Charge Transfer and Level Lifetime in Molecular Photon-Absorption upon the Quantum Impedance Lorentz Oscillator.

On the strength of the new quantum impedance Lorentz oscillator (QILO) model, a charge-transfer method in molecular photon-absorption is proposed and imaged via the numerical simulations of 1- and 2-photon-absorption (1PA and 2PA) behaviors of the organic compounds LB3 and M4 in this paper. According to the frequencies at the peaks and the full width at half-maximums (FWHMs) of the linear absorptive spectra of the two compounds, we first calculate the effective quantum numbers before and after the electronic transitions. Thus, we obtain the molecular average dipole moments, i.e., 1.8728 × 10-29 C·m (5.6145 D) for LB3 and 1.9626 × 10-29 C·m (5.8838 D) for M4 in the ground state in the tetrahydrofuran (THF) solvent. Then, the molecular 2PA cross sections corresponding to wavelength are theoretically inferred and figured out by QILO. As a result, the theoretical cross sections turn out to be in good agreement with the experimental ones. Our results reveal such a charge-transfer image in 1PA near wavelength 425 nm, where an atomic electron of LB3 jumps from the ground-state ellipse orbit with the semimajor axis ai = 1.2492 × 10-10m = 1.2492 Å and semiminor axis bi = 0.4363 Å to the excited-state circle (aj = bj = 2.5399 Å). In addition, during its 2PA process, the same transitional electron in the ground state is excited to the elliptic orbit with aj = 2.5399 Å and bj =1.3808 Å, in which the molecular dipole moment reaches as high as 3.4109 × 10-29 C·m (10.2256 D). In addition, we obtain a level-lifetime formula with the microparticle collision idea of thermal motion, which indicates that the level lifetime is proportional (not inverse) to the damping coefficient or FWHM of an absorptive spectrum. The lifetimes of the two compounds at some excited states are calculated and presented. This formula may be used as an experimental method to verify 1PA and 2PA transition selection rules. The QILO model exhibits the advantage of simplifying the calculation complexity and reducing the high cost associated with the first principle in dealing with quantum properties of optoelectronic materials.

The complete chloroplast genome sequence of Clivia robusta.

In this study, we reported the complete chloroplast genome sequence of Clivia robusta for the first time. The complete chloroplast genome of C. robusta was 157,130 bp in length, containing a large single-copy region (LSC, 85,430 bp), a small single-copy region (SSC, 18,278 bp), and two inverted repeat regions (IRs, 26,711 bp). The overall GC content was 38.01%. The chloroplast genome contained 128 genes in total, including 86 protein-coding, 34 tRNA, and eight rRNA genes. The phylogenetic tree showed that C. robusta formed a monophyletic clade with other Clivia species.

The complete chloroplast genome sequence of Clivia miniata var. citrina.

The complete chloroplast genome of Clivia miniata var. citrina was assembled and subjected to phylogenetic analysis in this study. The complete chloroplast genome of C. miniata var. citrina was 158,112 bp in length, containing a large single-copy region (LSC, 86,202 bp), a small single-copy region (SSC, 18,334 bp), and two inverted repeat regions (IRs, 26,788 bp). The GC content was 37.97%. A total of 130 genes were annotated, including 86 protein-coding genes, 36 tRNA and 8 rRNA genes. Phylogenetic analysis showed that C. miniata var. citrina was the most related with C. miniata and they formed a monophyletic group that was sister to the clade of Hippeastrum, Leucojum, Narcissus and Lysoris.

The complete chloroplast genome sequence of Clivia caulescens.

Clivia caulescens is an evergreen herbaceous flower with high ornamental value. In this study, we report its complete chloroplast genome sequence. The whole chloroplast genome was 158,149 bp in length, with a large single copy region (LSC, 86,250 bp), a small single copy region (SSC, 18,343 bp), and two inverted repeat regions (IRs, 26,778 bp). The overall GC content was 37.91%. There were 128 genes annotated, including 86 protein-coding genes, 34 tRNA genes, and eight rRNA genes. The phylogenetic tree showed that C. caulescens formed a monophyletic clade with C. miniata, C. miniata var. aurea, and C. gardenii.

A novel nonsense variant of the AGXT identified in a Chinese family: special variant research in the Chinese reference genome.

BACKGROUND: Primary hyperoxaluria(PH)is a rare autosomal recessive genetic disease that contains three subtypes (PH1, PH2 and PH3). Approximately 80% of PH patients has been reported as subtype PH1, this subtype of PH has been related to a higher risk of renal failure at any age. Several genetic studies indicate that the variants in gene AGXT are responsible for the occurrence of PH1. However, the population heterogeneity of the variants in AGXT makes the genetic diagnosis of PH1 more challenging as it is hard to locate each specific variant. It is valuable to have a complete spectrum of AGXT variants from different population for early diagnosis and clinical treatments of PH1. CASE PRESENTATION: In this study, We performed high-throughput sequencing and genetic analysis of a 6-year-old male PH1 patient from a Chinese family. Two variants (c.346G > A: p.Gly116Arg; c.864G > A: p.Trp288X) of the gene AGXT were identified. We found a nonsense variant (c.864G > A: p.Trp288X) that comes from the proband's mother and has never been reported previously. The other missense variant (c.346G > A: p.Gly116Arg) was inherited from his father and has been found previously in a domain of aminotransferase, which plays an important role in the function of AGT protein. Furthermore, we searched 110 pathogenic variants of AGXT that have been reported worldwide in healthy local Chinese population, none of these pathogenic variants was detected in the local genomes. CONCLUSIONS: Our research provides an important diagnosis basis for PH1 on the genetic level by updating the genotype of PH1 and also develops a better understanding of the variants in AGXT by broadening the variation database of AGXT according to the Chinese reference genome.

Computed Tomography Imaging Study of Basilar Invagination and Atlantoaxial Dislocation.

OBJECTIVE: We sought to analyze axis deformities and the biomechanics related to atlantoaxial dislocation (AAD) in patients with basilar invagination (BI). METHODS: Seventy-six patients were retrospectively analyzed including 21 patients who had BI (group B), 32 patients with BI and AAD (group C), and 23 nondeformity control subjects (group A). Using 3-dimensional computed tomography imaging the distance from the tip of the dens above the Chamberlain line in the sagittal plane, atlantodental interval, sagittal inclination, coronal inclination, and craniocervical tilt, the height of the odontoid and ratio of the height to the odontoid basal width were measured in each patient. We statistically analyzed the resulting data for correlations among physiologic measurements and disease state. RESULTS: The height of the odontoid process in groups A, B, and C was 13.38 ± 1.50 mm, 10.87 ± 1.48 mm, and 8.49 ± 2.49 mm, respectively. The ratio of height-to-basal width of the odontoid in groups A, B, and C was 1.32 ± 0.21, 0.91 ± 0.21, and 0.65 ± 0.17, respectively. The sagittal inclination in groups A, B, and C was 85.85 ± 4.55 degrees, 105.76 ± 10.72 degrees, and 123.48 ±12.43 degrees, and the coronal inclination was 108.95 ± 24.09 degrees, 105.40 ± 25.16 degrees, and 108.82 ± 21.41 degrees, respectively. The craniocervical tilt in groups A, B, and C was 60.31 ± 6.98 degrees, 84.53 ± 18.94 degrees, and 71.79 ± 11.69 degrees, respectively. The height of the odontoid, height-to-basal width, and sagittal inclination were significantly correlated with both BI and AAD (P < 0.001). Odontoid height and height-to-basal width ratio were significantly correlated with BI, AAD, and sagittal inclination (P < 0.001). Finally, craniocervical tilt was correlated only with the BI severity (P < 0.001). CONCLUSION: This study confirms that deformities of the odontoid process and the lateral joint correlate with severity of BI, while deformity of the odontoid process may be a primary factor in AAD for patients with BI.

Identification of genes associated with castration­resistant prostate cancer by gene expression profile analysis.

Prostate cancer (CaP) is a serious and common genital tumor. Generally, men with metastatic CaP can easily develop castration­resistant prostate cancer (CRPC). However, the pathogenesis and tumorigenic pathways of CRPC remain to be elucidated. The present study performed a comprehensive analysis on the gene expression profile of CRPC in order to determine the pathogenesis and tumorigenic of CRPC. The GSE33316 microarray, which consisted of 5 non­castrated samples and 5 castrated samples, was downloaded from the gene expression omnibus database. Subsequently, 201 upregulated and 161 downregulated differentially expressed genes (DEGs) were identified using the limma package in R and those genes were classified and annotated by plugin Mcode of Cytoscape. Gene ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analyses were performed using Database for Annotation, Visualization and Integrated Discovery and KEGG Orthology Based Annotation System 2.0 online tools to investigate the function of different gene modules. The BiNGO tool was used to visualize the level of enriched GO terms. Protein­protein interaction network was constructed using STRING and analyzed with Cytoscape. In conclusion, the present study determined that aldo­keto reductase 3, cyclin B2, regulator of G protein signaling 2, nuclear factor of activated T­cells and protein kinase C a may have important roles in the development of CRPC.

[Identification of Fertilized Chicken Eggs Based on Visible/Near-Infrared Spectrum During Early Stage of Incubation].

In the process of chicken egg hatching, some eggs can not be hatched successfully due to the absence of fertilization. These eggs not only cause a lot of waste, but also infect other normal eggs with bacteria. In the study, the fertilized eggs and clear eggs is identified by using the visible/near-infrared spectrum. It is of great necessity to get the best time of identifying the clear eggs in the early of hatching, so the variation of eggs' quality in the condition of hatching over time is studied. The results show that eggs are fresh after 24 hours' hatching and eggs can not be eaten after 72 hours' hatching while the best time of identification is within 36 hours. Static acquisition system is developed based on visible/near-infrared transmission spectrum for acquiring spectrum. Comparing the effect of the model of the different samples of same breed and samples of different breed, the different part of spectrum among fertilized eggs and clear eggs is deleted which caused by the color of eggshell and yolk, the effective spectral band are 355～590 and 670～1 025 nm. Adopting the pretreatment of PCA and comparing the accuracy of the various mathematical models with different time and the number of principal components decide the best number of principal components. Considering the production efficiency and comparing the different pretreatment methods of spectrum, for examples, SNV, MSC, Derivative correction and PCA, and various mathematical models are combined to establish the most efficient discriminant model. The result shows that the most efficient discriminant model is established with Fisher and based on the pretreatment of PCA after 24 hours' hatching. And the precision rate is 87.18%. The study provides a new way for nondestructive and online identification of the fertilized eggs and clear eggs.

Lentibacillus populi sp. nov., a moderately halophilic, endophytic bacterium isolated from a poplar tree, and emended description of the genus Lentibacillus.

A Gram-staining-positive, moderately halophilic, aerobic, endospore-forming, rod-shaped bacterial strain, designated WD4L-1T was isolated from surface-sterilized stem tissue of a poplar tree planted in the Wudalianchi National Geopark of Heilongjiang province, PR China. This novel isolate grew in the presence of 0-15 % (w/v) NaCl, at pH 6.0-9.0 and 15-50 °C; optimum growth was observed with 7-8 % (w/v) NaCl, at pH 7.0 and 30 °C. The 16S rRNA gene sequence analysis indicated that the strain WD4L-1T belonged to the genus Lentibacillus, and was most closely related to Lentibacillus garicola SL-MJ1T with a sequence similarity of 96.1 %. The DNA G+C content of strain WD4L-1T was determined to be 36.9 mol%. The respiratory quinone was identified as menaquinone-7 (MK-7) and the major lipids were diphosphatidylglycerol and phosphatidylglycerol and one unidentified phospholipid. The major fatty acids of strain WD4L-1T were anteiso-C15 : 0, iso-C15 : 0 and anteiso-C17 : 0. The results of the physiological and biochemical tests and the minor differences in the fatty acid profiles allowed a clear phenotypic differentiation of strain WD4L-1T from the closely related Lentibacillus garicola JCM 30131T. Thus, strain WD4L-1T represents a novel species of the genus Lentibacillus, for which the name Lentibacillus populi sp. nov. is proposed. The type strain is WD4L-1T (=CGMCC 1.15454T=DSM 101738T). An emended description of the genus Lentibacillus is also provided.

Characterization of LpGPAT gene in Lilium pensylvanicum and response to cold stress.

LpGPAT was obtained from L. pensylvanicum using RT-PCR and rapid amplification of cDNA ends. The cloned full-length cDNA was 1544 bp; it encoded 410 amino acids and had a molecular size of 46 KDa. The nucleic acid sequence analysis showed that it shared high homology with other known GPATs. SMAT result suggests that there is a PlsC that exists in 176-322 amino acid sequence of LpGAPT; it means LpGPAT protein is a member of the family of acyltransferase and has acyltransferase enzymatic activity. Result of real-time quantitative PCR and semiquantitative PCR support LpGPAT gene is definitely induced by low temperature stress.

Compound K is able to ameliorate the impaired cognitive function and hippocampal neurogenesis following chemotherapy treatment.

Chemotherapy frequently results in neurocognitive deficits that include impaired learning and memory. Thus, it is important to prevent or ameliorate the persistence of cognitive impairment. Compound K was employed to examine the ameliorating effect on chronic treatment with cyclophosphamide. Eight week-old ICR mice were given 80 mg/kg cyclophosphamide, cyclophosphamide combined with compound K (2.5, 5 and 10 mg/kg) or saline injections once per week for 4 weeks. Passive avoidance test and Y maze were used to evaluate memory and learning ability. Immunohistochemical staining for progenitor cell and immature neurons was used to assess changes in neurogenesis. Compound K (10 mg/kg) is able to ameliorate the decrease of neurogenesis in the hippocampus caused by cyclophosphamide. These results suggest that compound K might be a potential strategy to ameliorate or repair the disrupted hippocampal neurogenesis induced by the side effect of chemotherapy agent.

The antitumor effect of a new docetaxel-loaded microbubble combined with low-frequency ultrasound in vitro: preparation and parameter analysis.

PURPOSE: To develop a novel docetaxel (DOC)-loaded lipid microbubbles (MBs) for achieving target therapy and overcoming the poor water-solubility drawback of DOC. METHODS: A novel DOC-loaded microbubble (DOC + MB) was prepared by lyophilization and the physicochemical properties including ultrasound contrast imaging of the liver were measured. The anti-tumor effect of the DOC + MBs combined with low-frequency ultrasound (LFUS; 0.8 Hz, 2.56 W/cm², 50% cycle duty) on the DLD-1 cancer cell line was examined using an MTT assay. RESULTS: The physicochemical properties of the two tested formats of DOC + MBs (1.0 mg and 1.6 mg) was shown: concentration, (6.74 ± 0.02) × 108 bubbles/mL and (8.27 ± 0.15) × 108 bubbles/mL; mean size, 3.296 ± 0.004 µm and 3.387 ± 0.005 µm; pH value, 6.67 ± 0.11 and 6.56 ± 0.05; release rate, 3.41% and 12.50%; Zeta potential, -37.95 ± 7.84 mV and -44.35 ± 8.70 mV; and encapsulation efficiency, 54.9 ± 6.21% and 46.3 ± 5.69%, respectively. Compared with SonoVue, the DOC + MBs similarly enhanced the echo signal of the liver imaging. The anti-tumor effect of the DOC + MBs/LFUS group was significantly better than that of DOC alone and that of the normal MBs/LFUS groups. CONCLUSIONS: The self-made DOC + MBs have potential as a new ultrasound contrast agent and drug-loaded microbubble, and can obviously enhance the antitumor effect of DOC under LFUS exposure.

Biodegradation of Swainsonine by Acinetobacter calcoaceticus strain YLZZ-1 and its isolation and identification.

Eight swainsonine (SW)-degrading bacteria were isolated from the soil where locoweed was buried for 6 months and one of the strains (YLZZ-1) was selected for further study. Based on morphology, physiologic tests, 16S rRNA gene sequence, and phylogenetic characteristics, the strain showed the greatest similarity to members of the order Acinetobacters and within the order to members of the Acinetobacter calcoaceticus group. The ability of the strain for degrading SW, as sole carbon source, was investigated under different culture conditions. The preferential temperature and initial pH for the strain were 25-35 degrees C and 6-9, respectively. The optimal temperature for the strain was 30 degrees C and the optimal pH was 7.0. There was a positive correlation between degradation rate and inoculation amount. The concentration of SW affected the degradation ability. When the concentration of SW was lower than 100 mg/l, SW decreased immediately after incubation, and when the concentration of SW was 200 mg/l, there was an inhibiting effect for bacteria growth and SW degradation. The strain could degrade SW completely within 14 h when the concentration of SW was 50 mg/l. These results highlight the potential of this bacterium to be used in detoxifying of SW in livestock consuming locoweed.