformation of the side chain of the tryptophan residue is unstrained. These results have been analysed in connection with available data on the unique short-wave fluorescence spectrum position and the existence of the high-frequency indole ring mobility with significant amplitude. Judging by the distance between tryptophan and tyrosine residues and their mutual orientation, the conclusion was made that there is no energy transfer from Tyr 72 to tryptophan and that the efficiency of the energy transfer from Tyr 108 to tryptophan is about 0.5. The mechanism of the dramatic increase in fluorescence efficiency when the copper atom is removed has been discussed with due regard to the fact that the 'blue' copper centre is displaced from the indole ring by more than 10 A.