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1.
Biokhimiia ; 61(8): 1471-82, 1996 Aug.
Article in Russian | MEDLINE | ID: mdl-8962921

ABSTRACT

Site-specific endonuclease R. AspMI was isolated and purified to apparent functional homogeneity from Acinetobacter species (strain M). The enzyme recognizes symmetrical DNA sequence 5'-AGG decreases CCT-3' and cleaves it at the site indicated by the arrow forming blind DNA ends. The endonuclease is an isoschizomer of the StuI endonuclease. Cleavage of the DNA site was inhibited by dcm-methylation. AspMI is approximately equal to 30 kD monomer.


Subject(s)
Acinetobacter/enzymology , Deoxyribonucleases, Type II Site-Specific/isolation & purification , Chromatography, Gel , DNA Methylation , Deoxyribonucleases, Type II Site-Specific/genetics , Enzyme Stability , Molecular Weight , Plasmids , Restriction Mapping , Substrate Specificity
2.
Biokhimiia ; 61(6): 1006-14, 1996 Jun.
Article in Russian | MEDLINE | ID: mdl-9011238

ABSTRACT

The site-specific DNA-methylase M.BspST5I has been isolated from Bacillus species ST5 and purified to functional purity. M.BspST5I protects DNA from endonuclease R.BspST5I which recognizes the nonpalindromic sequence [formula: see text] on DNA. MpBspST5I belongs to adenine-specific methylases.


Subject(s)
Bacillus/enzymology , Site-Specific DNA-Methyltransferase (Adenine-Specific)/metabolism , Chromatography, Gel , DNA Methylation , Site-Specific DNA-Methyltransferase (Adenine-Specific)/isolation & purification , Substrate Specificity
3.
Biokhimiia ; 60(12): 1999-2010, 1995 Dec.
Article in Russian | MEDLINE | ID: mdl-8600994

ABSTRACT

A site-specific endonuclease R.BspST5I has been isolated in a functionally pure state from the thermophilic strain of Bacillus species ST5. The enzyme recognizes sequence 5'-GCATC-3' on the DNA and splits it at a distance of five nucleotides from the 3'-end of the recognition site as well as at distances of nine or ten nucleotides at the complementary filament depending on the hydrolyzed sequence of the DNA. The enzyme is a isomer of endonuclease SfaNI from Streptococcus faecalis ND547.


Subject(s)
Bacillus/enzymology , DNA Restriction Enzymes/isolation & purification , Base Sequence , Chromatography, Gel , DNA/metabolism , DNA Restriction Enzymes/metabolism , Electrophoresis, Agar Gel , Molecular Sequence Data
4.
Biokhimiia ; 60(9): 1435-49, 1995 Sep.
Article in Russian | MEDLINE | ID: mdl-8562652

ABSTRACT

The site-specific endonuclease R . BspIS4I and methylase M . BspIS4I have been isolated and purified to functional purity from the thermophilic strain of Bacillus species IS4. R . BspIS4I recognizes sequence [sequence: see text] on the DNA and cleaves it as indicated by the arrows to form single-stranded 4-nucleotide 5'-protruding termini. The enzyme is an isoschizomer of BbvII. M . BspIS4I is related to adenine-specific methylase.


Subject(s)
Bacillus/enzymology , Site-Specific DNA-Methyltransferase (Adenine-Specific)/isolation & purification , Base Sequence , Chromatography, Ion Exchange , DNA, Bacterial/metabolism , Electrophoresis, Agar Gel , Molecular Sequence Data , Site-Specific DNA-Methyltransferase (Adenine-Specific)/metabolism
5.
Mikrobiologiia ; 63(2): 235-8, 1994.
Article in Russian | MEDLINE | ID: mdl-8022326

ABSTRACT

The strain, producing new site-specific endonuclease BcoKI has been found at the screening of the thermophilic bacteria isolated from tobacco. A phenotype characteristic of the strain is given. It has been identified as a new strain Bacillus coagulans. BcoKI, a class-IIS restriction endonuclease has been obtained by three consecutive chromatographies on blue agarose hydroxyapatite and heparin-Sepharose. BcoKI, an isoschizomer of Ksp6321, recognizes the six base non-palindromic sequence 5'CTCTTC3' and cleaves one nucleotide 3' of the 3' cytosine on this strand and four nucleotide 5' of the 5' guanine on the opposite strand to generate a three base 5' overhang.


Subject(s)
Bacillus/enzymology , Deoxyribonucleases, Type II Site-Specific/biosynthesis , Autoradiography , Base Sequence , Chromatography, Ion Exchange , Deoxyribonucleases, Type II Site-Specific/isolation & purification , Electrophoresis, Agar Gel , Electrophoresis, Polyacrylamide Gel , Molecular Sequence Data , Substrate Specificity
6.
Bioorg Khim ; 19(11): 1073-6, 1993 Nov.
Article in Russian | MEDLINE | ID: mdl-8285920

ABSTRACT

New site-specific endonucleases BspBS31I, BstBS32I, BspIS41, BstTS5I, BspTS514I were isolated from five thermophilic soil bacteria Bacillus sp. BS31, B. stearothermophilus BS32, Bacillus sp. IS4, B. stearothermophilus TS5, Bacillus sp. TS514. The enzymes are isoschizomers of the restriction endonuclease BbvII. Endonuclease BspTS514I was obtained pure from interfering contaminations by two consecutive chromatographies on blue agarose and hydroxyapatite. The enzyme exhibits a maximal activity at 55 degrees C in 10 mM tris-HCl (pH 9.2), 10 mM MgCl2 and 50 mM NaCl.


Subject(s)
Bacillus/enzymology , DNA Restriction Enzymes/isolation & purification , Base Sequence , Chromatography, Liquid , DNA Restriction Enzymes/metabolism , Electrophoresis, Polyacrylamide Gel , Molecular Sequence Data , Substrate Specificity
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