Phylogenomics, taxonomy and morphological characters of the Microdochiaceae (Xylariales, Sordariomycetes).

Species of the family Microdochiaceae (Xylariales, Sordariomycetes) have been reported from worldwide, and collected from different plant hosts. The proposed new genus and two new species, viz., Macroidriella gen. nov., M.bambusae sp. nov. and Microdochiumaustrale sp. nov., are based on multi-locus phylogenies from a combined dataset of ITS rDNA, LSU, RPB2 and TUB2 with morphological characteristics. Microdochiumsinense has been collected from diseased leaves of Phragmitesaustralis and this is the first report of the fungus on this host plant. Simultaneously, we annotated 10,372 to 11,863 genes, identified 4,909 single-copy orthologous genes, and conducted phylogenomic analysis based on genomic data. A gene family analysis was performed and it will expand the understanding of the evolutionary history and biodiversity of the Microdochiaceae. The detailed descriptions and illustrations of species are provided.

Photodissociation dynamics of SO2 via the G̃1B1 state: The O(1D2) and O(1S0) product channels.

Produced by both nature and human activities, sulfur dioxide (SO2) is an important species in the earth's atmosphere. SO2 has also been found in the atmospheres of other planets and satellites in the solar system. The photoabsorption cross sections and photodissociation of SO2 have been studied for several decades. In this paper, we reported the experimental results for photodissociation dynamics of SO2 via the G̃1B1 state. By analyzing the images from the time-sliced velocity map ion imaging method, the vibrational state population distributions and anisotropy parameters were obtained for the O(1D2) + SO(X3Σ-, a1Δ, b1Σ+) and O(1S0) + SO(X3Σ-) channels, and the branching ratios for the channels O(1D2) + SO(X3Σ-), O(1D2) + SO(a1Δ), and O(1D2) + SO(b1Σ+) were determined to be ∼0.3, ∼0.6, and ∼0.1, respectively. The SO products were dominant in electronically and rovibrationally excited states, which may have yet unrecognized roles in the upper planetary atmosphere.

Three New Species of Apiospora (Amphisphaeriales, Apiosporaceae) on Indocalamus longiauritus, Adinandra glischroloma and Machilus nanmu from Hainan and Fujian, China.

Apiospora is widely distributed throughout the world, and most of its hosts are Poaceae. In this study, Arthrinium-like strains were isolated from non-Poaceae in the Hainan and Fujian provinces of China. Based on the combined DNA sequence data of the internal transcriptional spacer (ITS), partial large subunit nuclear rDNA (LSU), translation extension factor 1-α gene (TEF1-α) and ß-tubulin (TUB2), the collected Apiospora specimens were compared with known species, and three new species were identified. Based on morphological and molecular phylogenetic analyses, Apiospora adinandrae sp. nov., A. bawanglingensis sp. nov. and A. machili sp. nov. are described and illustrated.

Three New Species of Microdochium (Microdochiaceae, Xylariales) on Bambusaceae sp. and Saprophytic Leaves from Hainan and Yunnan, China.

Species of the genus Microdochium (Microdochiaceae, Xylariales) have been reported from the whole world and separated from multiple plant hosts. The primary aim of the present study is to describe and illustrate three new species isolated from the leaf spot of Bambusaceae sp. and saprophytic leaves in Hainan and Yunnan provinces, China. The proposed three species, viz., Microdochium bambusae, M. nannuoshanense and M. phyllosaprophyticum, are based on multi-locus phylogenies from a combined dataset of ITS rDNA, LSU, RPB2 and TUB2 in conjunction with morphological characteristics. Descriptions and illustrations of three new species in the genus are provided.

Three New Species of Gongronella (Cunninghamellaceae, Mucorales) from Soil in Hainan, China Based on Morphology and Molecular Phylogeny.

The genus Gongronella is important in agriculture and industry by secreting various natural bioactive metabolites such as chitosanases and organic acids. During the most recent 8 years, a total of 14 new species have been described, remarkably enriching the diversity of this genus. In this study, we added three more new species to this valuable genus, based on a combination of morphological traits and phylogenetic information. Six strains of the genus Gongronella were isolated from soil collected in Hainan Province, China. Phylogenetic analyses of ITS and LSU rDNA sequences grouped these strains into three independent clades. According to their unique morphological characteristics, they were classified as G. multiramosa sp. nov., G. qichaensis sp. nov. and G. oleae sp. nov. The G. multiramosa was characterized by multiple branched sporangiophores and was closely related to G. pedratalhadensis. The G. qichaensis was characterized by obscure collars and closely related to G. butleri, G. hydei and G. banzhaoae. The G. oleae was characterized by the presence of oil droplets in the sporangiospores and was closely related to G. chlamydospora and G. multispora. Their descriptions and illustrations were provided, and their differences from morphological allies and phylogenetic-related species are discussed.

Morphological and Phylogenetic Analyses Reveal Three New Species of Pestalotiopsis (Sporocadaceae, Amphisphaeriales) from Hainan, China.

Species of Pestalotiopsis were mainly introduced as endophytes, plant pathogens or saprobes from various hosts. In this study, ten strains were isolated from Ficus macrocarpa, Phoebe zhennan and Spatholobus suberectus in China. Based on multilocus phylogenies from the internal transcribed spacer (ITS), the partial translation elongation factor 1-alpha gene (tef1α) and the partial beta-tubulin gene (tub2), in conjunction with morphological characteristics, we describe three new species, viz., Pestalotiopsis ficicola sp. nov., P. phoebes sp. nov. and P. spatholobi sp. nov.

Photodissociation dynamics of SO2 between 193 and 201 nm.

The nonadiabatic interactions between the C̃ state and neighboring electronic states of SO2 have attracted much attention; however, the predissociation mechanisms are not yet completely understood. In this work, the predissociation dynamics of SO2 via its C̃ state have been investigated at λ = 193-201 nm by using the time-sliced velocity map ion imaging technique. The translational energy distributions and the branching ratios of the O(3PJ=2,1,0) spin-orbit products at six photolysis wavelengths have been acquired. The SO(3Σ-) product population gradually decreases in v = 0 and increases in v = 2 as the photolysis wavelength decreases. The branching ratios of O(3P J=2,1,0) products are almost similar at most wavelengths, except at 194.8 nm. Our data suggest that the predissociation between 193 and 201 nm is via an avoided crossing between the C̃ state and the repulsive triplet 23A' state. The state-to-state dynamical pictures shown in this work provide a rigorous test of the potential energy surfaces (PESs) of the SO2 and the nonadiabatic couplings between these PESs.

Slice imaging study of NO2 photodissociation via the 12B2 and 22B2 states: the NO(X2Π) + O(3PJ) product channel.

The state-resolved photodissociation of NO2via the 12B2 and 22B2 excited states has been investigated by using time-sliced velocity-mapped ion imaging technique. The images of the O(3PJ=2,1,0) products at a series of excitation wavelengths are measured by employing a 1 + 1' photoionization scheme. The total kinetic energy release (TKER) spectra, NO vibrational state distributions and anisotropy parameters (ß) are derived from the O(3PJ=2,1,0) images. For the 12B2 state photodissociation of NO2, the TKER spectra mainly present a non-statistical vibrational state distribution of the NO co-products, and the profiles of most vibrational peaks display a bimodal structure. The ß values show a gradual decrease with the photolysis wavelength increasing except for a sudden increase at 357.38 nm. The results suggest that the NO2 photodissociation via the 12B2 state proceeds via the non-adiabatic transition between the 12B2 and X̃2A1 states, leading to the NO(X2Π) + O(3PJ) products with wavelength-dependent rovibrational distributions. As for photodissociation of NO2via the 22B2 state, the NO vibrational state distribution is relatively narrow with the main peak shifting from v = 1, 2 at 235.43-249.22 nm to v = 6 at 212.56 nm. The ß values exhibit two distinctly different angular distributions, i.e., near isotropic at 249.22 and 246.09 nm and anisotropic at the rest of the excitation wavelengths. These results are consistent with the fact that the 22B2 state potential energy surface has a barrier, and the dissociation process is fast when the initial populated level is above this barrier. A bimodal vibrational state distribution is clearly observed at 212.56 nm, in which the main distribution (peaking at v = 6) is ascribed to dissociation via an avoided crossing with the higher electronically excited state while the subsidiary distribution (peaking at v = 11) likely arises due to dissociation via the internal conversion to the 12B2 state or to the X̃ ground state.

Morphological and phylogenetic analyses reveal two new species and a new record of Apiospora (Amphisphaeriales, Apiosporaceae) in China.

The genus Apiospora includes endophytes, pathogens and saprobes, with a wide host range and geographic distribution. In this paper, six Apiospora strains isolated from diseased and healthy tissues of bamboo leaves from Hainan and Shandong provinces in China were classified using a multi-locus phylogeny based on a combined dataset of ITS, LSU, tef1 and tub2, in conjunction with morphological characters, host association and ecological distribution. Two new species, Apiosporadongyingensis and A.hainanensis, and a new record of A.pseudosinensis in China, are described based on their distinct phylogenetic relationships and morphological analyses. Illustrations and descriptions of the three taxa are provided, along with comparisons with closely related taxa in the genus.

Uptake, tolerance, and detoxification mechanisms of antimonite and antimonate in Boehmeria nivea L.

Boehmeria nivea L. (ramie) is a promising phytoremediation plant for antimony (Sb)-contaminated soils. However, the uptake, tolerance, and detoxification mechanisms of ramie to Sb, which are the basis for finding efficient phytoremediation strategies, remain unclear. In the present study, ramie was exposed to 0, 1, 10, 50, 100, and 200 mg/L of antimonite (Sb(III)) or antimonate (Sb(V)) for 14 days in hydroponic culture. The Sb concentration, speciation, subcellular distribution, and antioxidant and ionomic responses in ramie were investigated. The results illustrated that ramie was more effective in the uptake of Sb(III) than Sb(V). Most of the Sb accumulated in ramie roots, with the highest level reaching 7883.58 mg/kg. Sb(V) was the predominant species in leaves, with 80.77-96.38% and 100% in the Sb(III) and Sb(V) treatments, respectively. Immobilization of Sb on the cell wall and leaf cytosol was the primary mechanism of accumulation. Superoxide dismutase (SOD), catalase (CAT), and peroxidase (POD) contributed significantly to root defense against Sb(III), while CAT and glutathione peroxidase (GPX) were the major antioxidants in leaves. CAT and POD played crucial roles in the defense against Sb(V). B, Ca, K, Mg, and Mn in Sb(V)-treated leaves and K and Cu in Sb(III)-treated leaves may be related to the biological processes of Sb toxicity mitigation. This study is the first to investigate the ionomic responses of plants toward Sb and could provide valuable information for the phytoremediation of Sb-polluted soils.

Taxonomy, Phylogeny, Divergence Time Estimation, and Biogeography of the Family Pseudoplagiostomataceae (Ascomycota, Diaporthales).

Species of Pseudoplagiostomataceae were mainly introduced as endophytes, plant pathogens, or saprobes from various hosts. Based on multi-locus phylogenies from the internal transcribed spacers (ITS), the large subunit of nuclear ribosomal RNA gene (LSU), partial DNA-directed RNA polymerase II subunit two gene (rpb2), the partial translation elongation factor 1-alpha gene (tef1α), and the partial beta-tubulin gene (tub2), in conjunction with morphological characteristics, we describe three new species, viz. Pseudoplagiostoma alsophilae sp. nov., P. bambusae sp. nov., and P. machili sp. nov. Molecular clock analyses on the divergence times of Pseudoplagiostomataceae indicated that the conjoint ancestor of Pseudoplagiostomataceae and Apoharknessiaceae occurred in the Cretaceous period. and had a mean stem age of 104.1 Mya (95% HPD of 86.0-129.0 Mya, 1.0 PP), and most species emerged in the Paleogene and Neogene period. Historical biogeography was reconstructed for Pseudoplagiostomataceae by the RASP software with a S-DEC model, and suggested that Asia, specifically Southeast Asia, was probably the ancestral area.

The role of nickel in cadmium accumulation in rice.

Rice is one of the world's staple foods. Cadmium (Cd) levels in paddy soil are still increasing, and "Cd-contaminated rice" is a frequent occurrence, posing a serious threat to human health. Therefore, Cd contamination in rice is a key issue in agricultural production that needs to be addressed urgently. The Cd accumulation in rice is closely related to other elements. In this study, the impact of nickel (Ni) on the uptake and accumulation of Cd in rice was revealed, and the mechanism was discussed. Statistical analysis of field data showed that Cd concentration in rice grains decreased exponentially with increasing Ni concentration in paddy soils, which was verified by the hydroponic experiments. Under 5 µmol/L Cd exposure conditions, the addition of Ni (100 µmol/L) reduced the Cd contents in roots, stems, and leaves by 81.6 %, 60.6 %, and 65.9 %, respectively. With the presence of Ni, the amount of iron plaque decreased, and the Cd content in the iron plaque was reduced due to the competition between Ni and Cd for adsorption sites. In addition, the migration of Cd from stems to leaves was reduced. At the same time, the distribution of Cd in the cell was altered, and the concentration of Cd in the root cell walls increased with increasing Ni addition under 5 µmol/L Cd exposure. These findings highlight the critical role of Ni in inhibiting Cd accumulation in rice, and provide important information for understanding the effects of coexisting elements in Cd-contaminated soils on Cd accumulation in crops.

Morphological and Phylogenetic Analyses Reveal Three New Species of Phyllosticta (Botryosphaeriales, Phyllostictaceae) in China.

The genus Phyllosticta has been reported worldwide and contains many pathogenic and endophytic species isolated from a wide range of plant hosts. A multipoint phylogeny based on gene coding combinatorial data sets for the internal transcribed spacer (ITS), large subunit of ribosomal RNA (LSU rDNA), translation elongation factor 1α (TEF1α), actin (ACT), and glycerol-3-phosphate dehydrogenase (GPDH), combined with morphological characteristics, was performed. We describe three new species, P. fujianensis sp. nov., P. saprophytica sp. nov., and P. turpiniae sp. nov., and annotate and discusse their similarities and differences in morphological relationships and phylogenetic phases with closely related species.

Morphological and Phylogenetic Analyses Reveal Four New Species of Acrodictys (Acrodictyaceae) in China.

During our ongoing survey of dematiaceous hyphomycetes associated with dead branches in tropical forests, eight Acrodictys isolates were collected from Hainan, China. Morphology from the cultures and phylogeny based on partial small subunit (SSU), entire internal transcribed spacer regions with intervening 5.8S (ITS), partial large subunit (LSU) of rRNA gene, partial beta-tubulin (tub2), and partial RNA polymerase II second largest subunit (rpb2) genes were employed to identify these isolates. As a result, four new species, namely Acrodictys bawanglingensis sp. nov., A. diaoluoshanensis sp. nov., A. ellisii sp. nov., and A. pigmentosa sp. nov., are introduced. Illustrations and descriptions of the four taxa are provided, along with comparisons with closely related taxa in the genus. For facilitating relative studies, an updated key to all accepted species of this genus is also compiled.

Morphological and Phylogenetic Analyses Reveal Four New Species of Gnomoniopsis (Gnomoniaceae, Diaporthales) from China.

The fungal genus Gnomoniopsis (Gnomoniaceae, Diaporthales) has been reported all around the world and isolated from multiple plant hosts. Based on multilocus phylogenies from a combined dataset of internal transcribed spacer (ITS) region, the ribosomal RNA gene cluster, and partial regions of translation elongation factor 1 alpha (tef1) and partial beta-tubulin (tub2), in conjunction with morphological characteristics, we describe and illustrate herein four new species, including Gnomoniopsisdiaoluoshanensis sp. Nov., G. lithocarpi sp. Nov., G. mengyinensis sp. Nov. and G.yunnanensis sp. Nov. Alongside this, their similarity and dissimilarity to morphologically-allied and phylogenetically-related species are annotated and discussed. For facilitating future identification, we update the key to all species currently recognized in this genus.

Rotational state specific dissociation dynamics of D2O via the C̃(010) state: The effect of bending vibrational excitation.

The rotational state resolved photodissociation dynamics of D2O via the C̃(010) state has been investigated by using the D-atom Rydberg tagging time-of-flight technique combined with a tunable vacuum ultraviolet light source. The D-atom action spectrum of the C̃(010) ← X̃(000) band and the corresponding time-of-flight (TOF) spectra of D-atom photoproducts formed following the excitation of D2O to individual rotational transition have been measured. By comparison with the action spectrum of the C̃(000) ← X̃(000) band, the bending vibrational constant of the C̃ state for D2O can be determined to be v2 = 1041.37 ± 0.71 cm-1. From the TOF spectra, the product kinetic energy spectra, the vibrational state distributions of OD products, and the state resolved anisotropy parameters have been determined. The experimental results indicate a dramatic variation in the OD product state distributions for different rotational excitations. This illuminates that there are two distinctive coupling channels from the C̃(010) state to the low-lying electronic states: the homogeneous electronic coupling to the Ã1B1 state, resulting in vibrationally hot OD(X) products, and the Coriolis-type coupling to the B̃1A1 state, producing vibrationally cold but rotationally hot OD(X) and OD(A) products. Furthermore, the three-body dissociation channel is confirmed, which is attributed to the C̃ → 1A2 or C̃ → à pathway. In comparison with the previous results of D2O photolysis via the C̃(000) state, it is found that the v2 vibration of the parent molecule enhances both the vibrational and rotational excitations of OD products.

Three New Species of Microdochium (Sordariomycetes, Amphisphaeriales) on Miscanthus sinensis and Phragmites australis from Hainan, China.

Species in Microdochium, potential agents of biocontrol, have often been reported as plant pathogens, occasionally as endophytes and fungicolous fungi. Combining multiple molecular markers (ITS rDNA, LSU rDNA, TUB2 and RPB2) with morphological characteristics, this study proposes three new species in the genus Microdochium represented by seven strains from the plant hosts Miscanthus sinensis and Phragmites australis in Hainan Island, China. These three species, Microdochium miscanthi sp. Nov., M. sinense sp. Nov. and M. hainanense sp. Nov., are described with MycoBank number, etymology, typification, morphological features and illustrations, as well as placement on molecular phylogenetic trees. Their affinity with morphologically allied and molecularly closely related species are also analyzed. For facilitating identification, an updated key to the species of Microdochium is provided herein.

Morphological and phylogenetic analyses reveal two new species of Sporocadaceae from Hainan, China.

Species of Sporocadaceae have often been reported as plant pathogens, endophytes or saprophytes and are commonly isolated from a wide range of plant hosts. The isolated fungi were studied through a complete examination, based on multilocus phylogenies from combined datasets of ITS/tub2/tef1, in conjunction with morphological characteristics. Nine strains were isolated from Ficusmicrocarpa, Ilexchinensis and Schimasuperba in China which represented four species, viz., Monochaetiaschimae sp. nov., Neopestalotiopsishaikouensis sp. nov., Neopestalotiopsispiceana and Pestalotiopsislicualicola. Neopestalotiopsispiceana was a new country record for China and first host record from Ficusmacrocarpa. Pestalotiopsislicualicola was first report from Ilexchinensis in China.

Photodissociation dynamics of CO2 + hv → CO(X1Σ+) + O(1D2) via the 3P1Πu state.

The vacuum ultraviolet (VUV) photodissociation of CO2 is important to understand the primary photochemical processes of CO2 induced by solar VUV excitation in the Earth's atmosphere. Here, we report a detailed study of vibrational-state-specific photodissociation dynamics of the CO(X1Σ+) + O(1D2) channel via the 3P1Πu state by using the time-sliced velocity-mapped ion imaging apparatus combined with the single VUV photoionization detection scheme. By recording the sliced images of the O(1D2) photoproducts formed by VUV photoexcitation of CO2 to the individual vibrational structure of the 3P1Πu state, both the vibrational state distributions of the counterpart CO(X1Σ+) photoproducts and the vibrational-state-specific product anisotropy parameters (ß) are determined. The experimental results show that photodissociation of CO2 at 108.22, 107.50, 106.10, and 104.76 nm yields less anisotropic (ß > 0) and inverted distributed CO(X1Σ+, v) photoproducts. The possible dissociation mechanism for the CO(X1Σ+) + O(1D2) channel may involve the non-adiabatic transition of excited CO2* from the initially prepared state to the 31A' state with potential energy barriers. While at 108.82 and 107.35 nm, the vibrational distributions are found to have the population peaked at a low vibrational state, and the anisotropy parameters turn out to be negative. Such variation indicates the possibility of another non-adiabatic dissociation pathway that may involve Coriolis-type coupling to the low-lying dissociative state. These observations show sclear evidence of the influence of the initially vibrational excitations on the photodissociation dynamics of CO2 via the 3P1Πu state.

Morphological and phylogenetic analyses reveal two new species and a new record of Phyllosticta (Botryosphaeriales, Phyllostictaceae) from Hainan, China.

The fungal genus Phyllosticta has been reported from all around the world and accommodates numerous pathogenic and endophytic species isolated from a wide range of plant hosts. Based on multilocus phylogenies from a combined dataset of genes encoding internal transcribed spacer (ITS), large subunit of ribosomal RNA (LSU rDNA), translation elongation factor 1 alpha (TEF1α), actin (ACT) and glycerol-3-phosphate dehydrogenase (GPDH), in conjunction with morphological characteristics, we describe two new species P.oblongifoliae sp. nov. and P.pterospermi sp. nov., as well as a new Chinese record P.capitalensis. Their similarity and dissimilarity to morphologically-allied and phylogenetically-related species are also annotated and discussed.