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1.
J Med Genet ; 43(9): 755-62, 2006 Sep.
Article in English | MEDLINE | ID: mdl-16597677

ABSTRACT

BACKGROUND: Hereditary leiomyomatosis and renal cell cancer (HLRCC) is the autosomal dominant heritable syndrome with predisposition to development of renal cell carcinoma and smooth muscle tumours of the skin and uterus. OBJECTIVE: To measure the fumarate hydratase (FH) enzyme activity in lymphoblastoid cell lines and fibroblast cell lines of individuals with HLRCC and other familial renal cancer syndromes. METHODS: FH enzyme activity was determined in the whole cell, cytosolic, and mitochondrial fractions in 50 lymphoblastoid and 16 fibroblast cell lines including cell lines from individuals with HLRCC with 16 different mutations. RESULTS: Lymphoblastoid cell lines (n = 20) and fibroblast cell lines (n = 11) from individuals with HLRCC had lower FH enzyme activity than cells from normal controls (p<0.05). The enzyme activity in lymphoblastoid cell lines from three individuals with mutations in R190 was not significantly different from individuals with other missense mutations. The cytosolic and mitochondrial FH activity of cell lines from individuals with HLRCC was reduced compared with those from control cell lines (p<0.05). There was no significant difference in enzyme activity between control cell lines (n = 4) and cell lines from affected individuals with other hereditary renal cancer syndromes (n = 22). CONCLUSIONS: FH enzyme activity testing provides a useful diagnostic method for confirmation of clinical diagnosis and screening of at-risk family members.


Subject(s)
Carcinoma, Renal Cell/enzymology , Fibroblasts/enzymology , Fumarate Hydratase/metabolism , Leiomyomatosis/enzymology , Lymphocytes/enzymology , Neoplastic Syndromes, Hereditary/enzymology , Amino Acid Sequence , Case-Control Studies , Cells, Cultured , Fumarate Hydratase/chemistry , Humans , Models, Molecular , Molecular Sequence Data , Mutation/genetics , Pedigree , Phenotype , Sequence Homology, Amino Acid
2.
Oncogene ; 25(44): 5933-41, 2006 Sep 28.
Article in English | MEDLINE | ID: mdl-16636660

ABSTRACT

Birt-Hogg-Dubé syndrome (BHD) is a rare, inherited genodermatosis characterized by hair follicle hamartomas, kidney tumors and spontaneous pneumothorax. The BHD locus was mapped to chromosome 17p11.2 by linkage analysis, and germline mutations in a novel gene (BHD) were identified in a panel of BHD families. Using RNA interference to decrease expression of the Drosophila BHD homolog (DBHD), we have demonstrated that DBHD is required for male germline stem cell (GSC) maintenance in the fly testis. Reduction of DBHD gene activity suppresses the GSC overproliferation phenotype associated with overexpression of either unpaired (upd) or decapentaplegic (dpp). Further genetic interaction experiments suggest that DBHD regulates GSC maintenance downstream or in parallel of the JAK/STAT and Dpp signal-transduction pathways. These findings suggest that the BHD protein may regulate tumorigenesis through modulating stem cells in human.


Subject(s)
Drosophila Proteins/genetics , Drosophila Proteins/metabolism , Drosophila Proteins/physiology , Drosophila/genetics , Protein-Tyrosine Kinases/metabolism , Proto-Oncogene Proteins/genetics , STAT Transcription Factors/metabolism , Signal Transduction/genetics , Spermatozoa/cytology , Stem Cells/metabolism , Testis/metabolism , Transcription Factors/metabolism , Amino Acid Sequence , Animals , Cell Differentiation/genetics , Humans , Janus Kinases , Male , Molecular Sequence Data , Proteins/physiology , Proto-Oncogene Proteins/metabolism , Proto-Oncogene Proteins/physiology , RNA Interference , Spermatozoa/metabolism , Stem Cells/cytology , Testis/cytology , Tumor Suppressor Proteins/genetics , Tumor Suppressor Proteins/metabolism , Tumor Suppressor Proteins/physiology
3.
J Med Genet ; 43(1): 18-27, 2006 Jan.
Article in English | MEDLINE | ID: mdl-15937070

ABSTRACT

BACKGROUND: Hereditary leiomyomatosis and renal cell cancer (HLRCC; OMIM 605839) is the predisposition to develop smooth muscle tumours of the skin and uterus and/or renal cancer and is associated with mutations in the fumarate hydratase gene (FH). Here we characterise the clinical and genetic features of 21 new families and present the first report of two African-American families with HLRCC. METHODS: Using direct sequencing analysis we identified FH germline mutations in 100% (21/21) of new families with HLRCC. RESULTS: We identified 14 germline FH mutations (10 missense, one insertion, two nonsense, and one splice site) located along the entire length of the coding region. Nine of these were novel, with six missense (L89S, R117G, R190C, A342D, S376P, Q396P), one nonsense (S102X), one insertion (111insA), and one splice site (138+1G>C) mutation. Four unrelated families had the R58X mutation and five unrelated families the R190H mutation. Of families with HLRCC, 62% (13/21) had renal cancer and 76% (16/21) cutaneous leiomyomas. Of women FH mutation carriers from 16 families, 100% (22/22) had uterine fibroids. Our study shows that expression of cutaneous manifestations in HLRCC ranges from absent to mild to severe cutaneous leiomyomas. FH mutations were associated with a spectrum of renal tumours. No genotype-phenotype correlations were identified. CONCLUSIONS: In combination with our previous report, we identify 31 different germline FH mutations in 56 families with HLRCC (20 missense, eight frameshifts, two nonsense, and one splice site). Our FH mutation detection rate is 93% (52/56) in families suspected of HLRCC.


Subject(s)
Fumarate Hydratase/genetics , Kidney Neoplasms/enzymology , Kidney Neoplasms/genetics , Leiomyomatosis/enzymology , Leiomyomatosis/genetics , Mutation/genetics , Phenotype , Black or African American/genetics , DNA Mutational Analysis , Female , Genotype , Humans , Leiomyoma/enzymology , Pedigree
4.
Am J Hum Genet ; 69(4): 876-82, 2001 Oct.
Article in English | MEDLINE | ID: mdl-11533913

ABSTRACT

Birt-Hogg-Dubé syndrome (BHD), an inherited autosomal genodermatosis characterized by benign tumors of the hair follicle, has been associated with renal neoplasia, lung cysts, and spontaneous pneumothorax. To identify the BHD locus, we recruited families with cutaneous lesions and associated phenotypic features of the BHD syndrome. We performed a genomewide scan in one large kindred with BHD and, by linkage analysis, localized the gene locus to the pericentromeric region of chromosome 17p, with a LOD score of 4.98 at D17S740 (recombination fraction 0). Two-point linkage analysis of eight additional families with BHD produced a maximum LOD score of 16.06 at D17S2196. Haplotype analysis identified critical recombinants and defined the minimal region of nonrecombination as being within a <4-cM distance between D17S1857 and D17S805. One additional family, which had histologically proved fibrofolliculomas, did not show evidence of linkage to chromosome 17p, suggesting genetic heterogeneity for BHD. The BHD locus lies within chromosomal band 17p11.2, a genomic region that, because of the presence of low-copy-number repeat elements, is unstable and that is associated with a number of diseases. Identification of the gene for BHD may reveal a new genetic locus responsible for renal neoplasia and for lung and hair-follicle developmental defects.


Subject(s)
Abnormalities, Multiple/genetics , Chromosomes, Human, Pair 17/genetics , Kidney Neoplasms/genetics , Pneumothorax/genetics , Skin Diseases/genetics , Adult , Chromosome Mapping , Female , Gene Frequency/genetics , Haplotypes/genetics , Humans , Lod Score , Male , Microsatellite Repeats/genetics , Recombination, Genetic/genetics , Syndrome
5.
Mol Cell Biol ; 21(17): 5857-68, 2001 Sep.
Article in English | MEDLINE | ID: mdl-11486025

ABSTRACT

beta-Catenin is an oncogenic protein involved in regulation of cell-cell adhesion and gene expression. Accumulation of cellular beta-catenin occurs in many types of human cancers. Four mechanisms are known to cause increases in beta-catenin: mutations of beta-catenin, adenomatous polyposis coli, or axin genes and activation of Wnt signaling. We report a new cause of beta-catenin accumulation involving oncogenic mutants of RON and MET receptor tyrosine kinases (RTKs). Cells transfected with oncogenic RON or MET were characterized by beta-catenin tyrosine phosphorylation and accumulation; constitutive activation of a Tcf transcriptional factor; and increased levels of beta-catenin/Tcf target oncogene proteins c-myc and cyclin D1. Interference with the beta-catenin pathway reduced the transforming potential of mutated RON and MET. Activation of beta-catenin by oncogenic RON and MET constitutes a new pathway, which might lead to cell transformation by these and other mutant growth factor RTKs.


Subject(s)
Cytoskeletal Proteins/metabolism , Proto-Oncogene Proteins c-met/metabolism , Receptor Protein-Tyrosine Kinases/metabolism , Receptors, Cell Surface/metabolism , Repressor Proteins , Signal Transduction , Trans-Activators , 3T3 Cells , Animals , Axin Protein , Calcium-Calmodulin-Dependent Protein Kinases/metabolism , Cell Line , Cell Transformation, Neoplastic , Cyclin D1/biosynthesis , Dogs , Glycogen Synthase Kinase 3 , Mice , Mutagenesis, Site-Directed , Phosphorylation , Proteins/metabolism , Proto-Oncogene Proteins c-met/genetics , Proto-Oncogene Proteins c-myc/biosynthesis , Proto-Oncogene Proteins c-myc/genetics , Receptor Protein-Tyrosine Kinases/genetics , Receptors, Cell Surface/genetics , TCF Transcription Factors , Transcription Factor 7-Like 2 Protein , Transcription Factors/genetics , Transcriptional Activation , Tyrosine/metabolism , beta Catenin
6.
Proc Natl Acad Sci U S A ; 98(13): 7504-9, 2001 Jun 19.
Article in English | MEDLINE | ID: mdl-11390984

ABSTRACT

Clear cell-type renal cell carcinomas (clear RCC) are characterized almost universally by loss of heterozygosity on chromosome 3p, which usually involves any combination of three regions: 3p25-p26 (harboring the VHL gene), 3p12-p14.2 (containing the FHIT gene), and 3p21-p22, implying inactivation of the resident tumor-suppressor genes (TSGs). For the 3p21-p22 region, the affected TSGs remain, at present, unknown. Recently, the RAS association family 1 gene (isoform RASSF1A), located at 3p21.3, has been identified as a candidate lung and breast TSG. In this report, we demonstrate aberrant silencing by hypermethylation of RASSF1A in both VHL-caused clear RCC tumors and clear RCC without VHL inactivation. We found hypermethylation of RASSF1A's GC-rich putative promoter region in most of analyzed samples, including 39 of 43 primary tumors (91%). The promoter was methylated partially or completely in all 18 RCC cell lines analyzed. Methylation of the GC-rich putative RASSF1A promoter region and loss of transcription of the corresponding mRNA were related causally. RASSF1A expression was reactivated after treatment with 5-aza-2'-deoxycytidine. Forced expression of RASSF1A transcripts in KRC/Y, a renal carcinoma cell line containing a normal and expressed VHL gene, suppressed growth on plastic dishes and anchorage-independent colony formation in soft agar. Mutant RASSF1A had reduced growth suppression activity significantly. These data suggest that RASSF1A is the candidate renal TSG gene for the 3p21.3 region.


Subject(s)
Carcinoma, Renal Cell/genetics , Chromosomes, Human, Pair 3 , Genes, Tumor Suppressor , Kidney Neoplasms/genetics , Neoplasm Proteins/genetics , Neoplasm Proteins/metabolism , Tumor Suppressor Proteins , Azacitidine/pharmacology , Cell Adhesion , Cell Division/drug effects , Chromosome Mapping , DNA Methylation , DNA Primers , DNA, Neoplasm/chemistry , DNA, Neoplasm/metabolism , Doxycycline/toxicity , Gene Expression Regulation, Neoplastic/drug effects , Humans , Promoter Regions, Genetic , Recombinant Proteins/metabolism , Restriction Mapping , Reverse Transcriptase Polymerase Chain Reaction , Tumor Cells, Cultured
7.
Proteins ; 44(1): 32-43, 2001 Jul 01.
Article in English | MEDLINE | ID: mdl-11354004

ABSTRACT

Missense mutations in the tyrosine kinase domain of the MET proto-oncogene occur in selected cases of papillary renal carcinoma. In biochemical and biological assays, these mutations produced constitutive activation of the MET kinase and led to tumor formation in nude mice. Some mutations caused transformation of NIH 3T3 cells. To elucidate the mechanism of ligand-independent MET kinase activation by point mutations, we constructed several 3D models of the wild-type and mutated MET catalytic core domains. Analysis of these structures showed that some mutations (e.g., V1110I, Y1248H/D/C, M1268T) directly alter contacts between residues from the activation loop in its inhibitory conformation and those from the main body of the catalytic domain; others (e.g., M1149T, L1213V) increase flexibility at the critical points of the tertiary structure and facilitate subdomain movements. Mutation D1246N plays a role in stabilizing the active form of the enzyme. Mutation M1268T affects the S+1 and S+3 substrate-binding pockets. Models implicate that although these changes do not compromise the affinity toward the C-terminal autophosphorylation site of the MET protein, they allow for binding of the substrate for the c-Abl tyrosine kinase. We provide biochemical data supporting this observation. Mutation L1213V affects the conformation of Tyr1212 in the active form of MET. Several somatic mutations are clustered at the surface of the catalytic domain in close vicinity of the probable location of the MET C-terminal docking site for cytoplasmic effectors.


Subject(s)
Point Mutation/genetics , Protein-Tyrosine Kinases/metabolism , Proto-Oncogene Proteins , Proto-Oncogenes/genetics , Receptors, Growth Factor , Trans-Activators/genetics , Trans-Activators/metabolism , Catalytic Domain/genetics , Catalytic Domain/physiology , Enzyme Activation/genetics , Enzyme Activation/physiology , Ligands , Models, Molecular , Protein Structure, Tertiary/physiology , Proto-Oncogene Mas , Proto-Oncogene Proteins c-met , Sequence Alignment , Sequence Homology , Substrate Specificity/physiology
8.
Hum Mutat ; 17(3): 210-9, 2001 Mar.
Article in English | MEDLINE | ID: mdl-11241843

ABSTRACT

Sensitive and high throughput techniques are required for the detection of DNA sequence variants such as single nucleotide polymorphisms (SNPs) and mutations. One problem, common to all methods of SNP and mutation detection, is that experimental conditions required for detection of DNA sequence variants depend on the specific DNA sequence to be analyzed. Although algorithms and other calculations have been developed to predict the experimental conditions required to detect DNA sequence variation in a specific DNA sequence, these algorithms do not always provide reliable information and experimental conditions for SNP and mutation detection must be devised empirically. Determination of experimental conditions for detection of DNA sequence variation is difficult when samples containing only wild type sequence are available. When patient derived positive controls are used, increasingly there are valid concerns about commercial ownership and patient privacy. This report presents a rapid and efficient method, employing random mutagenesis-PCR (RM-PCR) using low fidelity DNA polymerase, to randomly introduce single and multiple base substitutions and deletions into DNA sequences of interest. Clones with sequence changes were used to validate denaturing HPLC (DHPLC) algorithm predictions, optimize conditions for mutation detection in exon 15 of the tyrosine kinase domain of the MET proto-oncogene, and to confirm the association between specific DNA sequence changes and unique DHPLC chromatographic profiles (signatures). Finally, DNA from 33 papillary renal carcinoma (PRC) patients was screened for mutations in exon 15 of MET using "validated" DHPLC conditions as a proof of principle application of RM-PCR. Use of RM-PCR for DHPLC and other SNP/mutation detection methods is discussed along with challenges associated with detecting sequence alterations in mixed tumor/normal tissue, pooled samples, and from regions of the genome that have been amplified during tumorigenesis or duplicated during evolution. Hum Mutat 17:210-219, 2001. Published 2001 Wiley-Liss, Inc.


Subject(s)
DNA Mutational Analysis/methods , Polymorphism, Single Nucleotide/genetics , Chromatography, High Pressure Liquid/methods , Cloning, Molecular , DNA/chemistry , DNA/genetics , Exons/genetics , Humans , Mutagenesis , Mutation , Polymerase Chain Reaction/methods , Proto-Oncogene Mas , Proto-Oncogene Proteins c-met/genetics , Sequence Analysis, DNA
9.
Surgery ; 128(6): 1022-7;discussion 1027-8, 2000 Dec.
Article in English | MEDLINE | ID: mdl-11114638

ABSTRACT

BACKGROUND: Patients with von Hippel-Lindau disease (VHL) may develop pancreatic neuroendocrine tumors (PNETs), which can behave in a malignant fashion. We prospectively evaluated size criteria for resection of lesions and the role of genotype/phenotype analysis of germline VHL mutations in predicting clinical course. METHODS: From December 1988 through December 1999 we screened 389 patients with VHL. The diagnosis of PNET was made by pathologic analysis of tissues or by radiographic appearance. Germline mutations were determined by quantitative Southern blotting, fluorescence in situ hybridization and complete gene sequencing. RESULTS: Forty-four patients with PNETs have been identified; 25 have undergone surgical resection, 5 had metastatic disease, and 14 are being monitored. No patient who has undergone resection based on tumor size criteria has developed metastases. Patients with PNETs were more likely to have missense mutations (58%), and 4 of 5 patients (80%) with metastatic disease had mutations in exon 3 compared with 18 of 39 (46%) patients without metastatic disease. CONCLUSIONS: Imaging for detection and surgical resection based on size criteria have resulted in the successful management of VHL patients with PNETs. Analysis of germline mutations may help identify patients at risk for PNET and which patients may benefit from surgical intervention.


Subject(s)
Ligases , Neuroendocrine Tumors/surgery , Pancreatic Neoplasms/surgery , Tumor Suppressor Proteins , Ubiquitin-Protein Ligases , von Hippel-Lindau Disease/surgery , Adolescent , Adult , Aged , Female , Humans , Male , Middle Aged , Neuroendocrine Tumors/complications , Neuroendocrine Tumors/genetics , Pancreatic Neoplasms/complications , Pancreatic Neoplasms/genetics , Prospective Studies , Proteins/genetics , Tomography, X-Ray Computed , Von Hippel-Lindau Tumor Suppressor Protein , von Hippel-Lindau Disease/complications , von Hippel-Lindau Disease/genetics
10.
Am J Pathol ; 157(5): 1615-21, 2000 Nov.
Article in English | MEDLINE | ID: mdl-11073821

ABSTRACT

Microcystic adenoma and cysts of the pancreas occur sporadically or as a part of von Hippel-Lindau (VHL) disease. The pathology of pancreatic cystic disease in VHL patients has not been well characterized. Furthermore, it is presently unknown whether the alteration of the VHL gene is responsible for the development of the entire spectrum of pancreatic serous cystic lesions. We performed a histopathological analysis of 21 cysts and 98 microcystic adenomas in nine VHL patients with a known germline mutation. In addition, PCR-amplified DNA from 27 pancreatic cystic lesions in three informative patients was studied for allelic deletions with polymorphic markers spanning the VHL gene locus. In all patients, pancreatic lesions were multiple: 21 benign serous cysts, 63 microscopic microcystic adenomas (size <0.4 cm), and 35 macroscopic microcystic adenomas (size >0.5 cm). The average number of lesions per patient was 2.1 benign cysts (range, 0-8), 7.7 (1-37) microscopic microcystic adenomas, and 3 (0-21) macroscopic microcystic adenomas. All lesions showed similar histology and contained prominent fibrous stroma, clear and/or amphophilic, glycogen-rich epithelial cells, endothelial and smooth muscle cells. VHL deletions were detected in all types of pancreatic cystic lesions. The presence of VHL gene allelic deletions in the spectrum of multifocal pancreatic cystic lesions provides direct molecular evidence of their neoplastic nature and integral association with VHL disease. The histopathological and molecular data establish a serous cyst-microcystic adenoma continuum in the development of pancreatic cystic neoplasia in VHL disease.


Subject(s)
Adenoma/pathology , Cysts/pathology , Pancreatic Diseases/pathology , Pancreatic Neoplasms/pathology , von Hippel-Lindau Disease/genetics , von Hippel-Lindau Disease/pathology , Adenoma/genetics , Adult , Aged , Cysts/genetics , DNA, Neoplasm/genetics , Female , Humans , Loss of Heterozygosity , Male , Middle Aged , Molecular Biology/methods , Pancreatic Diseases/genetics , Pancreatic Neoplasms/genetics
11.
Oncogene ; 19(43): 4947-53, 2000 Oct 12.
Article in English | MEDLINE | ID: mdl-11042681

ABSTRACT

Activating mutations in the Met receptor tyrosine kinase, both germline and somatic, have been identified in human papillary renal cancer. Here we report a novel germline missense Met mutation, P1009S, in a patient with primary gastric cancer. The dosage of the mutant Met DNA was elevated in the tumor when compared to its matched normal DNA. Therefore, as with hereditary renal papillary cancer, the mutant Met allele may also be selectively duplicated in the tumor. Different from previously reported Met mutations, which occur in the tyrosine kinase domain, this missense mutation is located at the juxtamembrane domain, and is not constitutively activated. However, following treatment with HGF/SF, the P1009S mutant Met protein, expressed in NIH3T3 cells, displays increased and persistent tyrosine phosphorylation compared to the wild-type Met. Importantly, these cells also form colonies in soft agar, and are highly tumorigenic in athymic nude mice. A second nucleotide change in this region of Met, T1010I, was found in a breast cancer biopsy and a large cell lung cancer cell line. Although this previously reported 'polymorphism' did not stimulate NIH3T3 cell growth in soft agar, it was more active than the wild-type Met in the athymic nude mice tumorigenesis assay, suggesting that it may have effects on tumorigenesis. Met has been shown to be highly expressed in human gastric carcinoma cell lines, and our results raise the possibility that activating missense Met mutations could contribute to tumorigenesis of gastric cancer.


Subject(s)
Adenocarcinoma/genetics , Proto-Oncogene Proteins c-met/genetics , Stomach Neoplasms/genetics , 3T3 Cells/metabolism , Amino Acid Sequence , Animals , Cell Membrane/metabolism , DNA, Neoplasm/genetics , Exons , Female , Gene Amplification , Gene Expression Regulation, Neoplastic/genetics , Germ-Line Mutation , Hepatocyte Growth Factor/pharmacology , Humans , Mice , Mice, Nude , Molecular Sequence Data , Mutation, Missense , Phosphorylation/drug effects , Protein Structure, Tertiary , Proto-Oncogene Proteins c-met/metabolism , Tyrosine/metabolism
12.
Semin Cancer Biol ; 10(4): 313-8, 2000 Aug.
Article in English | MEDLINE | ID: mdl-10966853

ABSTRACT

This review summarizes information on inherited epithelial tumors of the kidney. Emphasis is placed on identifying clinically distinct inherited forms of renal cancer because each distinct clinical syndrome defines a different renal cancer susceptibility gene. So far, two genes that predispose to epithelial cancers of the kidney have been identified, VHL and the MET proto-oncogene. Available evidence suggests that several renal cancer genes remain to be identified.


Subject(s)
Kidney Neoplasms/genetics , Chromosomes, Human, Pair 3/genetics , Disease Susceptibility , Humans , Kidney Neoplasms/metabolism , Proto-Oncogene Mas , Translocation, Genetic , von Hippel-Lindau Disease/classification , von Hippel-Lindau Disease/genetics , von Hippel-Lindau Disease/metabolism
13.
Hum Mutat ; 16(1): 68-76, 2000.
Article in English | MEDLINE | ID: mdl-10874308

ABSTRACT

Research tools which improve mutation detection, SNP discovery, and allele characterization will facilitate studies of cancer, inherited disease, and genomic evolution. Denaturing High-Performance Liquid Chromatography (DHPLC) is a recently developed methodology for detection of heteroduplexes formed in DNA samples containing mismatches between wild type and mutant strands. In an effort to develop a rapid, sensitive mutation detection method for studies of families with inherited kidney cancer, we evaluated DHPLC for detection and analysis of MET proto-oncogene mutations in papillary renal carcinomas (PRC). We found DHPLC to be 100% accurate in detecting 15 known disease-associated MET mutations. Significantly, each MET mutation and two novel SNPs generated a characteristic chromatographic profile or signature with reproducible distinguishing features. Standardization of DHPLC reagents and improved methods design were critical to the reliability and accuracy of mutation prediction. Improvements included addition of a 75% acetonitrile wash followed by a rejuvenating gradient, and detailed analysis of signature shape, retention time (RT), RT differences (DeltaRT), and temperature-dependent (melt) profiling. We used signatures to predict mutations in new PRC samples, mutation carriers in asymptomatic hereditary PRC family members, and in a blind study of previously characterized DNAs. Application to SNP discovery is discussed. Wiley-Liss, Inc.


Subject(s)
Chromatography, High Pressure Liquid/methods , DNA Mutational Analysis , Mutation , Proto-Oncogene Proteins c-met/genetics , Carcinoma, Renal Cell/genetics , Carcinoma, Renal Cell/pathology , DNA Fingerprinting , DNA Mutational Analysis/methods , Electrophoresis, Agar Gel , Female , Heteroduplex Analysis , Heterozygote , Humans , Male , Pedigree , Polymorphism, Single Nucleotide/genetics , Polymorphism, Single-Stranded Conformational , Proto-Oncogene Mas
14.
Oncogene ; 19(26): 2996-3002, 2000 Jun 15.
Article in English | MEDLINE | ID: mdl-10871851

ABSTRACT

We recently described germline and somatic mutations in the MET gene associated with papillary renal carcinoma type 1. MET mutation M1268T was located in a codon highly conserved among receptor tyrosine kinases, and homologous to the codon mutated in multiple endocrine neoplasia type 2B, and many cases of sporadic medullary carcinoma of the thyroid gland (Ret M918T). Ret M918T and MET M1268T have previously been shown to be highly active in mouse NIH3T3 transformation assays, and to change the substrate specificity of the kinase. We studied the mechanism of transformation mediated by MET M1268T by analysing a clone, F4, derived from NIH3T3 cells transformed by MET M1268T. In contrast to NIH3T3 cells, F4 cells grew in suspension in tissue culture, and rapidly formed tumors in nude mice. We found that c-Src was constitutively bound to MET proteins in F4 cells, and that Src kinase activity was elevated. Transfection of dominant negative Src constructs into F4 cells eliminated the ability of F4 cells to grow in suspension culture and retarded the growth of F4 cells in vivo. The ability of transfected dominant negative Src constructs to inhibit the growth of F4 cells correlated with the inhibition of phosphorylation of paxillin and focal adhesion kinase. Transfection of dominant negative Src constructs into F4 cells had no effect on Grb2 binding or PLC gamma phosphorylation. The results suggest that c-Src participates in the tumorigenic phenotype induced in NIH3T3 cells by MET M1268T by signaling through focal adhesion kinase and paxillin. Oncogene (2000).


Subject(s)
Cell Transformation, Neoplastic/genetics , Genes, Dominant , Oncogene Protein pp60(v-src)/genetics , Proto-Oncogene Proteins c-met/genetics , 3T3 Cells , Animals , Blood , Cell Division/genetics , Cytoskeletal Proteins/metabolism , Focal Adhesion Kinase 1 , Focal Adhesion Protein-Tyrosine Kinases , Isoenzymes/metabolism , Mice , Mitogen-Activated Protein Kinases/metabolism , Paxillin , Phospholipase C gamma , Phosphoproteins/metabolism , Phosphorylation , Protein-Tyrosine Kinases/metabolism , Transfection , Type C Phospholipases/metabolism
15.
Med Care ; 38(3): 250-60, 2000 Mar.
Article in English | MEDLINE | ID: mdl-10718350

ABSTRACT

BACKGROUND: Previous studies relating the incidence of negligent medical care to malpractice lawsuits in the United States may not be generalizable. These studies are based on data from 2 of the most populous states (California and New York), collected more than a decade ago, during volatile periods in the history of malpractice litigation. OBJECTIVES: The study objectives were (1) to calculate how frequently negligent and nonnegligent management of patients in Utah and Colorado in 1992 led to malpractice claims and (2) to understand the characteristics of victims of negligent care who do not or cannot obtain compensation for their injuries from the medical malpractice system. DESIGN: We linked medical malpractice claims data from Utah and Colorado with clinical data from a review of 14,700 medical records. We then analyzed characteristics of claimants and nonclaimants using evidence from their medical records about whether they had experienced a negligent adverse event. MEASURES: The study measures were negligent adverse events and medical malpractice claims. RESULTS: Eighteen patients from our study sample filed claims: 14 were made in the absence of discernible negligence and 10 were made in the absence of any adverse event. Of the patients who suffered negligent injury in our study sample, 97% did not sue. Compared with patients who did sue for negligence occurring in 1992, these nonclaimants were more likely to be Medicare recipients (odds ratio [OR], 3.5; 95% CI [CI], 1.3 to 9.6), Medicaid recipients (OR, 3.6; 95% CI, 1.4 to 9.0), > or =75 years of age (OR, 7.0; 95% CI, 1.7 to 29.6), and low income earners (OR, 1.9; 95% CI, 0.9 to 4.2) and to have suffered minor disability as a result of their injury (OR, 6.3; 95% CI, 2.7 to 14.9). CONCLUSIONS: The poor correlation between medical negligence and malpractice claims that was present in New York in 1984 is also present in Utah and Colorado in 1992. Paradoxically, the incidence of negligent adverse events exceeds the incidence of malpractice claims but when a physician is sued, there is a high probability that it will be for rendering nonnegligent care. The elderly and the poor are particularly likely to be among those who suffer negligence and do not sue, perhaps because their socioeconomic status inhibits opportunities to secure legal representation.


Subject(s)
Attitude to Health , Malpractice/statistics & numerical data , Medical Errors/psychology , Medical Errors/statistics & numerical data , Adolescent , Adult , Aged , California , Colorado , Disabled Persons/statistics & numerical data , Female , Humans , Male , Malpractice/legislation & jurisprudence , Medicaid/statistics & numerical data , Medical Errors/legislation & jurisprudence , Medicare/statistics & numerical data , Middle Aged , Multivariate Analysis , New York , Poverty/statistics & numerical data , United States , Utah
16.
J Urol ; 163(2): 431-3, 2000 Feb.
Article in English | MEDLINE | ID: mdl-10647647

ABSTRACT

PURPOSE: We describe the earliest renal lesions associated with hereditary papillary renal cancer and estimate the prevalence of microscopic papillary renal tumors. MATERIALS AND METHODS: Grossly normal tissue was obtained from 12 kidneys during renal surgery in 9 patients with hereditary papillary renal cancer. Tissue was examined microscopically and findings were compared to those previously reported to be associated with von Hippel-Lindau disease and sporadic renal cell carcinoma. RESULTS: A total of 92 microscopic papillary renal cell carcinoma lesions were identified on 46 of 88 slides (53%). No other lesions were identified. All tumors were solid and displayed the basophilic papillary histology characteristic of hereditary papillary renal cancer. Extrapolation of the data predicted the prevalence of 1,100 to 3,400 microscopic papillary tumors in a single kidney in a patient with hereditary papillary renal cancer. CONCLUSIONS: The basophilic papillary histology characteristic of clinically apparent renal tumors in patients with hereditary papillary renal cancer also characterizes the multiple microscopic lesions seen in the kidneys. These findings suggest that the earliest renal tumor in patients with an activating hereditary mutation of the met gene is papillary basophilic renal cancer. The large number of microscopic tumors in patients with hereditary papillary renal cancer was comparable to or greater than that seen in those with von Hippel-Lindau disease.


Subject(s)
Carcinoma, Papillary/epidemiology , Carcinoma, Papillary/pathology , Kidney Neoplasms/epidemiology , Kidney Neoplasms/pathology , Adult , Aged , Carcinoma, Papillary/genetics , Female , Humans , Kidney Neoplasms/genetics , Male , Middle Aged , Prevalence
17.
Am J Hum Genet ; 66(1): 84-91, 2000 Jan.
Article in English | MEDLINE | ID: mdl-10631138

ABSTRACT

von Hippel-Lindau disease (VHL [MIM 193300]) is a heritable autosomal dominant multiple-neoplastic disorder with high penetrance. It is characterized by brain and spinal-cord hemangioblastomas, retinal angiomas, clear-cell renal carcinoma, neuroendocrine tumors and cysts of the pancreas, pheochromocytomas, endolymphatic-sac tumors, and papillary cystadenomas of the epididymis and broad ligament. Although most index cases have a positive family history of VHL, some do not and may represent de novo cases. Cases without a family history of VHL may or may not have a germline mutation in their VHL tumor-suppressor gene. We present two cases of VHL mosaicism. In each of two families, standard testing methods (Southern blot analysis and direct sequencing) identified the germline mutation in the VHL gene of the offspring, but not in their clinically affected parent. Additional methods of analysis of the affected parents' blood detected the VHL-gene mutation in a portion of their peripheral blood lymphocytes. In one case, detection of the deleted allele was by FISH, and, in the second case, the 3-bp deletion was detected by conformational sensitive gel electrophoresis and DNA sequencing of cloned genomic DNA. Mosaicism in VHL is important to search for and recognize when an individual without a family history of VHL has VHL. Patients diagnosed without family histories of the disease have been reported in as many as 23% of kindreds with VHL. Identification of individuals potentially mosaic for VHL will affect counseling of families, and these individuals should themselves be included in clinical screening programs for occult disease.


Subject(s)
Mosaicism/genetics , von Hippel-Lindau Disease/genetics , Adult , Blotting, Southern , DNA Mutational Analysis , Female , Humans , In Situ Hybridization, Fluorescence , Male , Middle Aged , Pedigree , Polymerase Chain Reaction , Radiography , von Hippel-Lindau Disease/diagnostic imaging
18.
Biochem Biophys Res Commun ; 266(1): 43-50, 1999 Dec 09.
Article in English | MEDLINE | ID: mdl-10581162

ABSTRACT

VHL is the causative gene for both von Hippel-Lindau (VHL) disease and sporadic clear-cell renal cancer. We showed earlier that VHL downregulates vascular endothelial growth factor transcription by directly binding and inhibiting the transcriptional activator Sp1. We have now mapped the VHL Sp1-binding domain to amino acids 96-122. The 96-122 domain is disproportionately affected by substitution mutations, which interfere with the VHL-Sp1 interaction. Deletion of the 96-122 domain prevents VHL effects on Sp1 DNA binding and on VHL target gene expression, indicating the domain contributes importantly to VHL tumor suppressor activity. Nevertheless, prevention of the VHL-Sp1 interaction only partially abrogates VHL's transcriptional repressor activity, supporting the existence of VHL transcriptional effectors in addition to Sp1. VHL also directly interacts with the Sp1 zinc fingers and self-associates via the 96-122 domain, which furthermore suggest the domain may bind other metalloproteins and contribute to VHL dominant-negative effects.


Subject(s)
Genes, Tumor Suppressor/physiology , Ligases , Proteins/chemistry , Proteins/metabolism , Sp1 Transcription Factor/metabolism , Tumor Suppressor Proteins , Ubiquitin-Protein Ligases , Amino Acid Substitution/genetics , Binding Sites , Cell Line , Dimerization , Down-Regulation , Endothelial Growth Factors/genetics , Genes, Tumor Suppressor/genetics , Humans , Kidney Neoplasms/genetics , Kidney Neoplasms/metabolism , Kidney Neoplasms/pathology , Lymphokines/genetics , Promoter Regions, Genetic/genetics , Protein Binding , Proteins/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Repressor Proteins/chemistry , Repressor Proteins/genetics , Repressor Proteins/metabolism , Response Elements/genetics , Sequence Deletion/genetics , Sp1 Transcription Factor/antagonists & inhibitors , Sp1 Transcription Factor/genetics , Tumor Cells, Cultured , Vascular Endothelial Growth Factor A , Vascular Endothelial Growth Factors , Von Hippel-Lindau Tumor Suppressor Protein , Zinc Fingers
19.
Cancer Res ; 59(21): 5560-4, 1999 Nov 01.
Article in English | MEDLINE | ID: mdl-10554035

ABSTRACT

von Hippel-Lindau (VHL) disease is an autosomal dominantly inherited cancer syndrome predisposing to a variety of tumor types that include retinal hemangioblastomas, hemangioblastomas of the central nervous system, renal cell carcinomas, pancreatic cysts and tumors, pheochromocytomas, endolymphatic sac tumors, and epididymal cystadenomas [W. M. Linehan et al., J. Am. Med. Assoc., 273: 564-570, 1995; E. A. Maher and W. G. Kaelin, Jr., Medicine (Baltimore), 76: 381-391, 1997; W. M. Linehan and R. D. Klausner, In: B. Vogelstein and K. Kinzler (eds.), The Genetic Basis of Human Cancer, pp. 455-473, McGraw-Hill, 1998]. The VHL gene was localized to chromosome 3p25-26 and cloned [F. Latif et al., Science (Washington DC), 260: 1317-1320, 1993]. Germline mutations in the VHL gene have been detected in the majority of VHL kindreds. The reported frequency of detection of VHL germline mutations has varied from 39 to 80% (J. M. Whaley et al., Am. J. Hum. Genet., 55: 1092-1102, 1994; Clinical Research Group for Japan, Hum. Mol. Genet., 4: 2233-2237, 1995; F. Chen et al., Hum. Mutat., 5: 66-75, 1995; E. R. Maher et al., J. Med. Genet., 33: 328-332, 1996; B. Zbar, Cancer Surv., 25: 219-232, 1995). Recently a quantitative Southern blotting procedure was found to improve this frequency (C. Stolle et al., Hum. Mutat., 12: 417-423, 1998). In the present study, we report the use of fluorescence in situ hybridization (FISH) as a method to detect and characterize VHL germline deletions. We reexamined a group of VHL patients shown previously by single-strand conformation and sequencing analysis not to harbor point mutations in the VHL locus. We found constitutional deletions in 29 of 30 VHL patients in this group using cosmid and P1 probes that cover the VHL locus. We then tested six phenotypically normal offspring from four of these VHL families: two were found to carry the deletion and the other four were deletion-free. In addition, germline mosaicism of the VHL gene was identified in one family. In sum, FISH was found to be a simple and reliable method to detect VHL germline deletions and practically useful in cases where other methods of screening have failed to detect a VHL gene abnormality.


Subject(s)
Gene Deletion , In Situ Hybridization, Fluorescence/methods , von Hippel-Lindau Disease/genetics , Chromosomes, Human, Pair 3 , Family Health , Female , Genetic Testing/methods , Humans , Models, Genetic , Point Mutation
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