Comparison of three sampling methods for small-bodied fish in lentic nearshore and open water habitats.

We performed a preliminary evaluation of a mobile sampling platform with adjustable push net and live box (Platform) against two common methods for sampling small-bodied fish (i.e., 10-100 mm) in two distinct lentic habitats. Nearshore (NS) littoral habitat was sampled by Platform and beach seine, and open water (OW) pelagic habitat by Platform and Kodiak trawl. Our goal was to evaluate the Platform's ability to describe fish assemblage structure across habitat types in contrast to common techniques restricted to single habitat types that are less comparable due to gear-specific bias. Platform sample speed had a significant positive effect on recapture efficiency of both nearly neutrally buoyant objects and marked fish. Marked fish recapture efficiencies were similar for Platform in NS and OW, indicating similar efficiency across habitat types. Platform capture efficiency was similar to beach seine and greater than Kodiak trawl. With similar sampling time, the Platform collected more individuals and taxa in NS relative to beach seine and in OW relative to Kodiak trawl. Greater taxa detection by the Platform suggests that it may be effective at detecting species that are numerically rare in specific habitats when compared to these methods. Fish CPUE was significantly greater NS regardless of technique. However, by using the Platform, there is greater confidence that this difference was reliable and not a gear selectivity artifact. Overall, this preliminary study demonstrates the Platform's potential to collect standardized data across NS and OW habitats, track ontogenetic habitat shifts, and detect differences in small-bodied fish taxa richness, relative abundance, and density between NS and OW habitats. Continued experimentation beyond a single reservoir and fish size range is required before consensus can be established regarding the utility of this new push net design.

Tissue Contaminant Burdens in San Francisco Estuary White Sturgeon (Acipenser transmontanus): Implications for Population Recovery.

The San Francisco Estuary (SFE) is heavily influenced by anthropogenic activities, including historic and chronic contaminant inputs. These contaminants can adversely affect SFE fish populations, particularly white sturgeon, because they are a benthic dwelling, long-lived species. We measured a suite of metals and organic contaminants in liver and gonad tissues of 25 male and 32 female white sturgeon as well as several physiological indicators of sturgeon health. Most sturgeon (68% of males and 83% of females) were estimated to be between 13 and 17 years of age. Sturgeon tissues had elevated concentrations of several metals, including As, Ba, Cd, Cu, Cr, Pb, Hg, Ni, Se, and Zn. The most frequently detected organic contaminants in sturgeon livers and gonads were DDE, PCBs, PBDEs, and galaxolide. Selenium was detected at levels similar to those shown to cause impaired liver physiology and reproductive success in white sturgeon. Observed Hg levels were higher than those shown to result in lower condition factor and gonadosomatic indices in white sturgeon. Liver galaxolide levels correlated with decreased plasma estradiol levels in female sturgeon. The Cd, As, and Cu warrant further investigation, because they were detected at levels known to impair fish health. Our results suggest contaminants are negatively affecting SFE white sturgeon health and fitness. Future SFE white sturgeon contaminant research is suggested.

Controls on the entrainment of juvenile Chinook Salmon (Oncorhynchus tshawytscha) into large water diversions and estimates of population-level loss.

Diversion of freshwater can cause significant changes in hydrologic dynamics and this can have negative consequences for fish populations. Additionally, fishes can be directly entrained into diversion infrastructure (e.g. canals, reservoirs, pumps) where they may become lost to the population. However, the effect of diversion losses on fish population dynamics remains unclear. We used 15 years of release and recovery data from coded-wire-tagged juvenile Chinook Salmon (Oncorhynchus tshawytscha) to model the physical, hydrological and biological predictors of salvage at two large water diversions in the San Francisco Estuary. Additionally, entrainment rates were combined with estimates of mortality during migration to quantify the proportion of total mortality that could be attributed to diversions. Statistical modeling revealed a strong positive relationship between diversion rate and fish entrainment at both diversions and all release locations. Other significant relationships were specific to the rivers where the fish were released, and the specific diversion facility. Although significant relationships were identified in statistical models, entrainment loss and the mean contribution of entrainment to total migration mortality were low. The greatest entrainment mortality occurred for fish released along routes that passed closest to the diversions and certain runs of Chinook Salmon released in the Sacramento River suffered greater mortality but only at the highest diversion rates observed during the study. These results suggest losses at diversions should be put into a population context in order to best inform effective management of Chinook Salmon populations.

Evidence supporting the importance of terrestrial carbon in a large-river food web.

Algal carbon has been increasingly recognized as the primary carbon source supporting large-river food webs; however, many of the studies that support this contention have focused on lotic main channels during low-flow periods. The flow variability and habitat-heterogeneity characteristic of these systems has the potential to significantly influence food web structure and must be integrated into models of large-river webs. We used stable-isotope analysis and IsoSource software to model terrestrial and algal sources of organic carbon supporting consumer taxa in the main channel and oxbow lakes of the Brazos River, Texas, USA, during a period of frequent hydrologic connectivity between these habitat types. Standardized sampling was conducted monthly to collect production sources and consumer species used in isotopic analysis. Predictability of hydrologic connections between habitat types was based on the previous 30 years of flow data. IsoSource mixing models identified terrestrial C3 macrophytes (riparian origin) as the primary carbon source supporting virtually all consumers in the main channel and most consumers in oxbow lakes. Small-bodied consumers (<100 mm) in oxbow lakes assimilated large fractions of algal carbon whereas this pattern was not apparent in the main channel. Estimates of detritivore trophic positions based on delta15N values indicated that terrestrial material was likely assimilated via invertebrates rather than directly from detritus. High flows in the river channel influenced algal standing stock, and differences in the importance of terrestrial and algal production sources among consumers in channel vs. oxbow habitats were associated with patterns of flooding. The importance of terrestrial material contradicts the findings of recent studies of large-river food webs that have emphasized the importance of algal carbon and indicates that there can be significant spatial, temporal, and taxonomic variation in carbon sources supporting consumers in large rivers.