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1.
Biotechnol Biofuels ; 14(1): 180, 2021 Sep 13.
Article in English | MEDLINE | ID: mdl-34517884

ABSTRACT

BACKGROUND: Microalgae are coming to the spotlight due to their potential applications in a wide number of fields ranging from the biofuel to the pharmaceutical sector. However, several factors such as low productivity, expensive harvesting procedures and difficult metabolite extractability limit their full utilization at industrial scale. Similarly to the successful employment of enzymatic arsenals from lignocellulolytic fungi to convert lignocellulose into fermentable sugars for bioethanol production, specific algalytic formulations could be used to improve the extractability of lipids from microalgae to produce biodiesel. Currently, the research areas related to algivorous organisms, algal saprophytes and the enzymes responsible for the hydrolysis of algal cell wall are still little explored. RESULTS: Here, an algal trap method for capturing actively growing microorganisms was successfully used to isolate a filamentous fungus, that was identified by whole-genome sequencing, assembly and annotation as a novel Penicillium sumatraense isolate. The fungus, classified as P. sumatraense AQ67100, was able to assimilate heat-killed Chlorella vulgaris cells by an enzymatic arsenal composed of proteases such as dipeptidyl- and amino-peptidases, ß-1,3-glucanases and glycosidases including α- and ß-glucosidases, ß-glucuronidase, α-mannosidases and ß-galactosidases. The treatment of C. vulgaris with the filtrate from P. sumatraense AQ67100 increased the release of chlorophylls and lipids from the algal cells by 42.6 and 48.9%, respectively. CONCLUSIONS: The improved lipid extractability from C. vulgaris biomass treated with the fungal filtrate highlighted the potential of algal saprophytes in the bioprocessing of microalgae, posing the basis for the sustainable transformation of algal metabolites into biofuel-related compounds.

2.
J Appl Microbiol ; 131(4): 1932-1941, 2021 Oct.
Article in English | MEDLINE | ID: mdl-33759285

ABSTRACT

AIMS: The characterization of grape and apple yeasts was carried out to investigate the ecology of basidiomycetes associated with crop environment and fermenting juice. METHODS AND RESULTS: A total of 15 basidiomycetous strains were analysed for plant-growth promoting properties, sensitivity to fungicides and features related to their survival in fermenting juice (low pH, SO2 and ethanol sensitivity). Only one strain displayed 1-aminocyclopropane-1-carboxylate deaminase activity, whereas other strains were able to produce ammonia and indole-3-acetic acid, solubilize calcium phosphate, and display catalase activity and antagonism against Botrytis cinerea. Strains presented great variability in their sensitivity to fungicides. Rhodotorula mucilaginosa Yl26 and Sporobolomyces agrorum PYCC 8108T displayed low sensitivity to all fungicides, with high tolerance to SO2 and ethanol, and were able to survive in fermenting grape and apple juice. CONCLUSIONS: This study revealed the diversity of basidiomycetous yeasts in the important physiological traits that affect their growth, either in the crop environment or in fermenting juice. SIGNIFICANCE AND IMPACT OF THE STUDY: Identify the possibility of selective effects of fungicide treatments on basidiomycetous yeasts that could offer benefits for grapevines and apple trees, as well as the survival of strains that are better adapted to fermenting juice and that potentially have a role in the aroma of beverages.


Subject(s)
Malus , Vitis , Wine , Botrytis , Fermentation , Rhodotorula , Wine/analysis , Yeasts
3.
Int J Food Microbiol ; 272: 83-86, 2018 May 02.
Article in English | MEDLINE | ID: mdl-29550687

ABSTRACT

The effects of noble rot infection of grapes on the characteristics of different types of wine, including Italian passito wine, are well known. Nevertheless, there is still little information on filamentous fungi associated with noble-rotten grapes. In this study, withered Garganega grapes for passito wine production, naturally infected by noble rot, were analyzed and compared to sound grapes. Skin morphology and fungal population on berry surfaces were analyzed. Scanning electron microscopy analysis revealed microcracks, germination conidia and branched hyphae on noble-rotten berries. Penicillium, Aureobasidium and Cladosporium were the most frequent genera present. Analysis of single berries displayed higher heterogeneity of epiphytic fungi in those infected by noble-rot than in sound berries. Penicillium adametzoides, Cladosporium cladospoirioides and Coniochaeta polymorpha were recovered. These, to the best of our knowledge, had never been previously isolated from withered grapes and, for C. polymorpha, from grapevine. This study provided novel data on noble rot mycobiota and suggests that fungi that co-habit with B. cinerea could have an important role on grape and wine quality.


Subject(s)
Ascomycota/isolation & purification , Botrytis/isolation & purification , Cladosporium/isolation & purification , Penicillium/isolation & purification , Vitis/microbiology , Wine/microbiology , Ascomycota/growth & development , Botrytis/growth & development , Cladosporium/growth & development , Fruit/microbiology , Italy , Penicillium/growth & development
4.
Int J Food Microbiol ; 238: 56-62, 2016 Dec 05.
Article in English | MEDLINE | ID: mdl-27591387

ABSTRACT

Filamentous fungi are the main pathogens of withered grapes destined for passito wine production. Knowledge of which species inhabit these post-harvest fruits and their pathogenicity is essential in order to develop strategies to control infection, but is still scarce. This study investigated the predominant mycobiota of withered grapes through a cultivation-dependent approach. Strain and species heterogeneity was evidenced on examining isolates collected over three consecutive years. Colony morphology and PCR-restriction fragment length polymorphism (PCR-RFLP) analysis revealed the occurrence of several phenotypes and haplotypes, respectively. Strains were phylogenetically analyzed based on sequence typing of different genes or regions (e.g. calmodulin, ß-tubulin and internal transcribed spacer region). Beside the most common necrotrophic-saprophytic species of Penicillium, Aspergillus, Alternaria and Botrytis species responsible for fruit rot, other saprobic species were identified (e.g. Trichoderma atroviride, Sarocladium terricola, Arthrinium arundinis and Diaporthe eres) generally not associated with post-harvest fruit diseases. Species such as Penicillium ubiquetum, Cladosporium pseudocladosporioides, Lichtheimia ramosa, Sarocladium terricola, Diaporthe nobilis, Bipolaris secalis, Paraconiothyrium fuckelii and Galactomyces reessii that had never previously been isolated from grapevine or grape were also identified. Moreover, it was not possible to assign a species to some isolates, while some members of Didymosphaeriaceae and Didymellaceae remained unclassified even at genus level. This study provides insights into the diversity of the epiphytic fungi inhabiting withered grapes and evidences the importance of their identification to understand the causes of fruit diseases. Finally, phylogenetic species delimitation furnished data of interest to fungal taxonomy.


Subject(s)
Biodiversity , Fruit/microbiology , Fungi/classification , Fungi/genetics , Phylogeny , Polymorphism, Restriction Fragment Length , Vitis/microbiology , Alternaria/classification , Alternaria/genetics , Alternaria/isolation & purification , Ascomycota/classification , Ascomycota/genetics , Ascomycota/isolation & purification , Aspergillus/classification , Aspergillus/genetics , Aspergillus/isolation & purification , Botrytis/classification , Botrytis/genetics , Botrytis/isolation & purification , Food Microbiology , Fungi/isolation & purification , Penicillium/classification , Penicillium/genetics , Penicillium/isolation & purification , Polymerase Chain Reaction , Wine/microbiology
5.
J Appl Microbiol ; 119(5): 1335-44, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26274522

ABSTRACT

AIMS: There is scarce information on the occurrence of several fungi that infect withered grapes to produce passito wine. Isolation and characterization of Neofusicoccum parvum strains and evaluation of their effects on withered grape and wine were carried out. METHODS AND RESULTS: Nine isolates were phenotypically characterized by colony morphology and genetically discriminated by molecular methods. Two representative strains were identified as N. parvum according to the phylogenetic analysis of internal transcribed spacer (ITS), and a part of translation elongation factor 1-alfa (TEF) and ß-tubulin DNA sequences. The pathogenicity of both strains on grape berries varied according to the inoculation and incubation conditions. Under withering conditions, infected berries showed browning and shrivelling and some berries showed pycnidial development on the surface. The infection affected laccase, esterase, ß-glucosidase and tannase on grape juice as well as the content of several aroma molecules on resulting wines. Strain-specific effects on wine composition were also observed. CONCLUSIONS: Neofusicoccum parvum occurred in withered grapes and was able to infect grapes under withering condition changing the aroma wine. SIGNIFICANCE AND IMPACT OF THE STUDY: This study reports for the first time the N. parvum isolation in fruit-drying rooms and indicates its important role on postharvest grape infection.


Subject(s)
Ascomycota/isolation & purification , Ascomycota/pathogenicity , Plant Diseases/microbiology , Vitis/microbiology , Wine/microbiology , Ascomycota/genetics , Ascomycota/metabolism , Fruit/microbiology , Humans , Molecular Sequence Data , Phylogeny , Taste , Virulence , Wine/analysis
6.
J Appl Microbiol ; 114(3): 762-70, 2013 Mar.
Article in English | MEDLINE | ID: mdl-23163324

ABSTRACT

AIMS: To investigate the interactions between Botrytis cinerea and other moulds during grape withering and postharvest infection to obtain noble-rotten grapes. METHODS AND RESULTS: Strains of Botrytis cinerea, Penicillium expansum, Penicillium crustosum, Aspergillus niger, Fusarium verticilloides and Alternaria alternata, isolated from naturally withered grapes and identified by molecular tools, were used to infect Garganega and Corvina grapes. Individually sterilized berries were infected by a single inoculation of each strain or a simultaneous inoculation of B. cinerea together with one of each of the other moulds. Withering kinetics, glycerol, gluconic acid, total polyphenols, total anthocyanins and laccase activity greatly varied among each strain and also in respect to untreated berries. Successful noble rot settlement was ascertained by an additional infection assay carried out on nonsterilized berries. CONCLUSIONS: The suitability of inducing noble rot infection during grape withering and the improvement of the health of noble-rotten grapes have been demonstrated. SIGNIFICANCE AND IMPACT OF THE STUDY: This study provides insights on the effects of mould interactions on withered grape quality. Implementing noble rot induction by postharvest infection in winery drying fruit rooms to standardize the level of grape botrytization is encouraged.


Subject(s)
Botrytis/physiology , Food Microbiology , Fungi/physiology , Vitis/microbiology , Anthocyanins/analysis , Botrytis/genetics , Fungi/isolation & purification , Genotype , Gluconates/analysis , Glycerol/analysis , Laccase/metabolism , Wine/microbiology
7.
J Appl Microbiol ; 113(5): 1087-96, 2012 Nov.
Article in English | MEDLINE | ID: mdl-22897221

ABSTRACT

AIMS: To investigate the Oenococcus oeni population occurring during spontaneous malolactic fermentation (MLF) of Amarone wine, a peculiar and hostile environment for malolactic bacteria. METHODS AND RESULTS: Pulsed-field gel electrophoresis (PFGE) analysis showed a high level of genetic heterogeneity within the O. oeni population involved in MLF throughout an industrial vinification of Amarone wine. The 13 strains with distinct PFGE profile displayed different capability to hydrolyse esters and glycosides, as well as great variability to growth under stress parameters, such as high ethanol content (15% v/v), low pH (3·0) and temperature (15°C), and presence of SO(2). Moreover, polymorphism in the gene sacB involved in exopolysaccharide production was observed among the strains. The strains showed differences to convert l-malic acid into l-lactic acid in wine. CONCLUSIONS: The occurrence of spontaneous MLF in stressful ecosystems such as Amarone wine is related to the heterogeneity of O. oeni community; biodiversity indexes and strain evolution analyses suggested that its success depends on its initial strain evenness. SIGNIFICANCE AND IMPACT OF THE STUDY: Remarkable intraspecies complexity within the O. oeni natural population could explain the great versatility of this species as key of successful adaptation to harsh winemaking conditions.


Subject(s)
Fermentation , Oenococcus/genetics , Wine/microbiology , Biodiversity , DNA, Bacterial/genetics , Electrophoresis, Gel, Pulsed-Field , Esters/metabolism , Genes, Bacterial , Glycosides/metabolism , Lactic Acid/metabolism , Malates/metabolism , Oenococcus/growth & development , Oenococcus/metabolism , Phenotype , Polysaccharides/biosynthesis , Stress, Physiological , Wine/analysis
8.
Int J Food Microbiol ; 148(3): 184-90, 2011 Aug 15.
Article in English | MEDLINE | ID: mdl-21683465

ABSTRACT

The lysozyme of hen's egg white is used in winemaking to control spontaneous lactic acid bacteria (LAB). A total of eight LAB strains, isolated from grape must and wine, were used to assess the inhibitory effects of wine phenolics on lysozyme activity. The presence of phenolics, extracted from grape pomace, in growth medium reduced the mortality rate due to the lysozyme activity. This effect was especially clear in the case of strains belonging to Lactobacillus uvarum, Pediococcus parvulus and Oenococccus oeni, which are more sensitive to lysozyme than L. plantarum and L. hilgardii strains. Cell lysis assays carried out on four strains sensitive to lysozyme and Micrococcus lysodeikticus ATCC 4698, used as a reference strain, confirmed the inhibition of grape pomace phenolics on the muramidase. There was no interference from non-flavonoids, flavanols and flavonol compounds, when they were tested individually, on the lysozyme activity against the strains. Anthocyanins extracted from grape skins slightly inhibited the activity only against M. lysodeikticus. However, proanthocyanidins extracted from seed berries, strongly inhibited the lysozyme. In this extract, dimers were the predominant oligomers of flavan-3-ol. The study demonstrated that the effectiveness of lysozyme against LAB in red winemaking is related to the amount of low molecular weight proanthocyanidins that are released when the grapes are macerating.


Subject(s)
Flavonoids/pharmacology , Lactobacillaceae/drug effects , Muramidase/antagonists & inhibitors , Phenols/pharmacology , Proanthocyanidins/pharmacology , Wine/microbiology , Anthocyanins/pharmacology , Fruit/chemistry , Molecular Weight , Polyphenols , Vitis/chemistry
9.
J Appl Microbiol ; 107(1): 210-8, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19245401

ABSTRACT

AIMS: To explain the role of Saccharomyces cerevisiae and Saccharomyces uvarum strains (formerly Saccharomyces bayanus var. uvarum) in wine fermentation. METHODS AND RESULTS: Indigenous Saccharomyces spp. yeasts were isolated from Amarone wine (Italy) and analysed. Genotypes were correlated to phenotypes: Melibiose(-) and Melibiose(+) strains displayed a karyotype characterized by three and two bands between 225 and 365 kb, respectively. Two strains were identified by karyotype analysis (one as S. cerevisiae and the other as S. uvarum). The technological characterization of these two strains was conducted by microvinifications of Amarone wine. Wines differed by the contents of ethanol, residual sugars, acetic acid, glycerol, total polysaccharides, ethyl acetate, 2-phenylethanol and anthocyanins. Esterase and beta-glucosidase activities were assayed on whole cells during fermentation at 13 degrees and 20 degrees C. Saccharomyces uvarum displayed higher esterase activity at 13 degrees C, while S. cerevisiae displayed higher beta-glucosidase activity at both temperatures. CONCLUSIONS: The strains differed by important technological and qualitative traits affecting the fermentation kinetics and important aroma components of the wine. SIGNIFICANCE AND IMPACT OF THE STUDY: The contribution of indigenous strains of S. cerevisiae and S. uvarum to wine fermentation was ascertained under specific winemaking conditions. The use of these strains as starters in a winemaking process could differently modulate the wine sensory characteristics.


Subject(s)
Anthocyanins/metabolism , Esterases/metabolism , Ethanol/metabolism , Saccharomyces cerevisiae/metabolism , Saccharomyces/metabolism , Wine/microbiology , Acetic Acid/metabolism , Fermentation , Glycerol/metabolism , Italy , Karyotyping , Phenotype , Quaternary Ammonium Compounds/metabolism , Saccharomyces/genetics , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/isolation & purification , beta-Glucosidase/metabolism
10.
Int J Food Microbiol ; 127(3): 241-5, 2008 Oct 31.
Article in English | MEDLINE | ID: mdl-18707788

ABSTRACT

The Amplified Fragment Length Polymorphism (AFLP) technique was applied for the first time to investigate the genotyping of Oenococcus oeni, the most important species involved in malolactic fermentation (MLF) in wine. A total of 87 out of 220 lactic acid bacteria, isolates from "Primitivo" wine (Apulia, Italy) undergoing MLF, identified as O. oeni by species-specific PCR and 16S rRNA sequence analysis, were studied by AFLP analysis. Four main clusters were distinguished and three of them showed intraspecific homology higher than 60%. A total of 28 strains, representative of AFLP clusters, were tested for malate metabolism in order to gain information on their malolactic performances. Significant differences were observed among strains for malic acid consumed, biomass produced and specific malic acid consumption rate. These findings indicated that AFLP technique is reliable for typing O. oeni strains and that, together with metabolism studies it may be used to individuate possible candidates as industrial malolactic starters.


Subject(s)
Leuconostoc , Malates/metabolism , Polymorphism, Restriction Fragment Length , RNA, Ribosomal, 16S/genetics , Wine/microbiology , Cluster Analysis , DNA, Bacterial/genetics , Fermentation , Food Microbiology , Gene Amplification , Genotype , Leuconostoc/classification , Leuconostoc/genetics , Leuconostoc/growth & development , Leuconostoc/metabolism , Phylogeny , Polymerase Chain Reaction/methods , Sequence Analysis, DNA , Species Specificity
11.
J Dairy Sci ; 91(3): 883-91, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18292243

ABSTRACT

This work aimed to investigate the effects of thermal treatments and yeast extract addition on the composition of the microbial community of natural whey starters for Grana Padano cheese. Different natural whey starter samples were held at 4 degrees C for 24 h (cooling treatment), or at -20 degrees C for 24 h (freezing treatment) to evaluate the possibility of conservation, or at 54 degrees C for 1 h (heat treatment) to evaluate the effect of the temperature commonly used during curd cooking. Separately, another set of samples was enriched with 0.3, 0.5, and 1.0% (wt/vol) of yeast extract to study its effect on the growth of lactic acid bacteria (LAB) in the starter. The new approach in this study is the use of 2 culture-independent methods: length heterogeneity (LH)-reverse transcription (RT)-PCR and fluorescence microscopy. These techniques allowed us to easily, quickly, and reproducibly assess metabolically active LAB in the control and treated samples. The LH-RT-PCR technique distinguished microorganisms based on natural variations in the length of 16S rRNA amplified by RT-PCR, as analyzed by using an automatic gene sequencer. Fluorescence microscopy counts were performed by using a Live/Dead BacLight bacterial viability kit. The repeatability of LH-RT-PCR showed that this technique has great potential to reveal changes in the microbial community of natural whey starters for Grana Padano cheese. All species showed low sensitivity to cold (4 degrees C). However, after the freezing (-20 degrees C) and heating (54 degrees C) treatments, different behaviors of the species were reported, with significant changes in their viability and relative composition. Heating treatment during curd cooking profoundly affected the viability and composition of the community that remained in the cheese and that consequently modified the microbial population. At the same time, this treatment produced the selection of LAB in whey and could be considered as the first step in natural whey starter production. Addition of yeast extract stimulated the growth of Streptococcus thermophilus and Lactobacillus delbrueckii ssp. lactis to the detriment of Lactobacillus helveticus species. Because the yeast extract altered the microflora balance, whey starter conservation at -20 degrees C and yeast extract addition cannot be suggested as technological innovations.


Subject(s)
Cheese/microbiology , Food Handling/methods , Milk/chemistry , Animals , Cold Temperature , Freezing , Hot Temperature , Lactobacillus/genetics , Lactobacillus/growth & development , Microscopy, Fluorescence , RNA, Ribosomal, 16S/analysis , Reproducibility of Results , Reverse Transcriptase Polymerase Chain Reaction , Streptococcus thermophilus/genetics , Streptococcus thermophilus/growth & development
12.
J Appl Microbiol ; 102(3): 787-95, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17309629

ABSTRACT

AIMS: A contribution towards the elucidation of the mechanisms of tannins on bacteria growth inhibition, with particular focus on the interaction between tannins and bacterial proteins. METHODS AND RESULTS: The interaction between tannic acid (TA) and Lactobacillus hilgardii, a wine spoilage bacterium, was investigated by a combination of physiologic and proteomic approaches. Growing tests were performed on medium supplemented with TA at concentrations ranging from 100 to 1000 mg l(-1) demonstrating the inhibitory effect of TA on the growth rate. Total proteins extracted from cells unexposed and exposed to TA were then analysed by 2D-electrophoresis and significant quantitative variations with a marked decrease of protein intensity upon TA exposure were observed. Most of the proteins, identified by ESI tandem Mass Spectrometry, were metabolic enzymes of different pathways, located in cytoplasm and membrane. CONCLUSIONS: The effects of TA on cells are deduced by the involvement of metabolic enzymes, and functional proteins on the tannin-protein interaction. These results might be related to the altered functions of the cell metabolism. SIGNIFICANCE AND IMPACT OF THE STUDY: The possible role of tannins in the inhibition of the bacterial survival and growth in a natural environment such as wine. A similar approach could be applied for evaluating the effects of tannins on food borne and pathogenic bacteria.


Subject(s)
Lactobacillus/growth & development , Proteomics/methods , Tannins/metabolism , Amino Acid Sequence , Culture Media , Electrophoresis, Gel, Two-Dimensional/methods , Food Microbiology , Lactobacillus/metabolism , Plant Proteins/analysis , Tandem Mass Spectrometry/methods , Wine/microbiology
13.
Lett Appl Microbiol ; 40(6): 466-72, 2005.
Article in English | MEDLINE | ID: mdl-15892744

ABSTRACT

AIMS: The study of the fermentation performance of Saccharomyces cerevisiae strains under high sugar stress during the vinification of partially dried grapes. METHODS AND RESULTS: Microvinification of partially dried grape must with sugar concentration of 35 degrees Brix was performed using four commercial strains to carry out alcoholic fermentation. A traditional red vinification without nutrients addition was applied. Yeasts displayed different efficiency to convert sugar in ethanol and varied in glycerol yield. Sugar consumption and ethanol level were attested at 80-87% and 143.5-158.0 g l(-1) respectively. High correlation between sugar and assimilable nitrogen consumption rate was observed. Statistical treatment of data by principal component analysis highlighted the different behaviours that strains exhibited in regard to the production of higher alcohols and other compounds important to wine quality. CONCLUSIONS: Saccharomyces cerevisiae strains displayed appreciable capability to overcome osmotic stress and to yield ethanol fermenting high sugar concentration grape must in winemaking condition. SIGNIFICANCE AND IMPACT OF THE STUDY: The results provided insights on the strain contribution to wine quality subordinate to stress condition. This investigation is of applicative interest for winemaking and processing industry that use high sugar concentration musts.


Subject(s)
Saccharomyces cerevisiae/metabolism , Vitis/microbiology , Wine/microbiology , Carbohydrate Metabolism , Ethanol/metabolism , Fermentation , Food Microbiology , Glycerol/metabolism , Italy , Nitrogen/metabolism , Saccharomyces cerevisiae/growth & development , Wine/analysis
14.
Lett Appl Microbiol ; 39(1): 48-54, 2004.
Article in English | MEDLINE | ID: mdl-15189287

ABSTRACT

AIMS: Physiological comparison of two indigenous Oenococcus oeni strains, U1 and F3 isolated in the same area (Valpolicella, Italy) in order to select a performant starter for MLF in wine. METHODS AND RESULTS: Growth rate, sugar and malate metabolism in FT80 media at pH 5.3 and 3.5 were analysed. The amount of total protein synthesized and the level of expression of the small Hsp Lo18 were evaluated by radiolabelling and immunodetection experiments after heat (42 degrees C), acid (pH 3.5) and ethanol (12% v/v) stresses. Strain U1 showed significantly lower specific growth rate and growth yield in acid conditions than strain F3. However, strain U1 had a higher malate consumption capacity at pH 3.5 than strain F3, in relation with an higher malolactic activity determined on whole cells. Strain U1 exhibited about half the total protein synthesis level than strain F3, but both strains expressed Lo18 similarly. Evaluation of malolactic fermentation (MLF) performance by microvinification trials was carried out. Strain U1 was able to complete MLF, whereas strain F3 degraded malic acid partially when inoculated in Amarone wine. CONCLUSIONS: Considering its performances in microvinifications experiments, strain U1 could be a good candidate for malolactic starter as an alternative to deficient commercial starters.


Subject(s)
Gram-Positive Cocci/metabolism , Lactic Acid/metabolism , Malates/metabolism , Wine/microbiology , Ethanol/pharmacology , Fermentation , Gram-Positive Cocci/classification , Gram-Positive Cocci/isolation & purification , Heat-Shock Proteins/metabolism , Heat-Shock Response , Hot Temperature , Hydrogen-Ion Concentration , Italy , Leuconostoc/classification , Leuconostoc/growth & development , Leuconostoc/isolation & purification , Leuconostoc/metabolism
15.
Lett Appl Microbiol ; 38(3): 239-44, 2004.
Article in English | MEDLINE | ID: mdl-14962047

ABSTRACT

AIMS: To develop a multiplex PCR assay for the specific identification and differentiation of Saccharomyces cerevisiae, S. bayanus and their hybrids. METHODS AND RESULTS: Two sets of primers with sequences complementary to the region YBR033w were used. A single amplicon of 1710 bp or 329 bp was obtained with species S. cerevisiae and S. bayanus, respectively, while the presence of both bands was observed in S. pastorianus because of its hybrid nature. Both amplification products were also obtained after amplification from DNA of several laboratory S. cerevisiae x S. bayanus hybrid strains. CONCLUSIONS: Multiplex PCR was optimized for the rapid and reliable identification of S. cerevisiae, S. bayanus and their hybrids. SIGNIFICANCE AND IMPACT OF THE STUDY: The procedure may be used for routine detection of the most common Saccharomyces sensu stricto yeasts involved in industrial fermentation processes, overcoming the problems of conventional techniques.


Subject(s)
Polymerase Chain Reaction/methods , Saccharomyces cerevisiae/classification , Saccharomyces/classification , Saccharomyces/genetics , DNA, Fungal/analysis , DNA, Fungal/isolation & purification , Electrophoresis, Agar Gel , Genes, Fungal , Genome, Fungal , Mycological Typing Techniques , Polymorphism, Genetic , Saccharomyces cerevisiae/genetics
16.
Lett Appl Microbiol ; 35(5): 370-4, 2002.
Article in English | MEDLINE | ID: mdl-12390483

ABSTRACT

AIMS: Physiological and molecular analysis such as PCR species-specific and randomly amplified polymorphic PCR (RAPD-PCR) have been used for typing of Lactobacillus plantarum strains from typical wine must. METHODS AND RESULTS: Phenotypic tests such as API 50CH and evaluation of D-L-lactate production from glucose were used to perform a preliminary characterization of lactobacilli. Furthermore, 18 strains of lactobacilli were analyzed by PCR species-specific oligonucleotides based on short sequences of the recA gene. CONCLUSIONS: Four strains were identified as belonging to the L. plantarum species and were further analysed by RAPD-PCR. The RAPD-PCR profiles were similar in all strains that had positive results for species-specific PCR, suggesting that the four L. plantarum strains were closely related. SIGNIFICANCE AND IMPACT OF THE STUDY: Using PCR species-specific as a preliminary screening test and then RAPD-PCR can be as considered the most reliable method of performing a rapid and correct typing of L. plantarum from wine must.


Subject(s)
Bacteriocins/isolation & purification , Carbohydrates/analysis , Polymerase Chain Reaction/methods , Random Amplified Polymorphic DNA Technique/methods , Sensitivity and Specificity , Wine/microbiology , Bacteriocins/analysis , Carbohydrate Metabolism , Carbohydrates/classification , DNA Primers
17.
J Microbiol Methods ; 45(2): 127-34, 2001 Jun.
Article in English | MEDLINE | ID: mdl-11311398

ABSTRACT

The potential of using flow cytometry (FCM) in combination with fluorescent dyes for rapidly estimating counts of yeasts and malolactic bacteria in laboratory media and wines was examined. In general, there was a good correlation (regression coefficient, 0.94) between viable counts of yeasts determined by FCM and by standard plate assay. The FCM detection limit of yeasts in YPDE medium and in Pinot noir must was 10(3) cells/ml. The lowest bacterial concentration detected by FCM was 10(4) cells/ml. When yeast and malolactic bacteria populations were simultaneously analysed in wine by FCM without any previous sample treatment, difficulties were encountered in the count of bacterial cells due to their size, which is similar to natural debries present in wine. However, after the optimisation of the sample preparation, the technique appeared promising in determining the presence of such microorganisms in wine with one single measurement. Because it is rapid and easy to use, flow cytometry can be considered a useful method for microbiological quality control in wineries and for the investigation of the growth dynamics of microorganisms in wine.


Subject(s)
Flow Cytometry/methods , Lactobacillaceae/isolation & purification , Saccharomyces cerevisiae/isolation & purification , Wine/microbiology , Colony Count, Microbial , Fluorescent Dyes/chemistry , Food Microbiology
18.
Curr Microbiol ; 40(6): 351-5, 2000 Jun.
Article in English | MEDLINE | ID: mdl-10827275

ABSTRACT

Genetic diversity of 60 Oenococcus oeni strains from different wines was evaluated by numerical analysis of (i) pulsed-field gel electrophoresis (PFGE) patterns with endonuclease ApaI and (ii) randomly amplified polymorphic DNA (RAPD)-PCR fingerprints with four oligonucleotide primers. Sixty-two percent of the strains could be distinguished by PFGE, whereas most strains were identified by distinct RAPD-PCR profiles and associated according to the geographical origin. Because of its rapidity and reliability, RAPD-PCR appeared to be a suitable method for typing and monitoring O. oeni strains in winemaking.


Subject(s)
DNA Fingerprinting , Gram-Positive Cocci/genetics , Deoxyribonucleases, Type II Site-Specific/analysis , Deoxyribonucleases, Type II Site-Specific/genetics , Electrophoresis, Gel, Pulsed-Field , Gram-Positive Cocci/enzymology , Leuconostoc/enzymology , Leuconostoc/genetics , Random Amplified Polymorphic DNA Technique , Wine/microbiology
19.
Appl Environ Microbiol ; 65(10): 4351-6, 1999 Oct.
Article in English | MEDLINE | ID: mdl-10508059

ABSTRACT

Two PCR-based methods, specific PCR and randomly amplified polymorphic DNA PCR (RAPD-PCR), were used for rapid and reliable differentiation of Lactobacillus delbrueckii subsp. bulgaricus and L. delbrueckii subsp. lactis. PCR with a single combination of primers which targeted the proline iminopeptidase (pepIP) gene of L. delbrueckii subsp. bulgaricus allowed amplification of genomic fragments specific for the two subspecies when either DNA from a single colony or cells extracted from dairy products were used. A numerical analysis of the RAPD-PCR patterns obtained with primer M13 gave results that were consistent with the results of specific PCR for all strains except L. delbrueckii subsp. delbrueckii LMG 6412(T), which clustered with L. delbrueckii subsp. lactis strains. In addition, RAPD-PCR performed with primer 1254 provided highly polymorphic profiles and thus was superior for distinguishing individual L. delbrueckii strains.


Subject(s)
Lactobacillus/classification , Polymerase Chain Reaction , Aminopeptidases/genetics , Lactobacillus/genetics , Random Amplified Polymorphic DNA Technique
20.
Antonie Van Leeuwenhoek ; 75(3): 207-15, 1999 Apr.
Article in English | MEDLINE | ID: mdl-10427409

ABSTRACT

Individual yeast strains belonging to the Saccharomyces sensu stricto complex were isolated from Amarone wine produced in four cellars of the Valpolicella area (Italy) and characterized by conventional physiological tests and by RAPD-PCR and mtDNA restriction assays. Thirteen out of 20 strains were classified as Saccharomyces cerevisiae (ex S. cerevisiae p.r. cerevisiae and p.r. bayanus) and the remaining as Saccharomyces bayanus (ex S. cerevisiae p.r. uvarum). RAPD-PCR method proved to be a fast and reliable tool for identification of Saccharomyces sensu stricto strains and also gave intraspecific differentiation. Restriction analysis of mtDNA permitted to distinguish S. cerevisiae and S. bayanus species and to discern polymorphism among S. cerevisiae isolates. The assessment of the phenotypic diversity within the isolates by gas-chromatographic analysis of secondary fermentation products was explored. Small quantities of isobutanol were produced by most of the strains and higher amounts by some S. cerevisiae strains with phenotypes Gal- and Mel-; all S. bayanus strains produced low amounts of amilyc alcohols. From this study it appears that each winery owns particular strains, with different genetic and biochemical characteristics, selected by specific environmental pressures during the Amarone winemaking process carried out at low temperature in presence of high sugar content.


Subject(s)
Genetic Variation , Saccharomyces/classification , Saccharomyces/genetics , Wine/microbiology , Cluster Analysis , DNA, Fungal/chemistry , DNA, Fungal/genetics , DNA, Mitochondrial/chemistry , DNA, Mitochondrial/genetics , Deoxyribonucleases, Type II Site-Specific/metabolism , Fermentation , Genotype , Mycological Typing Techniques , Phenotype , Polymerase Chain Reaction , Random Amplified Polymorphic DNA Technique , Saccharomyces/isolation & purification , Saccharomyces cerevisiae/classification , Saccharomyces cerevisiae/genetics , Saccharomyces cerevisiae/isolation & purification
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