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1.
J Biomol Struct Dyn ; 37(13): 3566-3582, 2019 08.
Article in English | MEDLINE | ID: mdl-30284510

ABSTRACT

Two novel, neutral and water soluble Pd(II) complexes of formula [Pd(Gly)(Ala)] (1) and [Pd(Gly)(Val)] (2) (Gly, Ala, and Val are anionic forms of glycine, alanine, and valine amino acids, respectively) have been synthesized and characterized by FT-IR, UV-Vis, 1H-NMR, elemental analysis, and molar conductivity measurement. The data revealed that each amino acid binds to Pd(II) through the nitrogen of -NH2 and the oxygen of -COO- groups and acts as a bidentate chelate. These complexes have been assayed against leukemia cells (K562) using MTT method. The results indicated that both of the complexes display more cytotoxicity than the well-known anticancer drug, cisplatin. The interaction of the compounds with calf thymus DNA (CT-DNA) and human serum albumin (HSA) were assayed by a series of experimental techniques including electronic absorption, fluorescence, viscometry, gel electrophoresis, and FT-IR. The results indicated that the two complexes have interesting binding propensities toward CT-DNA as well as HSA and the binding affinity of (1) is more than (2). The fluorescence data indicated that both complexes strongly quench the fluorescence of ethidium bromide-DNA system as well as the intrinsic fluorescence of HSA via static quenching procedures. The thermodynamic parameters (ΔH°, ΔS°, and ΔG°) calculated from the fluorescence studies showed that hydrogen bonds and van der Waals interactions play a major role in the binding of the complexes to DNA and HSA. We suggest that both of the Pd(II) complexes exhibit the groove binding mode with CT-DNA and interact with the main binding pocket of HSA. Communicated by Ramaswamy H. Sarma.


Subject(s)
Antineoplastic Agents/pharmacology , Coordination Complexes/pharmacology , Leukemia/drug therapy , Thermodynamics , Alanine/chemistry , Alanine/pharmacology , Antineoplastic Agents/chemistry , Binding Sites/drug effects , Circular Dichroism , Cisplatin/chemistry , Cisplatin/pharmacology , Coordination Complexes/chemistry , DNA/chemistry , DNA/drug effects , Ethidium/analogs & derivatives , Ethidium/chemistry , Glycine/chemistry , Glycine/pharmacology , Humans , K562 Cells , Leukemia/pathology , Palladium/chemistry , Palladium/pharmacology , Protein Binding/drug effects , Solubility/drug effects , Spectroscopy, Fourier Transform Infrared , Valine/chemistry , Valine/pharmacology , Water/chemistry
2.
J Biomol Struct Dyn ; 37(17): 4419-4432, 2019 10.
Article in English | MEDLINE | ID: mdl-30526379

ABSTRACT

In this study, four Co(III)-, Cu(II)-, Zn(II)- and Pd(II)-based potent antibacterial complexes of formula K3[Co(ox)3]·3H2O (I), [Cu(phen)2Cl]Cl·6.5H2O (II), [Zn(phen)3]Cl2 (III) and [Pd(phen)2](NO3)2 (IV) (where ox is oxalato and phen is 1,10-phenanthroline) were synthesized. They were characterized by elemental analysis, molar conductivity measurements, UV-vis, Fourier transform infrared (FT-IR) and proton nuclear magnetic resonance (1H-NMR) techniques. These metal complexes were ordered in three combination series of I+II, I+II+III and I+II+III+IV. Antibacterial screening for each metal complex and their combinations against Gram-positive and Gram-negative bacteria revealed that all compounds were more potent antibacterial agents against the Gram-negative than those of the Gram-positive bacteria. The four metal complexes showed antibacterial activity in the order I > II > III > IV, and the activity of their combinations followed the order of I+II+III+IV > I+II+III > I+II. The DNA-binding properties of complex (I) and its three combinations were studied using electronic absorption and fluorescence (ethidium bromide displacement assay) spectroscopy. The results obtained indicated that all series interact effectively with calf thymus DNA (CT-DNA). The binding constant (Kb), the number of binding sites (n) and the Stern-Volmer constant (Ksv) were obtained based on the results of fluorescence measurements. The calculated thermodynamic parameters supported that hydrogen bonding and van der Waals forces play a major role in the association of each series of metal complexes with CT-DNA and follow the above-binding affinity order for the series. Communicated by Ramaswamy H. Sarma.


Subject(s)
Anti-Bacterial Agents/pharmacology , Coordination Complexes/pharmacology , DNA/metabolism , Binding Sites , Cobalt/pharmacology , Copper/pharmacology , Ethidium/metabolism , Kinetics , Microbial Sensitivity Tests , Palladium/pharmacology , Proton Magnetic Resonance Spectroscopy , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet , Thermodynamics , Zinc/pharmacology
3.
J Biomol Struct Dyn ; 36(5): 1329-1350, 2018 Apr.
Article in English | MEDLINE | ID: mdl-28436296

ABSTRACT

Two new Palladium(II) isomeric complexes, [Pd (Gly)(Leu)](I) and [Pd (Gly)(Ile)](II), where Gly is glycine, and Leu and Ile are isomeric amino acids (leucine and isoleucine), have been synthesized and characterized by elemental analysis, molar conductivity measurements, FT-IR, 1H NMR, and UV-Vis. The complexes have been tested for their In vitro cytotoxicity against cancer cell line K562 and their binding properties to calf thymus DNA (CT-DNA) and human serum albumin (HSA) have also been investigated by multispectroscopic techniques. Interactions of these complexes with CT-DNA were monitored using gel electrophoresis. The energy transfer from HSA to these complexes and the binding distance between HSA and the complexes (r) were calculated. The results obtained from these studies indicated that at very low concentrations, both complexes effectively interact with CT-DNA and HSA. Fluorescence studies revealed that the complexes strongly quench DNA bound ethidium bromide as well as the intrinsic fluorescence of HSA through the static quenching procedures. Binding constant (Kb), apparent biomolecular quenching constant (kq), and number of binding sites (n) for CT-DNA and HSA were calculated using Stern-Volmer equation. The calculated thermodynamic parameters indicated that the hydrogen binding and vander Waals forces might play a major role in the interaction of these complexes with HSA and DNA. Thus, we propose that the complexes exhibit the groove binding with CT-DNA and interact with the main binding pocket of HSA. The complexes follow the binding affinity order of I > II with DNA- and II > I with HSA-binding.


Subject(s)
Antineoplastic Agents/chemistry , DNA/chemistry , Palladium/chemistry , Serum Albumin, Human/chemistry , Spectrum Analysis , Amino Acids/chemistry , Antineoplastic Agents/pharmacology , Binding Sites , DNA/metabolism , Molecular Structure , Protein Binding , Protein Structure, Secondary , Serum Albumin, Human/metabolism , Thermodynamics
4.
J Biomol Struct Dyn ; 36(11): 2787-2806, 2018 Aug.
Article in English | MEDLINE | ID: mdl-28849726

ABSTRACT

In this work, a pair of new palladium(II) complexes, [Pd(Gly)(Phe)] and [Pd(Gly)(Tyr)], (where Gly is glycine, Phe is phenylalanine, and Tyr is tyrosine) were synthesized and characterized by UV-Vis, FT-IR, elemental analysis, 1H-NMR, and conductivity measurements. The detailed 1H NMR and infrared spectral studies of these Pd(II) complexes ascertain the mode of binding of amino acids to palladium through nitrogen of -NH2 and oxygen of -COO- groups as bidentate chelates. The Pd(II) complexes have been tested for in vitro cytotoxicity activities against cancer cell line of K562. Interactions of these Pd(II) complexes with CT-DNA and human serum albumin were identified through absorption/emission titrations and gel electrophoresis which indicated significant binding proficiency. The binding distance (r) between these synthesized complexes and HSA based on Forster's theory of non-radiation energy transfer were calculated. Alterations of HSA secondary structure induced by complexes were confirmed by FT-IR measurements. The results of emission quenching at three temperatures have revealed that the quenching mechanism of these Pd(II) complexes with CT-DNA and HSA were the static and dynamic quenching mechanism, respectively. Binding constants (Kb), binding site number (n), and the corresponding thermodynamic parameters were calculated and revealed that the hydrogen binding and hydrophobic forces played a major role when Pd(II) complexes interacted with DNA and HSA, respectively. We bid that [Pd(Gly)(Phe)] and [Pd(Gly)(Tyr)] complexes exhibit the groove binding with CT-DNA and interact with the main binding pocket of HSA. The complexes follow the binding affinity order of [Pd(Gly)(Tyr)] > [Pd(Gly)(Phe)] with CT-DNA- and HSA-binding.


Subject(s)
Coordination Complexes/chemistry , Ligands , Organometallic Compounds/chemistry , Palladium/chemistry , Cell Proliferation , Cell Survival/drug effects , Chemistry Techniques, Synthetic , Coordination Complexes/chemical synthesis , Coordination Complexes/pharmacology , DNA/chemistry , Humans , K562 Cells , Kinetics , Molecular Structure , Organometallic Compounds/chemical synthesis , Organometallic Compounds/pharmacology , Protein Binding , Protein Conformation , Serum Albumin, Human/chemistry , Spectrum Analysis , Structure-Activity Relationship , Thermodynamics
5.
J Biomol Struct Dyn ; 36(10): 2713-2737, 2018 Aug.
Article in English | MEDLINE | ID: mdl-28768466

ABSTRACT

Two Zn(II) complexes of formula [Zn(bpy)(Gly)]NO3 (I) and [Zn(phen)(Gly)]NO3 (II) (where bpy = 2,2'-bipyridine, phen = 1,10-phenanthroline and Gly = glycine) were synthesized and characterized by elemental analysis, molar conductance measurements, UV-vis, FT-IR, and 1H NMR spectra. The interaction ability of these complexes with calf thymus DNA was monitored using spectroscopic methods, including UV-vis absorption spectroscopy, ethidium bromide displacement, Fourier transform infrared, and electrophoretic mobility assay. Further, the human serum albumin interactions of complexes I and II were investigated using UV-vis absorption spectroscopy, fluorescence quenching, circular dichroism, and Fourier transform infrared. The results obtained from these analyses indicated that both complexes interact effectively with CT-DNA and HSA. The binding constant (Kb), the Stern-Volmer constant (Ksv), and the number of binding sites (n) at different temperatures were determined for CT-DNA and HSA. Also, the negative ΔH° and ΔS° values showed that both hydrogen bonds and van der Waals forces played major roles in the association of CT-DNA-Zn(II) and HSA-Zn(II) complex formation. The displacement experiments suggested that Zn(II)-complexes primarily bound to Sudlow's site II of HSA. The distance between the donor (HSA) and the acceptor (Zn(II) complexes) was estimated on the basis of the Forster resonance energy transfer (FRET) and the alteration of HSA secondary structure induced by the compounds were confirmed by FT-IR spectroscopy. The complexes follow the binding affinity order of I > II with DNA and II > I with HSA. Finally, Antibacterial activity of complexes I and II have been screened against gram positive and gram negative bacteria.


Subject(s)
Anti-Bacterial Agents/pharmacology , DNA/metabolism , Serum Albumin, Human/metabolism , Zinc/pharmacology , Animals , Anti-Bacterial Agents/chemistry , Bacteria/drug effects , Binding Sites , Binding, Competitive , Cattle , Circular Dichroism , DNA/chemistry , Electrons , Fluorescence Resonance Energy Transfer , Humans , Kinetics , Microbial Sensitivity Tests , Proton Magnetic Resonance Spectroscopy , Serum Albumin, Human/chemistry , Spectroscopy, Fourier Transform Infrared , Thermodynamics , Zinc/chemistry
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