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1.
QJM ; 115(4): 228-234, 2022 Apr 20.
Article in English | MEDLINE | ID: mdl-33453113

ABSTRACT

BACKGROUND: The relationship of osteoporosis and stroke is still not fully clarified. Apart from the well-known risk factors for stroke, bone mineral density (BMD) has gained more interest in recent years. AIM: To further elucidate the relationship between BMD and stroke risk, a prospective cohort study in the Chinese rural population was conducted. DESIGN: Retrospective analysis of a family osteoporosis cohort. METHODS: Our subjects were selected from an osteoporosis cohort conducted in Anqing, China. All participants underwent a questionnaire assessment, clinical examinations and laboratory assessments. During the follow-up period, the number of people who had a stroke was recorded. Generalized estimating equation regression analysis was performed to determine the significance of the association between BMD and stroke. RESULTS: A total of 17868 people were included. A two-way interaction test of sex and BMD on stroke was significant (P = 0.002). There was a significant difference in BMD and stroke morbidity in the male group (P = 0.003). When BMD was assessed as quartiles and the lowest quartile was used as reference, a significantly lower risk for stroke was observed in Q2-4. Notably, no significant difference was observed in female participants with adjusted odds ratio (P > 0.05). The P-value for interaction was calculated. The body mass index (P = 0.014) and waist-to-hip ratio (P = 0.027) were found to be significantly associated with BMD and stroke risk in female participants. CONCLUSIONS: In Chinese rural areas, total BMD may negatively correlated with stroke, especially in men.


Subject(s)
Osteoporosis , Stroke , Bone Density , China/epidemiology , Cohort Studies , Female , Humans , Lumbar Vertebrae , Male , Osteoporosis/complications , Osteoporosis/epidemiology , Prospective Studies , Retrospective Studies , Risk Factors , Rural Population , Stroke/complications , Stroke/etiology
2.
PLoS One ; 13(1): e0190169, 2018.
Article in English | MEDLINE | ID: mdl-29320542

ABSTRACT

The Phoenicians emerged in the Northern Levant around 1800 BCE and by the 9th century BCE had spread their culture across the Mediterranean Basin, establishing trading posts, and settlements in various European Mediterranean and North African locations. Despite their widespread influence, what is known of the Phoenicians comes from what was written about them by the Greeks and Egyptians. In this study, we investigate the extent of Phoenician integration with the Sardinian communities they settled. We present 14 new ancient mitogenome sequences from pre-Phoenician (~1800 BCE) and Phoenician (~700-400 BCE) samples from Lebanon (n = 4) and Sardinia (n = 10) and compare these with 87 new complete mitogenomes from modern Lebanese and 21 recently published pre-Phoenician ancient mitogenomes from Sardinia to investigate the population dynamics of the Phoenician (Punic) site of Monte Sirai, in southern Sardinia. Our results indicate evidence of continuity of some lineages from pre-Phoenician populations suggesting integration of indigenous Sardinians in the Monte Sirai Phoenician community. We also find evidence of the arrival of new, unique mitochondrial lineages, indicating the movement of women from sites in the Near East or North Africa to Sardinia, but also possibly from non-Mediterranean populations and the likely movement of women from Europe to Phoenician sites in Lebanon. Combined, this evidence suggests female mobility and genetic diversity in Phoenician communities, reflecting the inclusive and multicultural nature of Phoenician society.


Subject(s)
Demography , Ethnicity/history , Genome, Mitochondrial , Human Migration/history , Women , Adolescent , Adult , Child , Culture , DNA, Mitochondrial/analysis , DNA, Mitochondrial/isolation & purification , Ethnicity/genetics , Female , Genetic Variation , Haplotypes , History, Ancient , Humans , Italy , Lebanon/ethnology , Mediterranean Region , Phylogeny , Population Dynamics , Tooth
3.
Semin Ophthalmol ; 30(2): 150-3, 2015 Mar.
Article in English | MEDLINE | ID: mdl-24117413

ABSTRACT

PURPOSE: To describe the use of a Boston type I keratoprosthesis as a secondary penetrating procedure to treat gelatinous drop-like corneal dystrophy (GDLD), with presentation of pathologic findings, genetic analysis, and discussion of other surgical options. METHODS: A 43-year-old woman with GDLD in both eyes, best corrected visual acuity (BCVA) of counting fingers in both eyes, and recurrent corneal opacification following two penetrating keratoplasties presented for visual rehabilitation. A Boston type I keratoprosthesis was implanted in her left eye after extracapsular clear lens extraction. RESULTS: The surgery was uneventful and one month after surgery, best corrected vision improved to 20/30, which has been maintained for a period of more than nine months. At the 12-month visit, her vision was noted to be diminished to 20/200 due to a retroprosthetic membrane and improved to 20/25 two weeks after a Yag capsulotomy. Histopathologic examination of the corneal specimen disclosed predominantly subepithelial amyloid deposition. Genetic analysis is presented. CONCLUSIONS: GDLD is a rare disorder of primary corneal amyloidosis. Recurrence of this condition following surgery is very common. Boston type I keratoprosthesis as a secondary procedure can be successful in restoring vision in affected patients.


Subject(s)
Amyloidosis, Familial/surgery , Bioartificial Organs , Corneal Dystrophies, Hereditary/surgery , Graft Rejection/surgery , Prosthesis Implantation , Adult , Amyloidosis, Familial/genetics , Amyloidosis, Familial/physiopathology , Antigens, Neoplasm/genetics , Cell Adhesion Molecules/genetics , Consanguinity , Corneal Dystrophies, Hereditary/genetics , Corneal Dystrophies, Hereditary/physiopathology , Corneal Transplantation , Female , Graft Rejection/diagnosis , Humans , Lens, Crystalline/surgery , Mutation , Prostheses and Implants , Visual Acuity/physiology
4.
Gene Ther ; 18(5): 445-51, 2011 May.
Article in English | MEDLINE | ID: mdl-21150937

ABSTRACT

The nuclear factor-κB (NF-κB) is known to be activated in many cancer types including lung, ovarian, astrocytomas, melanoma, prostate as well as glioblastoma, and has been shown to correlate with disease progression. We have cloned a novel NF-κB-based reporter system (five tandem repeats of NF-κB responsive genomic element (NF; 14 bp each)) to drive the expression cassette for both a fusion between the yeast cytosine deaminase and uracil phosphoribosyltransferase (CU) as a therapeutic gene and the secreted Gaussia luciferase (Gluc) as a blood reporter, separated by an internal ribosomal entry site (NF-CU-IGluc). We showed that malignant tumor cells have high expression of Gluc, which correlates to high activation of NF-κB. When NF-κB was further activated by tumor necrosis factor-α in these cells, we observed up to 10-fold increase in Gluc levels and therefore transgene expression in human glioma cells served to greatly enhance the sensitization of these cells to the prodrug, 5-fluorocytosine both in cultured cells and in vivo subcutaneous tumor xenograft model. This inducible system provides a tool to enhance the expression of imaging and therapeutic genes for cancer therapy.


Subject(s)
Genes, Transgenic, Suicide , Genetic Therapy/methods , NF-kappa B/genetics , Promoter Regions, Genetic , Animals , Cell Line, Tumor , Enzyme Activation , Flucytosine/metabolism , Humans , In Vitro Techniques , Lentivirus/genetics , Mice , Mice, Nude , NF-kappa B/metabolism , Neoplasm Transplantation , Tumor Necrosis Factor-alpha/genetics
5.
Ann Dermatol Venereol ; 136(1): 28-31, 2009 Jan.
Article in French | MEDLINE | ID: mdl-19171226

ABSTRACT

BACKGROUND: Anhidrotic ectodermal dysplasia is a rare inherited disorder seen mainly in the X-linked recessive form. We report the case of a Lebanese family in which the mother transmitted an uncommon missense mutation to three of her sons. PATIENTS AND METHODS: A 23-year-old patient presented with keloids in nodular acne. The physical examination showed fine and sparse hair, thick everted lips and dental defects. A detailed history revealed congenital anhidrosis. The patient's, seven-year-old and four-year-old brothers had the same characteristic facial morphology and were also presenting anhidrosis. The mother had hypodontia. The parents, though not consanguineous, were from the same village. Genetic testing with sequencing of the EDA1 gene revealed a missense mutation affecting codon 155. DISCUSSION: Ectodermal dysplasias are currently found in more than 150 syndromes. The patient's history and the clinical signs suggest the X-linked recessive form of anhidrotic ectodermal dysplasia due to a mutation in EDA1 gene encoding the ectodysplasin. The mutation found in this family is very rare and was mentioned once in a study on splicing forms that permit detection of all EDA1 mutations. Besides, this patient tolerated oral isotretinoin perfectly well, unlike another case reported once in the literature. Finally, genetic counselors must inform carrier mothers of the high recurrence rate among male offspring.


Subject(s)
Ectodermal Dysplasia/genetics , Ectodysplasins/genetics , Mutation, Missense , Codon , Dermatologic Agents/therapeutic use , Ectodermal Dysplasia/pathology , Exons , Humans , Isotretinoin/therapeutic use , Male , Young Adult
8.
Ann Hum Genet ; 69(Pt 1): 55-66, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15638828

ABSTRACT

Beta thalassemia is an autosomal recessive disorder characterized by reduced (beta(+)) or absent (beta(0)) beta-globin chain synthesis. In Lebanon it is the most predominant genetic defect. In this study we investigated the religious and geographic distribution of the beta-thalassemia mutations identified in Lebanon, and traced their precise origins. A total of 520 beta-globin chromosomes from patients of different religious and regional backgrounds was studied. Beta thalassemia mutations were identified using Amplification Refractory Mutation System (ARMS) PCR or direct gene sequencing. Six (IVS-I-110, IVS-I-1, IVS-I-6, IVS-II-1, cd 5 and the C > T substitution at cd 29) out of 20 beta-globin defects identified accounted for more than 86% of the total beta-thalassemia chromosomes. Sunni Muslims had the highest beta-thalassemia carrier rate and presented the greatest heterogeneity, with 16 different mutations. Shiite Muslims followed closely with 13 mutations, whereas Maronites represented 11.9% of all beta-thalassemic subjects and carried 7 different mutations. RFLP haplotype analysis showed that the observed genetic diversity originated from both new mutational events and gene flow from population migration. This study provides information about the types and distribution of beta-thalassemia mutations within each religious group and geographic region, which is essential for the implementation of screening and prevention programs.


Subject(s)
Emigration and Immigration , Genetic Heterogeneity , Genetics, Population , Globins/genetics , Mutation/genetics , beta-Thalassemia/genetics , Gene Frequency , Genetic Testing , Geography , Haplotypes/genetics , Humans , Lebanon , Polymorphism, Restriction Fragment Length , beta-Thalassemia/epidemiology
9.
Am J Hematol ; 75(4): 220-4, 2004 Apr.
Article in English | MEDLINE | ID: mdl-15054814

ABSTRACT

Beta-thalassemia is the most common genetic disorder in the Lebanese population. Of the 200 different mutations in the beta-globin gene that leads to thalassemia, the IVSI-110 (29.87%), IVSI-6 (20.74%), IVSI-1 (14.07%), IVSII-1 (9.13%), Cd29 (9.13%), and Cd30 (3.95%) mutations are the most frequent among Lebanese thalassemic patients. These mutations are also present at high frequencies in the East Mediterranean region. Due to this high prevalence of certain beta-thalassemia mutations, a rapid technique for the prenatal diagnosis of these mutations was implemented. The technique used is based on Real-Time PCR quantification and melting curve analysis of the amplified fragment using the LightCycler. The DNA samples used for amplification were obtained from CVS or amniotic fluid. Six mutations were easily and efficiently detected using only 3 sets of probes. With this method, mutant genotypes can be easily distinguished from normal alleles. In prenatal diagnosis, the accuracy and the speed of testing are paramount. The method of prenatal beta-thalassemia mutations detection described here is efficient and fast, with the entire procedure including DNA preparation taking less than half a workday. It is safe, does not involve radioactivity, and is accurate showing 100% concordance with conventional DNA sequencing methods.


Subject(s)
Genetic Testing/methods , Globins/genetics , Mutation , Prenatal Diagnosis/methods , beta-Thalassemia/diagnosis , beta-Thalassemia/genetics , Base Sequence , DNA Mutational Analysis/methods , Genotype , Humans , Oligonucleotide Probes/genetics , Polymerase Chain Reaction/methods
10.
East Mediterr Health J ; 10(4-5): 671-5, 2004.
Article in English | MEDLINE | ID: mdl-16335661

ABSTRACT

A direct correlation between HIV infection and mutation in the chemokine receptor (CCR5) gene has been established. However, such correlation has never been investigated in Lebanon. We report the frequency of the CCR5-delta 32 mutation in a random sample of 209 healthy, HIV-1 seronegative Lebanese aged 19-68. Overall, 4.8% were heterozygous for the mutation. Homozygosity was absent from our sample. The frequency for the CCR5-delta 32 allele was 2.5%. Distribution of the mutation was unaffected by sex, age, religion or educational level. The frequency in the Lebanese population is consistent with that in the origin of the mutation in northern Europe. This could be attributed to a gene flow into the Middle East from northern Europe.


Subject(s)
Gene Frequency/genetics , Mutation/genetics , Receptors, CCR5/genetics , Adult , Aged , Analysis of Variance , Blood Donors , Female , Frameshift Mutation/genetics , Gene Deletion , Gene Flow/genetics , Genetics, Population , Genotype , HIV Seronegativity , Heterozygote , Homozygote , Hospitals, Teaching , Humans , Lebanon , Male , Middle Aged , Polymerase Chain Reaction , Population Surveillance , Surveys and Questionnaires
11.
(East. Mediterr. health j).
in English | WHO IRIS | ID: who-119466

ABSTRACT

A direct correlation between HIV infection and mutation in the chemokine receptor [CCR5] gene has been established. However, such correlation has never been investigated in Lebanon. We report the frequency of the CCR5-delta 32 mutation in a r and om sample of 209 healthy, HIV-1 seronegative Lebanese aged 19-68. Overall, 4.8% were heterozygous for the mutation. Homozygosity was absent from our sample. The frequency for the CCR5-delta 32 allele was 2.5%. Distribution of the mutation was unaffected by sex, age, religion or educational level. The frequency in the Lebanese population is consistent with that in the origin of the mutation in northern Europe. This could be attributed to a gene flow into the Middle East from northern Europe


Subject(s)
Receptors, CCR5 , Lebanon
12.
J Pediatr Endocrinol Metab ; 16(5): 759-69, 2003 Jun.
Article in English | MEDLINE | ID: mdl-12880126

ABSTRACT

The effect of a number of host and environmental factors on the onset of type 1 diabetes mellitus (DM1) in a group of Lebanese children and young adults was studied. Results showed that DM1 in a group of 253 patients presented no gender preference and that the age of onset was similar in both genders. The overall body mass index reflected good metabolic control. HbA1c had a mean value of 8.98%, suggesting poor glucose control. Family history of DM1 and type 2 diabetes mellitus as well as consanguinity in patients' families were not different from those reported in the literature. Finally, onset of DM1 showed seasonal variation, peaking during winter months. DM1 showed a higher prevalence of onset among children born first and a decreased incidence as birth order increased. This study provides valuable data for the diagnosis, control and prevention of DM1 in children.


Subject(s)
Diabetes Mellitus, Type 1/epidemiology , Adolescent , Age of Onset , Animals , Birth Order , Body Mass Index , Breast Feeding/statistics & numerical data , Child , Consanguinity , Diabetes Mellitus, Type 1/genetics , Diabetes Mellitus, Type 2/epidemiology , Diabetes Mellitus, Type 2/genetics , Family Health , Female , Genetic Predisposition to Disease/epidemiology , Glycated Hemoglobin/analysis , Humans , Incidence , Lebanon/epidemiology , Male , Milk , Prevalence , Risk Factors , Seasons , Sex Distribution
14.
Eur J Haematol ; 70(2): 79-83, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12581188

ABSTRACT

Sickle cell disease (SCD) is an inherited autosomal recessive disorder of the beta-globin chain. Despite the fact that all subjects with SCD have the same single base pair mutation, the severity of the clinical and hematological manifestations is extremely variable. This study examined for the first time in Lebanon the correlation between the clinical manifestation of SCD and the beta-globin gene haplotypes. The haplotypes of 50 patients diagnosed with SCD were determined using polymerase chain reaction amplification of fragments containing nine polymorphic restriction sites around and within the epsilon-Ggamma-Agamma-psibeta-delta-beta-globin gene complex. Most reported haplotypes were found in our population with the Benin haplotype as the most prevalent one. When the patients were divided according to their HbF levels into three groups (Group A: HbF < 5%, Group B: HbF between 5 and 15%, and Group C: HbF > 15%), surprisingly, the highest levels of HbF were associated with the most severe clinical cases. Our findings suggest that fetal hemoglobin levels are important but not the only parameters that affect the severity of the disease. In addition, the high levels of HbF in patients with CAR haplotypes did not seem to ameliorate the severity of symptoms, suggesting that genetic factors other than haplotypes are the major determinants of increased HbF levels in Lebanon.


Subject(s)
Anemia, Sickle Cell/etiology , Fetal Hemoglobin/metabolism , Globins/genetics , Haplotypes , Adolescent , Adult , Anemia, Sickle Cell/epidemiology , Child , Child, Preschool , Female , Humans , Infant , Lebanon/epidemiology , Male , Multigene Family , Pain , Phenotype , Polymorphism, Restriction Fragment Length
15.
Eur J Gynaecol Oncol ; 23(5): 429-32, 2002.
Article in English | MEDLINE | ID: mdl-12440818

ABSTRACT

PURPOSE: The purpose of this study was to determine the prevalence of human papillomavirus (HPV), and more specifically of HPV 16, in a group of Lebanese women. MATERIALS AND METHODS: Type-specific prevalence of cervical HPV and the presence of cytological abnormalities were determined in a cohort of Lebanese women. The population included 1,026 women, 18-76 years, seeking routine gynecological care at a tertiary care center. Demographic and behavioral data were collected. HPV DNA was detected in cervical scrapes by polymerase chain reaction using consensus primers. Cervical cytological abnormalities were identified by Papanicoleau (Pap) smears. RESULTS: The mean age of our population was 40 +/- 11.3 years. General HPV DNA was detected in 50 patients (4.9%). The high-risk HPV type 16 DNA was detected in 31 patients (3%). Patients with HPV 16 were more likely to have an abnormal pap smear than those with negative tests (6.6% vs 1.6%, p < 0.05), and more likely, but not significantly, to be smokers (21.4% vs 18.4%, p = 0.5). The age-specific prevalence of HPV increased with age and peaked at 60-69 years. CONCLUSIONS: The prevalence of HPV in this small group of Lebanese women is similar to its prevalence in the Mediterranean countries. The presence of HPV, its known association with the development of cervical neoplasia, and the lack of a universal screening program for cervical cancer in our country should be used to enforce implementation of proper screening programs.


Subject(s)
Papillomaviridae/isolation & purification , Papillomavirus Infections/epidemiology , Tumor Virus Infections/epidemiology , Uterine Cervical Dysplasia/epidemiology , Adolescent , Adult , Age Distribution , Aged , Base Sequence , Chi-Square Distribution , DNA, Viral/analysis , Female , Health Surveys , Humans , Lebanon/epidemiology , Middle Aged , Molecular Sequence Data , Papanicolaou Test , Papillomavirus Infections/diagnosis , Pilot Projects , Polymerase Chain Reaction , Prevalence , Probability , Risk Factors , Tumor Virus Infections/diagnosis , Uterine Cervical Dysplasia/diagnosis , Vaginal Smears
16.
J Endocrinol Invest ; 25(8): 724-6, 2002 Sep.
Article in English | MEDLINE | ID: mdl-12240905

ABSTRACT

Several reports suggest that insulin may have a role in the regulation of serum leptin levels, and this is related to the fact that serum leptin levels generally indicate the amount of body fat. Studies show that leptin levels are low in newly diagnosed patients with Type-1 diabetes (T1 DM) and increase after institution of insulin therapy. This study was designed to test whether serum leptin levels are higher in patients receiving intensive insulin therapy (IIT) compared to conventional insulin therapy (CIT). Young patients with T1 DM were studied, 23 on IIT and 23 on CIT. The patients were matched for age (19+/-3 and 20+/-5 yr, respectively), duration of diabetes (8+/-5 and 10+/-6 yr, respectively) and BMI (24+/-4 and 23+/-3 kg/m2, respectively). Leptin levels were higher in IIT compared to CIT (13+/-12 vs 7+/-7 ng/ml, respectively, p<0.05). The results of this study demonstrate that patients on IIT have higher leptin levels than patients on CIT. This increase in leptin level in IIT patients is independent of changes in bw and is probably due to the stimulatory effect of insulin on leptin production.


Subject(s)
Diabetes Mellitus, Type 1/blood , Diabetes Mellitus, Type 1/drug therapy , Hypoglycemic Agents/administration & dosage , Insulin/administration & dosage , Leptin/blood , Adult , Blood Glucose/analysis , Drug Administration Schedule , Female , Humans , Male
17.
J Clin Endocrinol Metab ; 87(7): 3192-6, 2002 Jul.
Article in English | MEDLINE | ID: mdl-12107223

ABSTRACT

Type-1 diabetes (T1D) is an autoimmune disease leading to insulin deficiency. Its occurrence is influenced by genetic and environmental factors. The human leukocyte antigen (HLA) region on chromosome 6 accounts for 45% of the genetic susceptibility for the disease, mainly the HLA-DQB1*0201 and HLA-DQB1*0302 alleles. Among the environmental factors involved, early exposure to cow's milk seems to be a trigger. In this study, we investigated the occurrence of T1D in 253 Lebanese Caucasian patients, in relation to HLA-DQB1*0201, HLA-DQB1*0302, HLA-DQB1*0602, gender, and early exposure to cow's milk, as well as to family history of T1D and type-2 diabetes (T2D). Our genetic analysis results show that in the patients studied, 77% and 40% were positive for BQ1*0201 and BQ1*0302, respectively. As for BQ1*0602, only 0.8% of patients were positive for this T1D protective allele, compared with 24% among the controls. Furthermore, our results did not show any gender preference of the disease or any effects of early intake of cow's milk on the age at onset of T1D. When family history of T2D or T1D was studied, our results show a novel finding whereby an immediate family history of T2D, but not T1D, delays the age at onset of T1D.


Subject(s)
Diabetes Mellitus, Type 1/epidemiology , Diabetes Mellitus, Type 2/genetics , Medical Records , Adult , Age of Onset , Animals , Drinking , Female , Genotype , HLA Antigens/analysis , Humans , Male , Milk
18.
Proc Natl Acad Sci U S A ; 98(18): 10244-9, 2001 Aug 28.
Article in English | MEDLINE | ID: mdl-11526236

ABSTRACT

The nonrecombining portion of the human Y chromosome has proven to be a valuable tool for the study of population history. The maintenance of extended haplotypes characteristic of particular geographic regions, despite extensive admixture, allows complex demographic events to be deconstructed. In this study we report the frequencies of 23 Y-chromosome biallelic polymorphism haplotypes in 1,935 men from 49 Eurasian populations, with a particular focus on Central Asia. These haplotypes reveal traces of historical migrations, and provide an insight into the earliest patterns of settlement of anatomically modern humans on the Eurasian continent. Central Asia is revealed to be an important reservoir of genetic diversity, and the source of at least three major waves of migration leading into Europe, the Americas, and India. The genetic results are interpreted in the context of Eurasian linguistic patterns.


Subject(s)
Genetic Variation , Y Chromosome/genetics , Adult , Alleles , Asia , Biological Evolution , Europe , Genetics, Population , Haplotypes , Humans , Male , Polymorphism, Genetic
19.
Endocr Res ; 27(1-2): 99-108, 2001.
Article in English | MEDLINE | ID: mdl-11428725

ABSTRACT

Genetic factors are involved in the development of diabetic nephropathy in type-1 diabetes. We are examining the association of the angiotensin-converting enzyme (ACE), insertion/deletion (I/D) polymorphism with the presence of diabetic nephropathy in type-1 diabetic patients. 52 type-1 diabetic patients with diabetic nephropathy (30 with either microalbuminuria or macroalbuminuria and 22 with end stage renal disease on dialysis) were compared with 10 type-1 diabetic patients with normoalbuminuria and duration of disease longer than 15 years and 27 non-diabetic healthy subjects. We found that the D-allele frequency was higher in patients with nephropathy than in the healthy and normoalbuminuric controls. There was an association in the DD polymorphism of the ACE gene with patients with diabetic nephropathy and not with the control subjects. We conclude that the DD genotype of ACE gene polymorphism is associated with diabetic nephropathy in patients with type-1 diabetes mellitus.


Subject(s)
Diabetes Mellitus, Type 1/genetics , Diabetic Nephropathies/genetics , Genotype , Peptidyl-Dipeptidase A/genetics , Polymorphism, Genetic , Adult , Albuminuria , Alleles , Diabetes Mellitus, Type 1/enzymology , Diabetic Nephropathies/enzymology , Female , Gene Frequency , Humans , Male
20.
Virology ; 219(1): 1-8, 1996 May 01.
Article in English | MEDLINE | ID: mdl-8623518

ABSTRACT

Each of the two genomic RNAs of tobacco ringspot nepovirus is known to have a 5'-linked protein, the VPg. We report a simplified analysis of the covalent VPg-RNA connection that allowed us to identify the 5' nucleotide residue of each genomic RNA and its phosphodiester link to a specific serine residue of the VPg, without resorting to in vivo labeling with 32P, in vitro radioiodination, or separation of the two genomic RNAs. Unfractionated genomic RNA was incubated with an oligodeoxyribonucleotide specific for the 5' region of either RNA 1 or RNA 2 and ribonuclease H. Reaction products were 3'-end-labeled and were fractionated by gel electrophoresis. The most highly labeled product derived from each genomic RNA was identified as a VPg-oligoribonucleotide (VPg-5'-oligo) by its sensitivity to proteinase. In a presumed beta-elimination reaction that apparently was more rapid than phosphodiester cleavage, incubation in alkaline sodium bicarbonate released a rapidly migrating product, 5'-oligo. Phosphatase-treated 5'-oligo accepted 5'-label in a polynucleotide kinase-catalyzed reaction, and uridylate was identified as the 5' terminal residue for both RNA 1 and RNA 2. Results from Edman degradation of the VPg suggest that the VPg is linked at serine 5 to the 5' uridylate of each genomic RNA.


Subject(s)
Nepovirus/metabolism , RNA, Viral/metabolism , RNA-Binding Proteins/metabolism , Viral Core Proteins/metabolism , Amino Acid Sequence , Base Sequence , Fabaceae/virology , Molecular Sequence Data , Nepovirus/genetics , Oligodeoxyribonucleotides/metabolism , Plants, Medicinal , Ribonuclease H/metabolism , Structure-Activity Relationship
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