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1.
Preprint in English | medRxiv | ID: ppmedrxiv-21258492

ABSTRACT

AO_SCPLOWBSTRACTC_SCPLOWHigh resolution mobility datasets have become increasingly available in the past few years and have enabled detailed models for infectious disease spread including those for COVID-19. However, there are open questions on how such a mobility data can be used effectively within epidemic models and for which tasks they are best suited. In this paper, we extract a number of graph-based proximity metrics from high resolution cellphone trace data from X-Mode and use it to study COVID-19 epidemic spread in 50 land grant university counties in the US. We present an approach to estimate the effect of mobility on cases by fitting an ODE based model and performing multivariate linear regression to explain the estimated time varying transmissibility. We find that, while mobility plays a significant role, the contribution is heterogeneous across the counties, as exemplified by a subsequent correlation analysis. We subsequently evaluate the metrics utility for case surge prediction defined as a supervised classification problem, and show that the learnt model can predict surges with 95% accuracy and 87% F1-score.

2.
Preprint in English | medRxiv | ID: ppmedrxiv-21254022

ABSTRACT

Social distancing measures, such as restricting occupancy at venues, have been a primary intervention for controlling the spread of COVID-19. However, these mobility restrictions place a significant economic burden on individuals and businesses. To balance these competing demands, policymakers need analytical tools to assess the costs and benefits of different mobility reduction measures.In this paper, we present our work motivated by our interactions with the Virginia Department of Health on a decision-support tool that utilizes large-scale data and epidemiological modeling to quantify the impact of changes in mobility on infection rates. Our model captures the spread of COVID-19 by using a fine-grained, dynamic mobility network that encodes the hourly movements of people from neighborhoods to individual places, with over 3 billion hourly edges. By perturbing the mobility network, we can simulate a wide variety of reopening plans and forecast their impact in terms of new infections and the loss in visits per sector. To deploy this model in practice, we built a robust computational infrastructure to support running millions of model realizations, and we worked with policymakers to develop an intuitive dashboard interface that communicates our models predictions for thousands of potential policies, tailored to their jurisdiction. The resulting decision-support environment provides policymakers with much-needed analytical machinery to assess the tradeoffs between future infections and mobility restrictions.

3.
Preprint in English | medRxiv | ID: ppmedrxiv-20236042

ABSTRACT

Reopening of colleges and universities for the Fall semester of 2020 across the United States has caused significant COVID-19 case spikes, requiring reactive responses such as temporary closures and switching to online learning. Until sufficient levels of immunity are reached through vaccination, Institutions of Higher Education will need to balance academic operations with COVID-19 spread risk within and outside the student community. In this work, we study the impact of proximity statistics obtained from high resolution mobility traces in predicting case rate surges in university counties. We focus on 50 land-grant university counties (LGUCs) across the country and show high correlation (PCC > 0.6) between proximity statistics and COVID-19 case rates for several LGUCs during the period around Fall 2020 reopenings. These observations provide a lead time of up to [~]3 weeks in preparing resources and planning containment efforts. We also show how features such as total population, population affiliated with university, median income and case rate intensity could explain some of the observed high correlation. We believe these easily explainable mobility metrics along with other disease surveillance indicators can help universities be better prepared for the Spring 2021 semester.

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