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1.
Epidemiol Mikrobiol Imunol ; 70(1): 10-17, 2021.
Article in English | MEDLINE | ID: mdl-33853333

ABSTRACT

OBJECTIVE: The aim of this study was to analyse epidemiological and clinical characteristics of invasive pneumococcal disease (IPD) in adults before and after the introduction of the general childhood conjugate pneumococcal vaccination programme in the Czech Republic. MATERIAL AND METHODS: The retrospective observational sentinel study included adults with IPD admitted to the Na Bulovce Hospital in Prague from 1/2000 through 12/2019. A case of IPD was defined as isolation of Streptococcus pneumoniae from a primarily sterile site. RESULTS: A total of 304 IPD cases were diagnosed during the study period, with a male to female ratio of 1.49:1 and age median of 58 years (IQR 43-73). The most prevalent clinical forms were bacteraemic pneumonia (185 cases; 60.9%) and purulent meningitis (90; 29.6%). A total of 157/293 patients (53.6%) required intensive care, and the case fatality rate was 25.3% (n = 77). The serotype was determined in 292 (96.0%) isolates, the most prevalent being serotypes 3 (38; 12.5%), 4 (28; 9.2%), 7F (24; 7.9%), 8 (21; 6.9%), and 1 (18; 5.9%). Both clinical and epidemiological characteristics of IPD caused by the most prevalent serotypes differed considerably. Patients diagnosed with serotype 3 were older, more frequently required intensive care, and showed higher mortality. The proportion of IPD caused by non-PCV13 serotypes increased from 28.8% (19/66) in 2000-2005 to 54.8% (40/70) in 2015-2019 (p = 0.001). CONCLUSION: The study demonstrated that invasive diseases caused by the most prevalent pneumococcal serotypes differ in their epidemiological and clinical characteristics and case fatality rate. During the study period, there was a significant increase in IPD caused by non-PCV 13 serotypes, limiting the effect of vaccination in adults.


Subject(s)
Pneumococcal Infections , Streptococcus pneumoniae , Adult , Aged , Child , Czech Republic/epidemiology , Female , Hospitals , Humans , Infant , Male , Middle Aged , Pneumococcal Infections/epidemiology , Pneumococcal Infections/prevention & control , Pneumococcal Vaccines , Retrospective Studies , Serogroup , Vaccination
2.
Epidemiol Mikrobiol Imunol ; 70(4): 285-290, 2021.
Article in English | MEDLINE | ID: mdl-35073707

ABSTRACT

A case report is presented of a patient with suspected septicaemia from whose blood culture a new strain of Corynebacterium sp. was isolated. Until now, no report of this strain isolated from human clinical materials has been available in the literature. In addition to a brief clinical description of the case, the article also features morphological, biochemical properties as well as antibiogram of the bacterium. It describes also methods used for the identification of this isolate. The aim of the work was to highlight a novel and rare coryneform strain.


Subject(s)
Blood Culture , Corynebacterium Infections , Corynebacterium/genetics , Corynebacterium Infections/diagnosis , DNA, Bacterial , Humans , Phylogeny , RNA, Ribosomal, 16S
3.
Epidemiol Mikrobiol Imunol ; 69(1): 48-52, 2020.
Article in English | MEDLINE | ID: mdl-32326716

ABSTRACT

Staphylococcus argenteus (S. argenteus) is a novel species of coagulase-positive staphylococci described in 2015. This species is phenotypically highly similar and genetically closely related to Staphylococcus aureus (S. aureus). Until recently, differentiation was only possible by molecular genetic methods, multilocus sequence typing and whole-genome sequencing, which are not generally used in routine laboratories due to time-consumingness and expensiveness. A major improvement in the identification of S. argenteus is the application of MALDI-TOF MS, if the available updated mass spectrum reference database is used. In the short report, we would like to present the first confirmed S. argenteus strain isolated from a patient in the Czech Republic and probably the first published S. argenteus strain in Central and Eastern Europe.


Subject(s)
Staphylococcal Infections , Staphylococcus , Czech Republic , Humans , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Staphylococcal Infections/microbiology , Staphylococcus/chemistry , Staphylococcus/classification , Staphylococcus/isolation & purification
4.
Epidemiol Mikrobiol Imunol ; 68(2): 75-81, 2019.
Article in English | MEDLINE | ID: mdl-31398980

ABSTRACT

AIM: The purpose of the surveillance performed from October to December in 2010-2017 was to monitor the trends in the susceptibility to beta-lactam and macrolide antibiotics in Streptococcus pneumoniae isolates from respiratory tract infections in the Czech Republic. MATERIAL AND METHODS: Between 42 and 55 laboratories participated in the study every year. Consecutive non-duplicate pneumococcal isolates from relevant microbiological specimens from patients with community-acquired bacterial respiratory tract infection were sequentially included in the study. Laboratories recorded qualitative results of penicillin and erythromycin susceptibility testing; susceptibility to antibiotics was determined by the disk diffusion method. Penicillin non-susceptible and/or erythromycin resistant isolates were referred to the National Reference Laboratory for Antibiotics, where the minimum inhibitory concentration of each antibiotic was tested using the broth microdilution method, and their serotyping was performed in the National Reference Laboratory for Streptococcal Infections. Twenty-six isolates from 2017 were analysed by the multilocus sequence typing method. RESULTS: In total, 7 491 pneumococcal strains were examined, of which 53.7% (4 023) were from the upper respiratory tract and 47.7% (3 573) from children under 15 years of age. Non-susceptibility to penicillin decreased from 2.6% in 2010 to 1.2% in 2017, while resistance to erythromycin increased from 7.4% to 9.7% over the same period. Penicillin non-susceptible isolates were mostly of serotypes 19A, 19F, and 15A. Macrolide resistant but penicillin susceptible isolates were predominantly represented by serotypes 19A and 3. The presence of the Taiwan19F-14 clone was confirmed in penicillin non-susceptible isolates by MLST, and the most frequently identified sequence type (ST) in macrolide resistant isolates was ST416 classified into the Netherlands15B-37 clone. CONCLUSIONS: The respiratory study of antibiotic resistance in S. pneumoniae confirmed the decreasing trend of resistance to penicillin but revealed a growing resistance to macrolide antibiotics in the Czech Republic. The results of our study confirm that antibiotic resistance in the vaccination era is associated primarily with the non-vaccine serotypes, and the clonal expansion of macrolide resistant serotype 19A was apparently supported by the growing prescription of macrolide antibiotics.


Subject(s)
Anti-Bacterial Agents , Drug Resistance, Bacterial , Pneumococcal Infections , Streptococcus pneumoniae , Adolescent , Anti-Bacterial Agents/pharmacology , Child , Czech Republic/epidemiology , Drug Resistance, Multiple, Bacterial , Humans , Microbial Sensitivity Tests , Multilocus Sequence Typing , Pneumococcal Infections/epidemiology , Pneumococcal Infections/microbiology , Serotyping , Streptococcus pneumoniae/drug effects
5.
Epidemiol Mikrobiol Imunol ; 68(2): 104-108, 2019.
Article in English | MEDLINE | ID: mdl-31398984

ABSTRACT

The Bartonella genus comprises more than 20 species of Gram-negative rods which are difficult to culture. These are facultative intracellular bacteria. Humans are reservoir hosts for B. quintana and B. bacilliformis or accidental hosts for other species. Bartonella is a cause of zoonosis. Bartonella infection can be completely asymptomatic or can be linked to various conditions. Our experience with Bartonella endocarditis from 2012-2017 is presented. The most effective diagnostic method for Bartonella endocarditis is PCR detection of DNA of the pathogen from excised valve tissue. The European Society of Cardiology (ESC) in the guidelines from 2015 recommends the combination doxycycline gentamycin for the treatment of Bartonella endocarditis.


Subject(s)
Bartonella Infections , Endocarditis , Animals , Bartonella , Bartonella Infections/diagnosis , Bartonella Infections/drug therapy , Endocarditis/diagnosis , Endocarditis/drug therapy , Gentamicins/therapeutic use , Humans , Zoonoses/diagnosis , Zoonoses/drug therapy
6.
J Antimicrob Chemother ; 73(suppl_5): v22-v27, 2018 04 01.
Article in English | MEDLINE | ID: mdl-29659883

ABSTRACT

Objectives: To determine the antibiotic susceptibility of isolates of Streptococcus pneumoniae and Haemophilus influenzae collected in 2014-16 from patients with community-acquired respiratory infections in the Czech Republic. Methods: MICs were determined by CLSI broth microdilution and susceptibility was assessed using CLSI, EUCAST and pharmacokinetic/pharmacodynamic (PK/PD) breakpoints. Results: S. pneumoniae isolates (n = 200) showed high rates of susceptibility (>95%) to amoxicillin, amoxicillin/clavulanic acid, penicillin [intravenous (iv) non-meningitis], ceftriaxone, cefuroxime and the fluoroquinolones using CLSI breakpoints. Susceptibility to cefaclor and trimethoprim/sulfamethoxazole was 94%-94.5%, to penicillin (oral) 91.5% and to the macrolides 89.5%. Susceptibility of H. influenzae (n = 197) to amoxicillin/clavulanic acid, ceftriaxone, cefuroxime, azithromycin and the fluoroquinolones was ≥98% by CLSI criteria. Rates of susceptibility to the remaining agents were ≥75% except for clarithromycin at 37.1%. Great variability was seen across breakpoints, especially for the macrolides, cefaclor and cefuroxime (oral), 98.0% of H. influenzae showing susceptibility to the latter by CLSI criteria, 69.5% by PK/PD and 1.5% by EUCAST standards. The ß-lactamase rate was 13.7% with no ß-lactamase-negative-ampicillin-resistant (BLNAR) isolates by CLSI criteria. Conclusions: Antibiotic resistance among the two major respiratory pathogens remained low in the Czech Republic. These findings support local clinicians in continuing the historically restrictive use of antibiotics in the Czech Republic, with selection of narrower-spectrum agents for the empirical therapy of community-acquired respiratory tract infections. This highlights one of the great benefits of continuous surveillance of antimicrobial resistance: knowledge of current local resistance patterns reduces the need to choose broad-spectrum agents that contribute to increasing resistance worldwide.


Subject(s)
Anti-Bacterial Agents/pharmacology , Drug Resistance, Multiple, Bacterial , Epidemiological Monitoring , Haemophilus influenzae/drug effects , Streptococcus pneumoniae/drug effects , Adolescent , Adult , Aged , Anti-Bacterial Agents/pharmacokinetics , Cefuroxime/pharmacokinetics , Cefuroxime/pharmacology , Community-Acquired Infections/epidemiology , Czech Republic/epidemiology , Fluoroquinolones/pharmacokinetics , Fluoroquinolones/pharmacology , Haemophilus Infections/epidemiology , Humans , Macrolides/pharmacokinetics , Macrolides/pharmacology , Microbial Sensitivity Tests , Middle Aged , Pneumococcal Infections/epidemiology , Respiratory Tract Infections/epidemiology , Surveys and Questionnaires , Young Adult
7.
Folia Microbiol (Praha) ; 63(2): 141-146, 2018 Mar.
Article in English | MEDLINE | ID: mdl-28776170

ABSTRACT

Viridans group streptococci bloodstream infections (VGS BSI) remain a significant cause of mortality and morbidity in patients with severe neutropenia. The goal of our study was to evaluate clinical course and microbiological susceptibility of VGS BSI at our center. Retrospective analysis of all microbiologically documented bloodstream infections caused by VGS during the 9-year time period (from January 2006 until December 2014) was carried out. Only patients with severe neutropenia (< 500/µL) were included in the study. Clinical outcome and microbiological susceptibility pattern of isolates were recorded. Fifty-one individual patients with episode of VGS BSI were identified. The most frequent agent was Streptococcus mitis (23/51 cases, 45.1%). 88.2% (45/51) of patients were on recommended ciprofloxacin prophylaxis. 20/51 (39.2%) of patients suffered from mucositis at the time of diagnosis (10 patients had oral mucositis, 2 patients had bowel mucositis, and 8 patients both). Twenty-six patients (51.0%) had clinically relevant lung damage caused by VGS BSI (i.e., acute lung injury or acute respiratory distress syndrome). Twenty-four (47.0%) patients presented with bilateral lung infiltrated upon chest imaging, and two (4.0%) patients had unilateral lung infiltrates. Three patients (5.9%) died due to VGS BSI until day 28 of observation. No difference in signs of shock syndrome was observed in the patients during transplantation procedures compared to patients without transplantation as well as in a group received previous high-dose chemotherapy with cytosinarabinoside or in patients with mucositis. Only 3/51 of isolates (5.9%) were resistant to penicillin. All isolates were susceptible to empirical treatment. While the penicillin resistance of VGS remains low in middle Europe, initial antibiotic therapy of febrile neutropenia are still effective in most cases. The mortality and complication rates of VGS BSI were comparable to other studies, and no specific risk factor of shock presence could be identified.


Subject(s)
Bacteremia/microbiology , Hematologic Neoplasms/microbiology , Streptococcal Infections/microbiology , Viridans Streptococci/isolation & purification , Adult , Aged , Anti-Bacterial Agents/administration & dosage , Bacteremia/drug therapy , Female , Hematologic Neoplasms/drug therapy , Humans , Male , Middle Aged , Retrospective Studies , Streptococcal Infections/drug therapy , Viridans Streptococci/classification , Viridans Streptococci/drug effects , Viridans Streptococci/genetics , Young Adult
8.
New Microbes New Infect ; 8: 28-30, 2015 Nov.
Article in English | MEDLINE | ID: mdl-26594376

ABSTRACT

Spread of carbapenemase-producing bacteria has been described all over the world. This phenomenon may be accelerated by many factors, including wars and natural disasters. In this report, we described an NDM-1-producing Klebsiella pneumonia ST11 recovered from a patient injured during the Maidan revolution in Ukraine. To our knowledge, this is the first report of a carbapenemase-producing Enterobacteriaceae in Ukraine and one of several reports describing wound colonization/infection of humans injured during war.

9.
Epidemiol Mikrobiol Imunol ; 64(2): 87-91, 2015 Jun.
Article in English | MEDLINE | ID: mdl-26099612

ABSTRACT

OBJECTIVE: One of the most important threats of current medicine is the spread of multiresistant Gram-negative bacteria. We report here data from a six-month prevalence study on carbapenemase-producing K. pneumoniae and E. coli performed in Czech hospitals participating on European Survey on Carbapenemase-Producing Enterobacteriaceae (EuSCAPE). METHODS: Ten hospitals covering all regions of the Czech Republic were selected. During the study period (1st November 2013 to 30th April 2014), first ten carbapenem non-susceptible isolates of K. pneumoniae or E. coli isolated from non-surveillance specimens (i.e., blood, lower respiratory tract secretions, urine, puncture fluids, and wound secretions) of single successive patients were collected. Successive carbapenem-susceptible isolates of the same species were also preserved as controls. Susceptibility to 15 antibiotics was determined using EUCAST recommendations. Carbapenemase activity was detected by MALDI-TOF MS meropenem hydrolysis assay. Positive isolates were subjected for molecular typing (multi-locus sequence typing, identification of carbapenemase gene). RESULTS: During the study period, thirty non-susceptible isolates (K. pneumoniae n=28, E. coli n=2) were identified in 5 hospitals. Only two of them were confirmed to be carbapenemase producers. A NDM-1-producing K. pneumoniae ST11 was recovered from a patient, transferred from Ukraine, being injured during a Maidan revolution. The second isolate, an OXA-48-producing K. pneumoniae, belonging to ST101, was recovered from a patient admitted to a hospital for an ischemic stroke. CONCLUSIONS: This study again confirmed that the Czech Republic still belongs to the countries with low prevalence of carbapenemase-producing Enterobacteriaceae (CPE). Cases of CPE are usually restricted to an import from high-prevalence countries or countries with unknown epidemiological situation.


Subject(s)
Anti-Bacterial Agents/pharmacology , Bacterial Proteins/metabolism , Escherichia coli Infections/epidemiology , Escherichia coli/isolation & purification , Klebsiella Infections/epidemiology , Klebsiella pneumoniae/isolation & purification , beta-Lactamases/metabolism , Bacterial Proteins/genetics , Bacterial Typing Techniques , Carbapenems/pharmacology , Cross-Sectional Studies , Czech Republic/epidemiology , Escherichia coli/enzymology , Escherichia coli/genetics , Escherichia coli Infections/microbiology , Geography , Hospitals , Humans , Klebsiella Infections/microbiology , Klebsiella pneumoniae/enzymology , Klebsiella pneumoniae/genetics , Microbial Sensitivity Tests , Multilocus Sequence Typing , Prevalence , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Ukraine , beta-Lactamases/genetics
10.
Clin Microbiol Infect ; 21(2): 163.e1-8, 2015 Feb.
Article in English | MEDLINE | ID: mdl-25658555

ABSTRACT

Methicillin-resistant Staphylococcus aureus (MRSA) belonging to the multilocus sequence type clonal complex 59 (MLST CC59) is the predominant community-associated MRSA clone in Asia. This clone, which is primarily linked with the spa type t437, has so far only been reported in low numbers among large epidemiological studies in Europe. Nevertheless, the overall numbers identified in some Northern European reference laboratories have increased during the past decade. To determine whether the S. aureus t437 clone is present in other European countries, and to assess its genetic diversity across Europe, we analysed 147 S. aureus t437 isolates from 11 European countries collected over a period of 11 years using multiple locus variable number tandem repeat fingerprinting/analysis (MLVF/MLVA) and MLST. Additionally 16 S. aureus t437 isolates from healthy carriers and patients from China were included. Most isolates were shown to be monophyletic with 98% of the isolates belonging to the single MLVA complex 621, to which nearly all included isolates from China also belonged. More importantly, all MLST-typed isolates belonged to CC59. Our study implies that the European S. aureus t437 population represents a genetically tight cluster, irrespective of the year, country and site of isolation. This underpins the view that S. aureus CC59 has been introduced into several European countries, not being restricted to particular geographical regions or specific host environments. The European S. aureus t437 isolates thus bear the general hallmarks of a high-risk clone.


Subject(s)
Community-Acquired Infections/epidemiology , Community-Acquired Infections/microbiology , Methicillin-Resistant Staphylococcus aureus/classification , Methicillin-Resistant Staphylococcus aureus/genetics , Minisatellite Repeats , Multilocus Sequence Typing , Staphylococcal Infections/epidemiology , Asia/epidemiology , Europe/epidemiology , Humans , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Molecular Epidemiology , Staphylococcal Infections/microbiology
11.
Epidemiol Mikrobiol Imunol ; 63(3): 184-90, 2014 Sep.
Article in Czech | MEDLINE | ID: mdl-25412481

ABSTRACT

STUDY AIM: To determine the frequency of Campylobacter spp. isolated from humans in the Czech Republic and to test their susceptibility to antimicrobials commonly used to treat campylobacteriosis by the standard EUCAST method. MATERIAL AND METHODS: Consecutive Campylobacter isolates recovered from clinical specimens in 49 microbiological laboratories within one month in 2013 were identified using matrix-assisted laser desorption/ionization-time-of-flight mass spectrometry (MALDI-TOF MS). Susceptibility to erythromycin, ciprofloxacin, and tetracycline was tested by the microdilution method and the results were interpreted based on the EUCAST clinical breakpoints to differentiate between susceptible and resistant strains. RESULTS: Of the study set of 769 Campylobacter spp. strains, 90.1 % were assigned to C. jejuni, 9.8 % to C. coli, and a single strain to C. fetus (0.1 %). Except one blood isolate of C. jejuni, all other isolates were recovered from the stool. Ciprofloxacin resistance (MIC > 0.5 mg/l) was detected in 61.9 % strains of C. jejuni and in 72.0 % strains of C. coli, tetracycline resistance (MIC > 2 mg/l) was detected in 32.0 % of strains of both species, and erythromycin resistance was found in 0.3 % of strains of C. jejuni (MIC > 8 mg/l) and in 2.7 % of strains of C. coli (MIC > 4 mg/l). A C. coli strain was multidrug resistant (i.e. resistant to all three antimicrobials tested). CONCLUSIONS: Despite the fact that most Campylobacter infections in humans cure on their own, the resistance of the causative strains to the antimicrobials of choice and alternative agents needs to be studied because of its relevance to the treatment of severe cases that require antibiotics. Resistance to macrolides was found rather infrequently in this study in both C. jejuni (0.1 %) and C. coli (2.7 %) strains. Nevertheless, alarming is ciprofloxacin resistance confirmed in 61.9 % of C. jejuni strains and 72.0 % C. coli strains. As the species C. coli is more often resistant to antimicrobials than C. jejuni and ciprofloxacin along with other fluoroquinolones is commonly used to treat severe food-borne and generalized infections, it is crucial to identify the Campylobacter strains to the species level and to test their susceptibility to relevant antibiotics by a valid and reproducible method to be able to provide an effective therapy.


Subject(s)
Anti-Bacterial Agents/pharmacology , Campylobacter Infections/microbiology , Campylobacter jejuni/drug effects , Campylobacter jejuni/isolation & purification , Ciprofloxacin/pharmacology , Erythromycin/pharmacology , Tetracycline/pharmacology , Campylobacter jejuni/genetics , Czech Republic , Feces/microbiology , Humans , Macrolides/pharmacology , Microbial Sensitivity Tests
12.
Euro Surveill ; 18(45): 20626, 2013 Nov 07.
Article in English | MEDLINE | ID: mdl-24229789

ABSTRACT

Carbapenemase-producing Enterobacteriaceae and Pseudomonas spp. are increasingly reported in many countries all over the world. Due to the resistance of those bacteria to almost all antibiotics (e.g.beta-lactams, aminoglycosides, fluoroquinolones),treatment options are seriously limited. In the Czech Republic, the incidence of carbapenemase-producing Enterobacteriaceae seems to be low, restricted to only three cases detected between 2009 and 2010.Here, we describe molecular typing of 15 carbapenemase-producing Klebsiella pneumoniae isolates identified in the Czech Republic during 2011. Five VIM-1-producing isolates belonging to sequence type (ST)11 and one VIM-4-producing isolate of ST1029 have been detected. blaVIM-1 and blaVIM-4 as a part of class 1 integrons were chromosomally located or carried by a plasmid belonging to A/C replicon type (blaVIM-4). KPC-3-producing isolates of ST512, recovered from six patients, caused an outbreak. Three more isolates producing KPC-2 enzyme belonged to ST258. Both blaKPCgenes were part of the Tn4401a transposon carried on plasmids of the pKpQIL type. The isolates were resistant to all antibiotics tested except colistin and/or gentamicin.Four of these 15 strains were recovered from patients repatriated to the Czech Republic from Greece and Italy. This is the first report of outbreaks caused by carbapenemase-producing Enterobacteriaceae in the Czech Republic.


Subject(s)
Bacterial Proteins/metabolism , Klebsiella Infections/diagnosis , Klebsiella pneumoniae/classification , Klebsiella pneumoniae/isolation & purification , beta-Lactamases/metabolism , Anti-Bacterial Agents/pharmacology , Carbapenems/pharmacology , Czech Republic/epidemiology , Drug Resistance, Multiple, Bacterial , Female , Greece , Humans , Incidence , Integrons/genetics , Italy , Klebsiella Infections/enzymology , Klebsiella Infections/epidemiology , Klebsiella pneumoniae/drug effects , Klebsiella pneumoniae/genetics , Male , Microbial Sensitivity Tests , Molecular Typing , Plasmids/genetics , Plasmids/metabolism , Travel , beta-Lactam Resistance
13.
Euro Surveill ; 17(7)2012 Feb 16.
Article in English | MEDLINE | ID: mdl-22370014

ABSTRACT

We describe the isolation of an NDM-1-producing Acinetobacter baumannii in a Czech patient repatriated in July 2011 from Egypt. The infection spread to another patient on the same ward. Both isolates showed the same resistance pattern and were susceptible only to colistin. They had an identical PFGE pattern and belonged to the same sequence type ST 1. Sequencing of the blaNDM gene identified the NDM-1 variant of the carbapenemase, surrounded by two copies of insertion sequence ISAba125.


Subject(s)
Acinetobacter Infections , Acinetobacter baumannii/genetics , Pneumonia, Ventilator-Associated/microbiology , beta-Lactamases/genetics , Acinetobacter Infections/diagnosis , Acinetobacter Infections/drug therapy , Acinetobacter Infections/transmission , Acinetobacter baumannii/enzymology , Acinetobacter baumannii/isolation & purification , Anti-Bacterial Agents/therapeutic use , Bacterial Proteins/biosynthesis , Bacterial Typing Techniques , Czech Republic , Egypt , Electrophoresis, Gel, Pulsed-Field , Female , Gene Amplification , Humans , Male , Microbial Sensitivity Tests , Molecular Sequence Data , Polymerase Chain Reaction , Travel , beta-Lactam Resistance , beta-Lactamases/biosynthesis
14.
Epidemiol Mikrobiol Imunol ; 60(1): 4-9, 2011 Feb.
Article in Czech | MEDLINE | ID: mdl-21542230

ABSTRACT

The interpretation of the susceptibility of Gram-negative rods to beta-lactams is currently under discussion in CLSI and EUCAST--two authorities on determination of clinical breakpoints. This article summarizes the current knowledge about clinical breakpoints in enterobacteria and proposes guidance for clinical microbiology laboratories in the Czech Republic.


Subject(s)
Carbapenems/pharmacology , Cephalosporins/pharmacology , Enterobacteriaceae/drug effects , Enterobacteriaceae/enzymology , beta-Lactamases/biosynthesis , beta-Lactams/pharmacology , Carbapenems/pharmacokinetics , Cephalosporins/pharmacokinetics , Enterobacteriaceae/metabolism , Hydrolysis , Microbial Sensitivity Tests , beta-Lactams/pharmacokinetics
15.
Epidemiol Mikrobiol Imunol ; 60(1): 10-20, 2011 Feb.
Article in Czech | MEDLINE | ID: mdl-21542231

ABSTRACT

STUDY OBJECTIVES: To analyze trends in the resistance of Streptococcus pneumoniae to penicillin and macrolides and of S. pyogenes to macrolides over a 14-year period and to determine serotypes and molecular characteristics in a selected group of S. pneumoniae strains resistant to these antibiotics. MATERIAL AND METHODS: Susceptibility to antibiotics was tested by the participating laboratories by the disk diffusion method in isolates of both bacterial species from the lower and upper respiratory tract from 1996-2009. The National Reference Laboratory for Antibiotics (NRL/ATB) determined the minimal inhibitory concentrations of penicillin and erythromycin for invasive pneumococcal isolates from 2000-2009 and performed multilocus sequence analysis of selected resistant strains. RESULTS: Over the 14-year period monitored, penicillin resistance of S. pneumoniae isolates from the upper and lower respiratory tract showed a slightly downward trend similarly to blood isolates monitored since 2000. Resistance to macrolides in S. pneumoniae isolates was lower than penicillin resistance, regardless of the sample origin until 2005, but became higher than penicillin resistance in 2006 to follow a continuously upward trend since then. In 2009, the penicillin resistance rates of S. pneumoniae isolates from the upper respiratory tract, lower respiratory tract and blood were 3.5%, 5.1% and 4.7%, respectively, while the respective erythromycin resistance rates reached 8.4%, 12.2% and 5.5%. When using the new clinical breakpoints for pneumococci from pneumonia cases depending on penicillin dose and administration interval, only two (0.1%) of 1528 strains from the blood were confirmed as penicillin resistant (MIC 4 mg/l). Resistance of S. pyogenes to macrolides, reported in 16.5% of strains in 2001, sharply decreased to 9% in 2003 as a result of an intervention to promote the use of penicillin for the treatment of tonsillopharyngitis, and reached 11.1% in 2009. Among penicillin resistant strains of S. pneumoniae, the spread of clone Spain9V-3 (ST156) was confirmed, and among S. pneumoniae strains resistant to erythromycin alone, the spread of clones Poland6B-20 (ST315) and England9V-14 (ST9) was found. CONCLUSIONS: The favourable low prevalence of penicillin resistance among S. pneumoniae strains, which in addition is negligible in the light of the new clinical breakpoints for penicillin resistance in strains from patients with pneumonia, contrasts with the ever increasing resistance of this species to macrolides. The highest rates of resistance to macrolides found in the strains isolated mainly from the sputum of adult patients confirm the preference for macrolides over the drugs of choice amoxicillin or penicillin G in the treatment of adults with pneumococcal pneumonia. Further spread of successful multiresistant clones of S. pneumoniae, the presence of which has been revealed in the Czech Republic, can only be prevented by a radical reduction in overuse or misuse of antibiotics.


Subject(s)
Macrolides/pharmacology , Penicillins/pharmacology , Streptococcus pneumoniae/drug effects , Streptococcus pyogenes/drug effects , Drug Resistance, Bacterial , Humans , Microbial Sensitivity Tests , Penicillin Resistance , Streptococcus pneumoniae/isolation & purification , Streptococcus pyogenes/isolation & purification
16.
Epidemiol Mikrobiol Imunol ; 59(1): 13-20, 2010 Feb.
Article in Czech | MEDLINE | ID: mdl-21110444

ABSTRACT

This case report describes a two-step protocol for the identification of the causative agent of nocardiosis in a patient with brain abscess, antibiotic susceptibility testing and etiological treatment after neurosurgery. The patient treated with corticosteroids for pulmonary fibrosis and presenting with multiple neurological manifestations was admitted to a neurosurgery clinic. CT and contrast MRI revealed an expansive multilocular lesion 45 x 35 mm in size in the left parietal lobe, differentially diagnosed as malignant glioma. The lesion was biopsied and the histology showed a brain abscess containing white blood cells and dead tissue. The aspirated pus culture yielded bacteria of the genus Nocardia that were further identified, in the first step, by phenotypic methods (Gram positivity, partial acidoresistance, airborne mycelium detection, growth at 45 degrees C, lysozyme resistance and antibiotic resistance phenotype) as belonging to resistance phenotype V., v.s. N. farcinica (resistance to aminoglycosides except amikacin and to third-generation cephalosporins). In the second step of the polyphasic identification, rDNA was isolated and a 1000 bp part of the 16S rRNA gene was sequenced. Sequence comparison with the GenBank database using BLAST software identified the agent as N. farcinica (100%). The isolate was tested for susceptibility by the NCCLS /CLSI dilution method and showed good susceptibility to co-trimoxazole, amikacin and imipenem. The patient was treated with long-term intravenous cotrimoxazole acid in combination with amikacin and his clinical condition and laboratory parameters of inflammation improved. N. farcinica is among the three most frequently isolated Nocardia species in Europe as well as in the Czech Republic where it was repeatedly recovered from the lungs and respiratory tract of immunocompromised patients with systemic nocardiosis.


Subject(s)
Brain Abscess/diagnosis , Lung Diseases, Interstitial/complications , Nocardia Infections/diagnosis , Aged , Brain Abscess/drug therapy , Brain Abscess/microbiology , Glucocorticoids/therapeutic use , Humans , Lung Diseases, Interstitial/drug therapy , Male , Nocardia Infections/complications , Nocardia Infections/drug therapy
17.
Epidemiol Mikrobiol Imunol ; 59(3): 103-6, 2010 Aug.
Article in Czech | MEDLINE | ID: mdl-20925245

ABSTRACT

In the last decade, there has been a rapid development in the use of molecular genetics methods in clinical microbiology. Novel technologies bring new knowledge and approaches to various disciplines of microbiology--taxonomy, identification of microbes, clinical diagnosis, epidemiology of infectious diseases and antibiotic resistance. This article summarizes the conclusions from the workshop of the Molecular Microbiology Working Group TIDE held during the Second Annual Meeting of the Society for Medical Microbiology of the J. E. Purkyne Czech Medical Association.


Subject(s)
Microbiological Techniques , Molecular Biology , Molecular Diagnostic Techniques , Bacteria , DNA, Bacterial/analysis , Humans , Infections/diagnosis
18.
Folia Microbiol (Praha) ; 55(6): 669-72, 2010 Nov.
Article in English | MEDLINE | ID: mdl-21253918

ABSTRACT

Biochemical and serological profiles of isolates of Plesiomonas shigelloides were assayed using standard procedures in isolates from various clinical samples. Seventy-four isolates, including P. shigelloides type strain, were further characterized by MALDI-TOF MS using 3-methoxy-4-hydroxycinnamic acid as matrix. Multiple ions in the 3- to 12-kDa mass range were found in the spectra of each strain, from which the "species-identifying" unique biomarker ions were identified. After creating the species-specific patterns, a spectral database was generated for reliable, rapid, reproducible and accurate identification of Plesiomonas strains. The classical strain description (biochemical and serological) was thus complemented with the metabolic (proteomic) characterization.


Subject(s)
Bacteriological Techniques/methods , Plesiomonas/classification , Serotyping/methods , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Gram-Negative Bacterial Infections/microbiology , Plesiomonas/chemistry , Plesiomonas/immunology , Plesiomonas/isolation & purification
19.
Euro Surveill ; 14(4)2009 Jan 29.
Article in English | MEDLINE | ID: mdl-19215712

ABSTRACT

Since 2005, invasive isolates of Pseudomonas aeruginosa have been collected in the Czech Republic as part of the European Antibiotic Resistance Surveillance System (EARSS). Forty-eight microbiology laboratories throughout the country including approximately 81% of the population provide consecutive isolates from blood and cerebrospinal fluid. Surprisingly, no metallo-beta-lactamase (MBL) was found in 1,259 invasive isolates tested over the past three years until the detection of two MBL-producing strains in mid-2008. Both strains were isolated from patients hospitalised in one regional hospital. The MBL was identified as IMP-7, which had been seen previously in Canada, Japan, Malaysia and Slovakia.


Subject(s)
Pseudomonas Infections/diagnosis , Pseudomonas Infections/microbiology , Pseudomonas aeruginosa/enzymology , Pseudomonas aeruginosa/isolation & purification , beta-Lactamases/metabolism , Adult , Aged , Czech Republic , Female , Humans , Male , Pseudomonas aeruginosa/classification , Species Specificity
20.
Epidemiol Infect ; 137(9): 1233-6, 2009 Sep.
Article in English | MEDLINE | ID: mdl-19203407

ABSTRACT

A survey of 280 attendees at a veterinary meeting in the Czech Republic in 2008 revealed a carriage rate of 0.7% for methicillin-resistant Staphylococcus aureus (MRSA). The two strains isolated were of distinct genetic lineages, carried type IV SCCmec determinants and were negative for Panton-Valentine leukocidin genes. The MRSA positivity rates for veterinarians in the Czech Republic is considerably lower than reported elsewhere.


Subject(s)
Animal Technicians , Carrier State/epidemiology , Carrier State/microbiology , Methicillin-Resistant Staphylococcus aureus/isolation & purification , Population Surveillance , Veterinarians , Adult , Aged , Bacterial Proteins/genetics , Bacterial Toxins/genetics , Czech Republic/epidemiology , Exotoxins/genetics , Female , Genotype , Humans , Leukocidins/genetics , Male , Methicillin-Resistant Staphylococcus aureus/genetics , Middle Aged , Penicillin-Binding Proteins , Prevalence , Young Adult
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