Multi-omics analyses reveal MdMYB10 hypermethylation being responsible for a bud sport of apple fruit color.

Apple bud sports offer a rich resource for clonal selection of numerous elite cultivars. The accumulation of somatic mutations as plants develop may potentially impact the emergence of bud sports. Previous studies focused on somatic mutation in the essential genes associated with bud sports. However, the rate and function of genome-wide somatic mutations that accumulate when a bud sport arises remain unclear. In this study, we identified a branch from a 10-year-old tree of the apple cultivar 'Oregon Spur II' as a bud sport. The mutant branch showed reduced red coloration on fruit skin. Using this plant material, we assembled a high-quality haplotype reference genome consisting of 649.61 Mb sequences with a contig N50 value of 2.04 Mb. We then estimated the somatic mutation rate of the apple tree to be 4.56 × 10 -8 per base per year, and further identified 253 somatic single-nucleotide polymorphisms (SNPs), including five non-synonymous SNPs, between the original type and mutant samples. Transcriptome analyses showed that 69 differentially expressed genes between the original type and mutant fruit skin were highly correlated with anthocyanin content. DNA methylation in the promoter of five anthocyanin-associated genes was increased in the mutant compared with the original type as determined using DNA methylation profiling. Among the genetic and epigenetic factors that directly and indirectly influence anthocyanin content in the mutant apple fruit skin, the hypermethylated promoter of MdMYB10 is important. This study indicated that numerous somatic mutations accumulated at the emergence of a bud sport from a genome-wide perspective, some of which contribute to the low coloration of the bud sport.

[Effect and mechanism of moxibustion on oxidative stress injury in rats with Parkinson's disease by activating Nrf2/ARE pathway].

OBJECTIVE: To observe the effect of moxibustion on oxidative stress injury of nigrostriatal system in rats with Parkinson's disease (PD) based on nuclear factor erythroid 2-related factor (Nrf2)/antioxidant response element (ARE) pathway, and to explore its mechanism. METHODS: A total of 48 SD rats were randomized into a blank group, a sham-operation group, a model group and a moxibustion group, 12 rats in each group. Unilateral two-point injection with 6-hydroxydopamine (6-OHDA) was adopted in the model group and the moxibustion group to establish the PD model; the operation manipulation in the sham-operation group was the same as the model group and the moxibustion group, and the same volume of 0.9% sodium chloride solutions was given by unilateral two-point injection. Moxibustion was adopted at "Baihui" (GV 20) and "Sishencong" (EX-HN 1) in the moxibustion group for 20 min, once a day, 6 times a week for 6 weeks. No intervention was given in the other 3 groups. Morphology of right mesencephalon substantia nigra was observed by HE staining, the expression of tyrosine hydroxylase (TH) in right mesencephalon substantia nigra was detected by immunohistochemistry method, the expression of reactive oxygen species (ROS), malondialdehyde (MDA), glutathione (GSH), and glutathione peroxidase (GSH-Px) in corpus striatum was detected by colorimetry method, and the expression of Nrf2 and heme oxygenase-1 (HO-1) proteins was detected by Western blot in the 4 groups. RESULTS: Clear tissue structure and complete dopaminergic neurons of right mesencephalon substantia nigra were observed in the blank group and the sham-operation group; unclear tissue structure, decreased and swelling dopaminergic neurons were observed in the model group; compared with the model group, more neurons were observed and the swelling of cyton was reduced in the moxibustion group. Compared with the sham-operation group, the expression of TH in right mesencephalon substantia nigra was decreased in the model group (P<0.01); compared with the model group, the expression of TH in right mesencephalon substantia nigra was increased in the moxibustion group (P<0.05). Compared with the sham-operation group, the expression of ROS, MDA was increased (P<0.01), the expression of GSH, GSH-Px, Nrf2 and HO-1 was decreased in the model group (P<0.01, P<0.05); compared with the model group, the expression of ROS, MDA was decreased (P<0.05, P<0.01), the expression of GSH, GSH-Px, Nrf2 and HO-1 was increased in the moxibustion group (P<0.05, P<0.01). CONCLUSION: Moxibustion can alleviate oxidative stress injury of nigrostriatal system in rats with Parkinson's disease by activating the Nrf2/ARE pathway, and protect the dopamine neurons.

Transcription Profiles Reveal Sugar and Hormone Signaling Pathways Mediating Flower Induction in Apple (Malus domestica Borkh.).

Flower induction in apple (Malus domestica Borkh.) is regulated by complex gene networks that involve multiple signal pathways to ensure flower bud formation in the next year, but the molecular determinants of apple flower induction are still unknown. In this research, transcriptomic profiles from differentiating buds allowed us to identify genes potentially involved in signaling pathways that mediate the regulatory mechanisms of flower induction. A hypothetical model for this regulatory mechanism was obtained by analysis of the available transcriptomic data, suggesting that sugar-, hormone- and flowering-related genes, as well as those involved in cell-cycle induction, participated in the apple flower induction process. Sugar levels and metabolism-related gene expression profiles revealed that sucrose is the initiation signal in flower induction. Complex hormone regulatory networks involved in cytokinin (CK), abscisic acid (ABA) and gibberellic acid pathways also induce apple flower formation. CK plays a key role in the regulation of cell formation and differentiation, and in affecting flowering-related gene expression levels during these processes. Meanwhile, ABA levels and ABA-related gene expression levels gradually increased, as did those of sugar metabolism-related genes, in developing buds, indicating that ABA signals regulate apple flower induction by participating in the sugar-mediated flowering pathway. Furthermore, changes in sugar and starch deposition levels in buds can be affected by ABA content and the expression of the genes involved in the ABA signaling pathway. Thus, multiple pathways, which are mainly mediated by crosstalk between sugar and hormone signals, regulate the molecular network involved in bud growth and flower induction in apple trees.

[Effects of environmental factors at different altitudes on leaves and fruit quality of Fuji apple].

To inquire the different performances of the leaves and fruit quality of Fuji apple tress at various altitudes and their responses to the environmental factors, indices including leaf morphology, anatomy, δ13 C, and fruit quality of the Fuji apple trees at respective altitudes of 1375 m, 1575 m and 1715 m were investigated and their responses to environmental factors were determined following stepwise regression analysis. The results showed that 6 factors like the warmth index, Bailey's index, photosynthetically active radiation (PAR), coldness index, ultraviolet B and the annual precipitation dominantly affected the characteristic parameters of leaves and fruit. Elevation increase was matched by the decreasing warmth index, rising Bailey' s index, intenser PAR, higher coldness index, stronger ultraviolet B and heavier annual precipitation; meanwhile, the leaf structure and fruit quality parameters also displayed evident trends of change accordingly, namely, leaf parameters like leaf thickness, cuticle thickness, ratio of palisade and spongy, maximum conduit diameter, δ13C and nitrogen content per unit area increased gradually, and oppositely, leaf length-width ratio, specific leaf area, stoma length-width ratio and ratio of upper and lower epidermis to the leaf thickness decreased gradually; similarly, fruit parameters such as fruit shape index, fruit hardness, sugar-acid ratio, total color and the a/b-value ascended while the titratable acid and the hue angle descended. With increasing the altitude, the photosynthetic rate and water use efficiency of leaves were enhanced, and the fruit sugar-acid ratio climbed and the fruit flavor and color improved. Therefore, it could be safely concluded that within the altitude range between 1375 and 1715 m, environmental factors at a higher altitude favored Fuji apple growth.

[Effects of G-protein regulators and stylar S-RNase on the growth and Ca2+ concentration of Pyrus pyrifolia pollen tube].

The effects of G protein regulators and stylar S-RNase on the growth and [Ca(2+)](i) changes of the Pyrus pyrifolia pollen tube were investigated using Laser Confocal Scanning Microscope (LCSM). The results indicated that: (1) The growth of 'Housui' pollen tube could be inhibited by its stylar S-RNase and pertussis toxin (PTX), the inhibitor of heterotrimeric G protein. While 'Kousui' stylar S-RNase had little effect on the growth of 'Housui' pollen tube; cholera toxin (CTX), the activator of heterotrimeric G protein, could promote pollen tube growth and eliminate the suppression of stylar S-RNase on the growth of self-pollen tube, but the growth of 'Housui' pollen tube could be arrested under the co-action of PTX and S-RNase from 'Kousui' Fig.1). (2) Treatments with different stylar S-RNase and G protein regulators could have different effects on the change in [Ca(2+)](i) in the tip of pollen tube (Figs.2,3). The treatment with 'Housui' stylar S-RNase could induce the decrease of fluorescence gradient of [Ca(2+)](i) along the tip of self-pollen tube (Figs.2A, 3A), and the treatment with CTX could markedly elevate [Ca(2+)](i) in the tip of pollen tube showed (Fig.3C). The way of [Ca(2+)](i) changed in 'Housui' pollen tube under the co-action of CTX and its stylar S-RNase showed the compositive effect of the two respective treatment (Fig.3A, C, E), but the effect of the co-action of PTX and 'Kousui' stylar S-RNase showed increase in [Ca(2+)](i) in the pollen tube in 18 min after treatment, and then decrease between 18-36 min (Fig.3F). These results suggest that during self or cross pollination, the control of the growth of Pyrus pyrifolia pollen tube is by the synergistic effect of stylar S-RNase, G protein and [Ca(2+)](i) in the pollen tube.

[The effect of G protein regulator on pollen germination and [Ca2+]i variation in Pyrus serotina Rehd. pollen].

The effects of the cholera toxin (CTX) and pertussis toxin (PTX), which can activate and antagonize respectively the heterotrimeric G protein, on pollen germination, pollen tube growth and the dynamic of cytosolic free calcium concentration ([Ca(2+)]i) in pear pollen were investigated using Laser Confocal Scanning Microscope (LCSM). The results show that CTX could stimulate pollen germination and tube growth while PTX had the opposite effect. CTX and PTX had marked influence on the dynamic of pollen [Ca(2+)]i. The CTX treatment had no significant effect on the changes in pollen [Ca(2+)]i during pollen germination, but induced specific signaling of "calcium transient" in pollen. Treatment with PTX caused decline of pollen [Ca(2+)]i in the first 18 min after treatment. These data suggested that the regulation of pollen germination and tube growth in Pyrus serotina may involve in heterotrimeric G protein, which can stimulate specific change of pollen [Ca(2+)]i.