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1.
Phys Rev Lett ; 132(17): 173801, 2024 Apr 26.
Article in English | MEDLINE | ID: mdl-38728719

ABSTRACT

Ultrafast imaging can capture the dynamic scenes with a nanosecond and even femtosecond temporal resolution. Complementarily, phase imaging can provide the morphology, refractive index, or thickness information that intensity imaging cannot represent. Therefore, it is important to realize the simultaneous ultrafast intensity and phase imaging for achieving as much information as possible in the detection of ultrafast dynamic scenes. Here, we report a single-shot intensity- and phase-sensitive compressive sensing-based coherent modulation ultrafast imaging technique, shortened as CS-CMUI, which integrates coherent modulation imaging, compressive imaging, and streak imaging. We theoretically demonstrate through numerical simulations that CS-CMUI can obtain both the intensity and phase information of the dynamic scenes with ultrahigh fidelity. Furthermore, we experimentally build a CS-CMUI system and successfully measure the intensity and phase evolution of a multimode Q-switched laser pulse and the dynamical behavior of laser ablation on an indium tin oxide thin film. It is anticipated that CS-CMUI enables a profound comprehension of ultrafast phenomena and promotes the advancement of various practical applications, which will have substantial impact on fundamental and applied sciences.

2.
Article in English | MEDLINE | ID: mdl-38624141

ABSTRACT

Renal cell carcinoma (RCC) is one of the most common malignancies in the urinary system and is not sensitive to chemotherapy or radiotherapy in its advanced stages. Sunitinib is recommended as a first-line target drug for unresectable and metastatic RCC by targeting tyrosine kinase-related signaling pathways, but its therapeutic effect is unsatisfactory. Recently, nanomaterials have shown great prospects in the medical field because of their unique physicochemical properties. Particularly, liposomes are considered as ideal drug delivery systems due to their biodegradability, biocompatibility, and ideal drug-loading efficiency. Considering that tumor supplying artery injection can directly distribute drugs into tumor tissues, in this study, liposomes were employed to encapsulate water-insoluble sunitinib to construct the liposome@sunitinib (Lipo@Suni) complex, so that the drug could directly target and distribute into tumor tissue, and effectively trapped in tumor tissues after tumor supplying artery injection for the advantage of the physicochemical properties of liposomes, thereby achieving a better therapeutic effect on advanced RCC. Here, we found that compared with the peripheral intravenous administration, trans-renal arterial administration increases the content and prolongs the retention time of liposomes in tumor tissues; accordingly, more sunitinib is dispersed and retained in tumor tissues. Ultimately, trans-renal arterial administration of Lipo@Suni exerts a better suppressive effect on RCC progression than peripheral intravenous administration, even better than the conventional oral administration of sunitinib.

3.
BMC Cancer ; 24(1): 452, 2024 Apr 11.
Article in English | MEDLINE | ID: mdl-38605349

ABSTRACT

PURPOSE: Establishment of sister chromatid cohesion N-acetyltransferase 2 (ESCO2) is involved in the mitotic S-phase adhesins acetylation and is responsible for bridging two sister chromatids. However, present ESCO2 cancer research is limited to a few cancers. No systematic pan-cancer analysis has been conducted to investigate its role in diagnosis, prognosis, and effector function. METHODS: We thoroughly examined the ESCO2 carcinogenesis in pan-cancer by combining public databases such as The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression Project (GTEx), UALCAN and Tumor Immune Single-cell Hub (TISCH). The analysis includes differential expression analysis, survival analysis, cellular effector function, gene mutation, single cell analysis, and tumor immune cell infiltration. Furthermore, we confirmed ESCO2's impacts on clear cell renal cell carcinoma (ccRCC) cells' proliferative and invasive capacities in vitro. RESULTS: In our study, 30 of 33 cancer types exhibited considerably greater levels of ESCO2 expression in tumor tissue using TCGA and GTEx databases, whereas acute myeloid leukemia (LAML) exhibited significantly lower levels. Kaplan-Meier survival analyses in adrenocortical carcinoma (ACC), kidney chromophobe (KICH), kidney renal clear cell carcinoma (KIRC), kidney renal papillary cell carcinoma (KIRP), brain lower grade glioma (LGG), liver hepatocellular carcinoma (LIHC), lung adenocarcinoma (LUAD), mesothelioma (MESO), and pancreatic adenocarcinoma (PAAD) demonstrated that tumor patients with high ESCO2 expression have short survival periods. However, in thymoma (THYM), colon adenocarcinoma (COAD) and rectum adenocarcinoma (READ), ESCO2 was a favorable prognostic factor. Moreover, ESCO2 expression positively correlates with tumor stage and tumor size in several cancers, including LIHC, KIRC, KIRP and LUAD. Function analysis revealed that ESCO2 participates in mitosis, cell cycle, DNA damage repair, and other processes. CDK1 was identified as a downstream gene regulated by ESCO2. Furthermore, ESCO2 might also be implicated in immune cell infiltration. Finally, ESCO2'S knockdown significantly inhibited the A498 and T24 cells' proliferation, invasion, and migration. CONCLUSIONS: In conclusion, ESCO2 is a possible pan-cancer biomarker and oncogene that can reliably predict the prognosis of cancer patients. ESCO2 was also implicated in the cell cycle and proliferation regulation. In a nutshell, ESCO2 is a therapeutically viable and dependable target.


Subject(s)
Acetyltransferases , Adenocarcinoma , Chromosomal Proteins, Non-Histone , Colonic Neoplasms , Humans , Adenocarcinoma of Lung , Adrenal Cortex Neoplasms , Carcinoma, Hepatocellular , Carcinoma, Renal Cell/genetics , Kidney Neoplasms , Liver Neoplasms , Lung Neoplasms , Pancreatic Neoplasms , Thymus Neoplasms
4.
Opt Express ; 32(5): 7207-7219, 2024 Feb 26.
Article in English | MEDLINE | ID: mdl-38439408

ABSTRACT

Recent advances in ptychography have extended to anisotropic specimens, but vectorial reconstruction of probes owing to polarization aliasing remains a challenge. A polarization-sensitive ptychography that enables full optical property measurement of vector light is proposed. An optimized reconstruction strategy, first calibrating the propagation direction and then performing faithful retrieval, is established. This method avoids multiple image acquisitions with various polarizer configurations and significantly improves the measurement accuracy by correlating the intensity and position of different polarization components. The capability of the proposed method to quantify anisotropic parameters of optical materials and polarization properties of vector probe is demonstrated by experiment.

5.
Opt Express ; 32(5): 7633-7639, 2024 Feb 26.
Article in English | MEDLINE | ID: mdl-38439440

ABSTRACT

We present an optical parametric chirped-pulse amplification (OPCPA) based on mixed cascaded crystals, taking advantage of the unique parametric phase-matching of lithium triborate (LiB3O5, LBO) and yttrium calcium oxyborate ((YCa4O(BO3)3, YCOB) crystals. The OPCPA properties of LBO at 880 nm and YCOB at 750 nm are studied respectively. After amplification by two LBO and two YCOB crystals, a total signal gain of 108 and spectral bandwidth close to 400 nm is obtained. After accurate dispersion compensation with a grating-pair compressor and chirped mirror compensator, a pulse duration of 9.4 fs is obtained by a SHG-frequency-resolved optical grating (FROG). This approach will be of great significance in high energy amplifier for high peak power few-cycle laser sources.

6.
Article in English | MEDLINE | ID: mdl-38295537

ABSTRACT

Temperature is a limiting factor in the growth of aquatic organisms and can directly affect many chemical and biological processes, including metabolic enzyme activity, aerobic respiration, and signal transduction. In this study, physiological, transcriptomic, and metabolomic analyses were performed to characterize the response of Litopenaeus vannamei to cold stress. We subjected L. vannamei to gradually decreasing temperatures (24 °C, 20 °C, 18 °C, 14 °C, and 12 °C) and studied the changes in the hepatopancreas. The results showed that extreme cold stress (12 °C) caused structural damage to the hepatopancreas of L. vannamei. However, shrimp exhibited response mechanisms to enhance cold tolerance, through regulating changes in key genes and metabolites in amino acid, lipid metabolism, and carbohydrate metabolism, including (a) increased level of methylation in cells to enhance cold tolerance; (b) increased content of critical amino acids, such as proline, alanine, glutamic acid and taurine, to ameliorate energy metabolism, protect cells from cold-induced osmotic imbalance, and promote ion transport and DNA repair; (c) accumulation of unsaturated fatty acids to improve cell membrane fluidity; and (d) regulation of the metabolic pattern shift to rely on anaerobic metabolism with a gradual decrease in aerobic metabolism and enhance glycolysis to produce enough ATP to maintain energy metabolic balance. When the temperature dropped further, cold stress impaired antioxidant and immune defense responses in shrimp. This study provides an integrated analysis of the physiology, transcriptome, and metabolome of L. vannamei in response to cold stress.


Subject(s)
Penaeidae , Transcriptome , Animals , Cold-Shock Response/genetics , Hepatopancreas/metabolism , Gene Expression Profiling , Metabolome , Amino Acids/metabolism , Penaeidae/genetics , Stress, Physiological
7.
Sci Total Environ ; 914: 170046, 2024 Mar 01.
Article in English | MEDLINE | ID: mdl-38218485

ABSTRACT

p-Phenylenediamine antioxidants (PPDs) and PPDs-derived quinones (PPDQs) may pose a threat to the river ecosystem. However, the knowledge on the occurrence and environmental behaviors of PPDs and PPDQs in the natural river environment remains unknown. In this study, we collected paired water (n = 30) and sediment samples (n = 30) from Jiaojiang River, China and analyzed them for nine PPDs and seven PPDQs. Our results showed that target PPDs and PPDQs are frequently detected in water samples, with the dominance of N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine (6PPD; mean 12 ng/L, range 4.0-72 ng/L) and 6PPD-derived quinone (6PPDQ; 7.0 ng/L,

8.
Sci Total Environ ; 912: 169196, 2024 Feb 20.
Article in English | MEDLINE | ID: mdl-38097075

ABSTRACT

The safety of drinking water has always been a concern for people all over the world. N-nitrosamines (NAs), a kind of nitrogenous disinfection by-products (N-DBPs), are generally detected as a mixture in drinking water at home and abroad. Studies have shown that individual NAs posed strong carcinogenicity at high concentrations. However, health risks of NAs at environmental levels (concentrations in drinking water) are still unclear. Therefore, the potential health risks of environmentally relevant NAs exposure in drinking water needs to be conducted. In this study, blood biochemical analysis and metabolomics based on nuclear magnetic resonance (NMR) were performed to comprehensively investigate NAs induced metabolic disturbance in infant rats at environmental levels. Results of blood biochemical indices analysis indicated that AST in the serum of male rats in NAs-treated group exhibited a significant gender-specific difference. Multivariate statistics showed that two and eight significantly disturbed metabolic pathways were identified in the serum samples of NAs-treated male and female rats, respectively. In the urine samples of NAs-treated female rats, glycine, serine, and threonine metabolism pathway was significantly disturbed; while three significantly disturbed metabolic pathways were found in the urine of NAs-treated male rats. Finally, results of spearman correlation coefficients suggested that the disturbances of metabolism profile in serum and urine were correlated with changes in the gut microbiota (data derived from our published paper). Data presented here aimed to generate new health risk data of NAs mixture exposure at environmental levels and provide theoretical support for drinking water safety management. ENVIRONMENTAL IMPLICATION: N-nitrosamines (NAs) are a kind of nitrogenous disinfection by-products (N-DBPs) generated during drinking water disinfection processes. Herein, health risks of NAs at environmental levels (concentrations in drinking water) are investigated using blood biochemical analysis and nuclear magnetic resonance (NMR)-based metabolomics. Results confirmed NAs induced gender-specific on the metabolism in rat and the disturbances of metabolism profile in serum and urine were correlated with changes in the gut microbiota. Data presented here aimed to generate new health risk data of NAs mixture exposure at environmental levels and provide theoretical support for drinking water safety management.


Subject(s)
Disinfectants , Drinking Water , Nitrosamines , Water Pollutants, Chemical , Water Purification , Humans , Infant , Rats , Male , Female , Animals , Nitrosamines/toxicity , Nitrosamines/analysis , Drinking Water/chemistry , Water Purification/methods , Disinfection/methods , Magnetic Resonance Spectroscopy , Water Pollutants, Chemical/analysis , Disinfectants/analysis
9.
Sci Total Environ ; 912: 169325, 2024 Feb 20.
Article in English | MEDLINE | ID: mdl-38101633

ABSTRACT

The p-phenylenediamine antioxidants (PPDs) have been widely detected in various dust samples. Nevertheless, the knowledge on occurrence of their environmental transformation products, PPD-derived quinones (PPDQs), in indoor dust remains limited. In this study, indoor dust samples (n = 97) were collected from Hangzhou, China, and analyzed for PPDs and PPDQs. Results showed that nine PPDs were detected in indoor dust samples, with the total concentrations of 1.7-223 ng/g. N-(1,3-dimethylbutyl)-N'-phenyl-p-phenylenediamine (6PPD, mean 17 ng/g) was the predominant PPDs in indoor dust, followed by N, N'-di(o-tolyl)-p-phenylenediamine (DTPD, 8.6 ng/g) and N-(1,3-dimethylbutyl)-N'-(p-tolyl)-p-phenylenediamine (DMTPD, 4.7 ng/g). Five PPDQs were detected in indoor dust samples. Among detected PPDQs, 6PPDQ (14 ng/g, 0.33-82 ng/g) had the highest mean concentration, followed by DTPDQ (5.9 ng/g, < LOD-31 ng/g) and DPPDQ (2.2 ng/g, < LOD-11 ng/g). We also estimated the daily intake (DI) of PPDs and PPDQs through indoor dust ingestion. Infants had higher mean DIs of PPDs and PPDQs than children and adults. Notably, to our knowledge, this study first reports the occurrence of three novel PPDs and four novel PPDQs in indoor dust samples. More studies are needed to reveal the potential human health risks of exposure to these newly identified chemicals.


Subject(s)
Air Pollutants , Air Pollution, Indoor , Phenylenediamines , Infant , Adult , Child , Humans , Environmental Exposure/analysis , Antioxidants , Air Pollutants/analysis , Quinones , Dust/analysis , Air Pollution, Indoor/analysis , China
10.
J Nanobiotechnology ; 21(1): 487, 2023 Dec 18.
Article in English | MEDLINE | ID: mdl-38105187

ABSTRACT

Stem cell (SC) therapy has been shown high prospects in erectile dysfunction (ED) treatment. Without ethical issues and risks of immune rejection and tumorigenesis of exogenous SC therapy, endogenous stem/progenitor cells (S/PCs) have a better potential for ED management, and their homing and redistribution are controlled by SDF1-α/CXCR4 axis. Considering black phosphorus nanosheet (BPNS) has emerged as an efficient and safe drug vehicle due to its large surface area, biodegradability, and the ability to retain and slowly release its loaded drugs, BPNS is utilized to load SDF1-α, a chemokine for S/PCs, to construct the BP@SDF1-α complex to efficiently recruit stem cells (SCs) by injury-site injection and thus ameliorate ED within the bilateral cavernous nerve injury (BCNI) rat models. We find that BP@SDF1-α can efficiently recruit exogenous SCs and endogenous S/PCs to corpus cavernosum and main pelvic ganglion (MPG) by local administration. Of note, ascribing to endogenous S/PCs recruitment, it also successfully alleviates ED in BCNI rat models by enhancing the protein expression levels of α-SMA, CD31, and nNOs, and eliciting less collagen deposition in the penis after its combined injection at corpus cavernosum and MPG. Thus, this study provides a new insight into the treatment of ED with endogenous S/PCs. BIODEGRADABLE NANO BLACK PHOSPHORUS BASED SDF1-α DELIVERY SYSTEM AMELIORATES ERECTILE DYSFUNCTION IN A CAVERNOUS NERVE INJURY RAT MODEL BY RECRUITING ENDOGENOUS STEM/PROGENITOR CELLS.


Subject(s)
Erectile Dysfunction , Male , Humans , Animals , Erectile Dysfunction/drug therapy , Erectile Dysfunction/metabolism , Stem Cell Transplantation , Penis/injuries , Penis/innervation , Collagen , Disease Models, Animal
11.
Appl Opt ; 62(35): 9291-9298, 2023 Dec 10.
Article in English | MEDLINE | ID: mdl-38108700

ABSTRACT

The stability of beam pointing in a laser system depends on the consistency of the optical mirror mount. Typically, a locking mechanism is used to secure the adjustment mechanism after beam alignment, ensuring the mount's stability. However, this process can introduce errors, causing a drift in the optical path. To mitigate this issue, in this study, an interference fit adjustment screw was designed. This development enables the mechanism to self-lock after beam alignment, thereby preventing optical path drift and enhancing overall stability. Specifically, 14 long-term thermal shock stability tests, each lasting 2500 min, were conducted to validate the proposed design. The experimental results showed that the thermal drift of the interference fit adjustment screw was reduced by 47.16%, thermal shift was reduced by 79.59%, and the long-term stability improved by at least 48.67%.

12.
Opt Express ; 31(21): 35143-35155, 2023 Oct 09.
Article in English | MEDLINE | ID: mdl-37859252

ABSTRACT

By writing diffracted intensities as a set of linear equations with the self-correlation of sample's Fourier components as unknown terms and the self-correlation of illumination's Fourier components as coefficients, it was found that the number of unknown terms to be determined is much larger in partially coherent PIE than that in purely coherent PIE. When a partially coherent illumination composed of N modes was applied a unique reconstruction can be determined by scanning the sample to at least 4N positions and recording 4N frames of diffraction patterns. While mathematically illustrating the physical mechanism of multimode ptychography and numerically demonstrating its capability in generating unique reconstruction under partially coherent illumination, this study showed for the first time that multimode ptychography could be an analytic imaging method.

13.
Opt Express ; 31(17): 28161-28173, 2023 Aug 14.
Article in English | MEDLINE | ID: mdl-37710877

ABSTRACT

We propose a three-wavelength elliptically polarized light photoelasticity method for high efficiency and low-cost stress measurement. By illuminating the sample with two different forms of elliptically polarized light for each wavelength sources, twelve images are acquired. From these images, phase delay and the principal internal stress difference are precisely computed using developed algorithms. Our proposed method based on an LCD panel has the unrivalled advantage that elliptically polarized light can be automatically adjusted, which reduces the mechanical rotation of the system, in contrast to the traditional six-step phase-shifting photoelasticity method, which requires manual rotation for circularly polarized light. In addition, the system has the potential to theoretically expand the area of illumination infinitely, thereby expanding the measurement area. The viability of the suggested methods is confirmed with numerical simulation and stress measurement.

14.
Opt Lett ; 48(16): 4276-4279, 2023 Aug 15.
Article in English | MEDLINE | ID: mdl-37582011

ABSTRACT

Diffractive lenses are popular in large optical systems owing to their lightweight and multifunctional design. However, they are difficult to calibrate accurately due to the cross talk between the first-order diffraction and the background light. Here, a quadriwave lateral shearing interferometry (QWLSI) with spherical wave illumination was proposed to absolutely measure the focusing properties of diffractive lenses by means of the reference background light, in which the corresponding theoretical modeling was first derived, and then the single-shot experiment on a 210 mm-diameter beam was carried out. The results showed that the measurement error of the focal length was 0.59%, and the consistency error was 0.008%.

15.
Sci Total Environ ; 888: 164197, 2023 Aug 25.
Article in English | MEDLINE | ID: mdl-37201808

ABSTRACT

Despite studies have proposed that microplastics (MPs) could exert adverse effects on terrestrial ecosystems and biota, the occurrence of MPs in wild terrestrial insects has been rarely investigated. This study examined MPs in 261 long-horned beetle (Coleoptera: Cerambycidae) samples collected from four different Chinese cities. Detection frequency of MPs in long-horned beetles from different cities was 68-88 %. Long-horned beetles from Hangzhou (4.0 items/individual) had the highest mean abundance of MPs, followed by that from Wuhan (2.9 items/individual), Kunming (2.5 items/individual), and Chengdu (2.3 items/individual). The mean size of MPs in long-horned beetles from four Chinese cities was 381-690 µm. Fiber consistently represented the major shape of MPs in long-horned beetles from different Chinese cities, contributing 60, 54, 50, and 49 % of total items of MPs in Kunming, Chengdu, Hangzhou, and Wuhan, respectively. Polypropylene was the major polymer composition of MPs in long-horned beetles from Chengdu (68 % of total items of MPs) and Kunming (40 %). However, polyethylene and polyester were the major types of polymer compositions of MPs in long-horned beetles from Wuhan (39 % of total MP items) and Hangzhou (56 %), respectively. To our knowledge, this is the first study investigating the occurrence of MPs in wild terrestrial insects. These data are important for evaluating the risks of exposure to MPs for long-horned beetles.


Subject(s)
Coleoptera , Water Pollutants, Chemical , Animals , Microplastics , Plastics , Ecosystem , Water Pollutants, Chemical/analysis , Environmental Monitoring , China
16.
Environ Pollut ; 330: 121817, 2023 Aug 01.
Article in English | MEDLINE | ID: mdl-37182579

ABSTRACT

Along with the increasing production and application of graphene oxide (GO), its environmental health and safety (EHS) risks have become a global concern. Numerous studies have investigated the biosafety and toxicity mechanisms associated with GO, however, the majority of previous studies were based on its direct toxic dose, which could not reflect the realistic state of environmental exposure of GO with an indirect toxic dose (low dose). Meanwhile, the effects of low-dose GO on the progression of tumors are still unclearly. Herein, we found that GO can promote multiple types of tumor cell proliferation under its low-dose treatment. Moreover, the lateral size of GO has no obvious distinction on its promoting effect on tumor proliferation. The mechanistic investigation revealed that low-dose GO treatment increased the expression level of integrin αV protein, a cell membrane receptor, and further lead to the constitutively activated PI3K/AKT/mTOR signaling pathway and promoted mitotic progression. Collectively, these findings increased our understanding of the detrimental effects of GO in promoting tumor proliferation, as well as improved our biosafety assessment at its realistic exposure doses.


Subject(s)
Phosphatidylinositol 3-Kinases , Proto-Oncogene Proteins c-akt , Proto-Oncogene Proteins c-akt/metabolism , Phosphatidylinositol 3-Kinases/metabolism , Integrin alphaV/metabolism , Integrin alphaV/pharmacology , Signal Transduction , TOR Serine-Threonine Kinases/metabolism , Cell Proliferation , Apoptosis , Cell Line, Tumor
17.
J Transl Med ; 21(1): 281, 2023 04 26.
Article in English | MEDLINE | ID: mdl-37101292

ABSTRACT

BACKGROUND: The primary cilia (PC) is a microtubule-based and nonmotile organelle which protrudes from the surface of almost all mammalian cells. At present, PC has been found to be a deficiency or loss in multiple cancers. Restoring PC could be a novel targeting therapy strategy. Our research showed that PC was reduced in human bladder cancer (BLCA) cells, and PC deficiency promotes cell proliferation. However, the concrete mechanisms remain unknown. SCL/TAL1 interrupting locus (STIL), a PC-related protein, was screened in our previous study and could influence the cell cycle by regulating PC in tumor cells. In this study, we aimed to elucidate the function of STIL for PC to explore the underlying mechanism of PC in BLCA. METHODS: Public database analysis, western blot, and enzyme-linked immunosorbent assay (ELISA) were used to screen genes and explore gene expression alteration. Immunofluorescence and western blot were utilized to investigate PC. Wound healing assay, clone formation assay, and CCK-8 assay were used to explore cell migration, growth, and proliferation. The co-immunoprecipitation and western blot were employed to reveal the interaction of STIL and AURKA. RESULTS: We found that high STIL expression is correlated with poor outcomes of BLCA patients. Further analysis revealed that STIL overexpression could inhibit PC formation, activate SHH signaling pathways, and promote cell proliferation. In contrast, STIL-knockdown could promote PC formation, inactivate SHH signaling, and inhibit cell proliferation. Furthermore, we found that the regulatory functions of STIL for PC depend on AURKA. STIL could influence proteasome activity and maintain AURKA stabilization. AURKA-knockdown could reverse PC deficiency caused by STIL overexpression for PC in BLCA cells. We observed that co-knockdown in STIL and AURKA significantly enhanced PC assembly. CONCLUSION: In summary, our result provides a potential therapy target for BLCA based on the restoration of PC.


Subject(s)
Aurora Kinase A , Urinary Bladder Neoplasms , Animals , Humans , Aurora Kinase A/genetics , Intracellular Signaling Peptides and Proteins/metabolism , Cilia/metabolism , Cell Proliferation/genetics , Urinary Bladder Neoplasms/genetics , Cell Line, Tumor , Mammals
18.
BMC Microbiol ; 23(1): 120, 2023 04 29.
Article in English | MEDLINE | ID: mdl-37120526

ABSTRACT

BACKGROUND: Metschnikowia bicuspidata is a pathogenic yesst that can cause disease in many different economic aquatic animal species. In recent years, there was a new disease outbreak in ridgetail white prawn (Exopalaemon carinicauda) in coastal areas of Jiangsu Province China that was referred to as zombie disease by local farmers. The pathogen was first isolated and identified as M. bicuspidata. Although the pathogenicity and pathogenesis of this pathogen in other animals have been reported in some previous studies, research on its molecular mechanisms is still very limited. Therefore, a genome-wide study is necessary to better understand the physiological and pathogenic mechanisms of M. bicuspidata. RESULT: In this study, we obtained a pathogenic strain, MQ2101, of M. bicuspidata from diseased E. carinicauda and sequenced its whole genome. The size of the whole genome was 15.98 Mb, and it was assembled into 5 scaffolds. The genome contained 3934 coding genes, among which 3899 genes with biological functions were annotated in multiple underlying databases. In KOG database, 2627 genes were annotated, which were categorized into 25 classes including general function prediction only, posttranslational modification, protein turnover, chaperones, and signal transduction mechanisms. In KEGG database, 2493 genes were annotated, which were categorized into five classes, including cellular processes, environmental information processing, genetic information processing, metabolism and organismal systems. In GO database, 2893 genes were annotated, which were mainly classified in cell, cell part, cellular processes and metabolic processes. There were 1055 genes annotated in the PHI database, accounting for 26.81% of the total genome, among which 5 genes were directly related to pathogenicity (identity ≥ 50%), including hsp90, PacC, and PHO84. There were also some genes related to the activity of the yeast itself that could be targeted by antiyeast drugs. Analysis based on the DFVF database showed that strain MQ2101 contained 235 potential virulence genes. BLAST searches in the CAZy database showed that strain MQ2101 may have a more complex carbohydrate metabolism system than other yeasts of the same family. In addition, two gene clusters and 168 putative secretory proteins were predicted in strain MQ2101, and functional analysis showed that some of the secretory proteins may be directly involved in the pathogenesis of the strain. Gene family analysis with five other yeasts revealed that strain MQ2101 has 245 unique gene families, including 274 genes involved in pathogenicity that could serve as potential targets. CONCLUSION: Genome-wide analysis elucidated the pathogenicity-associated genes of M. bicuspidate while also revealing a complex metabolic mechanism and providing putative targets of action for the development of antiyeast drugs for this pathogen. The obtained whole-genome sequencing data provide an important theoretical basis for transcriptomic, proteomic and metabolic studies of M. bicuspidata and lay a foundation for defining its specific mechanism of host infestation.


Subject(s)
Genome-Wide Association Study , Proteomics , Animals , Base Sequence , Gene Expression Profiling , Phylogeny
19.
Environ Sci Pollut Res Int ; 30(22): 61741-61752, 2023 May.
Article in English | MEDLINE | ID: mdl-36934189

ABSTRACT

Alternate wetting and drying irrigation (AWD) can reduce non-point source pollution from paddy fields by mitigating field water depth. However, the influence of compounding modes of polymer-coated urea (PCU) and conventional urea (CU) on nitrogen (N) loss via runoff and leaching from paddy fields under AWD conditions remains unclear. To address this question, in this study, a 2-year field experiment was set up with three N management treatments: (a) 100% CU (N1), (b) 60% PCU + 40% CU (N2), and (c) 100% PCU (N3), at an equivalent N rate of 240 kg ha-1 that was applied to traditional continuously flooded (CI) and AWD systems. The results of this experiment showed a high-risk period of N loss from the paddy fields within 7 d after basal fertilization and 5 days after tillering fertilization. AWD reduced irrigation frequencies by 3.5 times and total input of irrigation water by 38.1%, increasing water utilization from precipitation by 44.4% than CI and reducing the volume of runoff by 46.1% and leaching water by 22.1%. This reduced the total N (TN) loss through runoff and leaching under AWD. In the N2 and N3 treatment groups, N concentration in floodwater decreased from 33.8 to 24.9%, TN loss via runoff decreased by 35.3 to 25.0%, and leaching decreased by 41.7 to 30.3% from the paddy field compared to N1. With the same N mode, AWD showed a higher N uptake (from jointing to maturity stage) and rice yield compared to CI. Besides, N2 and N3 had higher N uptake compared to N1 under the two irrigation regimes. Moreover, the AWDN3 and AWDN2 treatments resulted in the lowest and second-lowest loss of TN via runoff (2.21 to 2.66 kg ha-1) and leaching (8.14 and 10.21 kg ha-1), respectively, from the paddy fields and had the relatively high N uptake in rice in the maturity stage. Remarkably, compared with N3, N2 had a comparable grain yield under CI; however, it showed a higher yield under AWD, suggesting that there is a positive interaction in the rice yield between the AWD and compounding N (PCU + CU) fertilization practice. Thus, AWD coupled with N2 could be recommended as a useful approach to reduce N loss via runoff and leaching from paddy fields, which could increase the grain yield of middle-season rice.


Subject(s)
Agriculture , Oryza , Agriculture/methods , Delayed-Action Preparations , Urea , Nitrogen/analysis , Fertilizers/analysis , Water/analysis , Soil , Agricultural Irrigation/methods
20.
Ecol Evol ; 13(1): e9702, 2023 Jan.
Article in English | MEDLINE | ID: mdl-36620412

ABSTRACT

Hubei Shishou Milu National Nature Reserve is an ideal place to restore the wild population of Père David's deer (Elaphurus davidianus). Understanding foraging ecology and diet composition is essential for assessing population development or establishing long-term effective conservation measures for endangered species. However, little is known about the diet composition of Père David's deer and its diet selection mechanism. In this study, we used stable isotope technology to investigate the diet composition of Père David's deer according to various tissues (i.e., fur, muscle, liver, heart, and feces) and seasons, and evaluated the correlation between the nutrient composition of plants and diet composition. Bayesian isotope analysis showed that the autumn and winter diet estimated by fur and fecal samples indicated a diet dominated by C3 grasses (42.7%-57.2%, mean), while the summer diet estimated by muscle and liver samples was dominated by C3 forbs (30.9%-41.6%, mean). The Pearson correlation test indicated that the contribution of winter diet composition reflected by fur and fecal samples was associated with correlations with crude protein (r = .666, p < .01) and soluble sugars (r = .695, p < .01). The results indicated that crude protein and soluble sugars were important factors influencing the winter diet selection of Père David's deer. In the context of the current reintroduction facing many challenges, such as habitat fragmentation, wetland degradation, and human disturbance, comprehensively evaluating the diet selection mechanism of Père David's deer under different resource specificities and temporal changes should be considered in the future.

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