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PLoS Comput Biol ; 15(8): e1007327, 2019 08.
Article in English | MEDLINE | ID: mdl-31469822

ABSTRACT

Thirteen tubulin protofilaments, made of αß-tubulin heterodimers, interact laterally to produce cytoskeletal microtubules. Microtubules exhibit the striking property of dynamic instability, manifested in their intermittent growth and shrinkage at both ends. This behavior is key to many cellular processes, such as cell division, migration, maintenance of cell shape, etc. Although assembly and disassembly of microtubules is known to be linked to hydrolysis of a guanosine triphosphate molecule in the pocket of ß-tubulin, detailed mechanistic understanding of corresponding conformational changes is still lacking. Here we take advantage of the recent generation of in-microtubule structures of tubulin to examine the properties of protofilaments, which serve as important microtubule assembly and disassembly intermediates. We find that initially straight tubulin protofilaments, relax to similar non-radially curved and slightly twisted conformations. Our analysis further suggests that guanosine triphosphate hydrolysis primarily affects the flexibility and conformation of the inter-dimer interface, without a strong impact on the shape or flexibility of αß-heterodimer. Inter-dimer interfaces are significantly more flexible compared to intra-dimer interfaces. We argue that such a difference in flexibility could be key for distinct stability of the plus and minus microtubule ends. The higher flexibility of the inter-dimer interface may have implications for development of pulling force by curving tubulin protofilaments during microtubule disassembly, a process of major importance for chromosome motions in mitosis.


Subject(s)
Tubulin/chemistry , Biomechanical Phenomena , Computational Biology , Cryoelectron Microscopy , Guanosine Diphosphate/metabolism , Guanosine Triphosphate/metabolism , Hydrolysis , Microtubules/chemistry , Microtubules/metabolism , Microtubules/ultrastructure , Models, Molecular , Molecular Dynamics Simulation , Principal Component Analysis , Protein Conformation , Protein Interaction Domains and Motifs , Protein Multimerization , Protein Stability , Protein Structure, Quaternary , Tubulin/metabolism , Tubulin/ultrastructure
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