A novel somatic mutation in POLE exonuclease domain associated with ultra-mutational signature and MMR deficiency in endometrial cancer: a case report.

BACKGROUND: Defect in proofreading exonuclease activity of polymerases epsilon and delta (Pols ε and δ) leads to mutagenesis and genomic instability and has been described in several cancer types. Somatic POLE exonuclease domain mutations (EDMs) have been reported in 7-12% endometrial cancers (ECs) and defined a subgroup of endometrial cancers with ultrahigh somatic mutation frequencies, high tumor infiltrated lymphocytes and favorable outcomes. CASE PRESENTATION: Herein, we presented a novel somatic mutation in POLE exonuclease domain associated with ultra-mutational signature and MMR deficiency in endometrial cancer. A novel POLE EDM (p.T278K) was found by a 11-gene NGS panel. The MSS status detected by the MSI test was inconsistent with the dMMR status by IHC. The loss of MSH6 expression in the tumor could be interpreted by the two nonsense mutations (p.E1234* and p.E1322*) of the MSH6 gene which may lead to truncated proteins. The T278K mutation was pathogenic identified by a 602-gene NGS panel with 27.3% of C > A substitution, 0.6% of indels, 0.6% of C > G substitution and a high TMB of 203.8 mut/Mb. CONCLUSIONS: We report an endometrial cancer patient harbored a novel somatic POLE T278K mutation. This mutation was a novel pathogenic POLE EDM should be considered as "POLE (ultramutated)" in clinical practice for the molecular classification of EC.

Binding Gibbs energy of ionic liquids to calf thymus DNA: a fluorescence spectroscopy study.

The binding constants and binding Gibbs energies of [C(n)mim]Br (n = 4, 6, 8, 10, 12) and [C(4)mim][BF(4)] to calf thymus DNA-D1501 have been determined by the fluorescence measurements of the pyrene probe. It was found that values of the binding Gibbs energy decrease linearly with the increase of alkyl chain length of the ILs. Based on this observation, Gibbs energies for both the interaction between DNA and -CH(2)- of the ILs and the interaction between DNA and the cationic head group of the ILs have been reported. The result suggests that electrostatic interaction between DNA and the cationic head group of the ILs is predominant for the binding of the ILs with DNA although contribution from the non-electrostatic interaction between DNA and the alkyl chain of the ILs increases with increasing alkyl chain length of the ILs. The information obtained here may have application in the design of novel ILs-based DNA extraction/separation systems.

Structural effects of anions and cations on the aggregation behavior of ionic liquids in aqueous solutions.

The formation of ionic liquids aggregates in aqueous solution is of great importance to the future applications of ionic liquids. In this work, aggregation behavior of 1-alkyl-3-methylimidazolium salts [C8mim]X (X = Cl, Br, [NO3], [CH3COO], [CF3COO], [CF3SO3], and [ClO4]), 1-octyl-4-methylpyridinium bromide (4m-[C8pyr]Br), and 1-methyl-1-octylpyrrolidinium ([C8mpyrr]Br) has been investigated in aqueous solutions by conductivity, volume, fluorescence, dynamic light scattering, and transmission electron microscopy. The critical aggregation concentration (CAC), ionization degree of the aggregates alpha, the standard Gibbs energy of aggregation deltaG(m)degrees, the average aggregation number N, the apparent molar volumes at critical aggregation concentration V(phi,CAC), the apparent molar volumes in aggregation phase V(phi)mic, and the change of the apparent molar volumes upon aggregation deltaV(phi,m), have been derived from the experimental data for these ionic liquids. It is found that both nature of the anions and ring type of the cations significantly affect the aggregation in aqueous solution. The anionic effect basically follows the Hofmeister series, and the ability of anionic hydration is predominant for the aggregation behavior of the ionic liquids. Hydrophobicity and steric hindrance of the cations as well as binding strength of the cations with the anions are suggested to play important roles in the aggregation of [C8mim]Br, 4m-[C8pyr]Br, and [C8mpyrr]Br. The investigated ILs were found to form spherical aggregates. Structures of anions and cations have very weak effects on the morphology, but they do affect the aggregate sizes.