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1.
Sci China Life Sci ; 65(12): 2472-2490, 2022 12.
Article in English | MEDLINE | ID: mdl-35802303

ABSTRACT

The soybean E1 gene is a major regulator that plays an important role in flowering time and maturity. However, it remains unclear how cultivars carrying the dominant E1 allele adapt to the higher latitudinal areas of northern China. We mapped the novel quantitative trait locus QNE1 (QTL near E1) for flowering time to the region proximal to E1 on chromosome 6 in two mapping populations. Positional cloning revealed Glyma.06G204300, encoding a TCP-type transcription factor, as a strong candidate gene for QNE1. Association analysis further confirmed that functional single nucleotide polymorphisms (SNPs) at nucleotides 686 and 1,063 in the coding region of Glyma.06G204300 were significantly associated with flowering time. The protein encoded by the candidate gene is localized primarily to the nucleus. Furthermore, soybean and Brassica napus plants overexpressing Glyma.06G204300 exhibited early flowering. We conclude that despite their similar effects on flowering time, QNE1 and E4 may control flowering time through different regulatory mechanisms, based on expression studies and weighted gene co-expression network analysis of flowering time-related genes. Deciphering the molecular basis of QNE1 control of flowering time enriches our knowledge of flowering gene networks in soybean and will facilitate breeding soybean cultivars with broader latitudinal adaptation.


Subject(s)
Flowers , Glycine max , Glycine max/genetics , Flowers/genetics , Photoperiod , Plant Breeding , Quantitative Trait Loci/genetics
2.
Plant Cell ; 32(2): 374-391, 2020 02.
Article in English | MEDLINE | ID: mdl-31826964

ABSTRACT

The nuclear pore complex profoundly affects the timing of flowering; however, the underlying mechanisms are poorly understood. Here, we report that Nucleoporin96 (Nup96) acts as a negative regulator of long-day photoperiodic flowering in Arabidopsis (Arabidopsis thaliana). Through multiple approaches, we identified the E3 ubiquitin ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 (HOS1) and demonstrated its interaction in vivo with Nup96. Nup96 and HOS1 mainly localize and interact on the nuclear membrane. Loss of function of Nup96 leads to destruction of HOS1 proteins without a change in their mRNA abundance, which results in overaccumulation of the key activator of long-day photoperiodic flowering, CONSTANS (CO) proteins, as previously reported in hos1 mutants. Unexpectedly, mutation of HOS1 strikingly diminishes Nup96 protein level, suggesting that Nup96 and HOS1 are mutually stabilized and thus form a novel repressive module that regulates CO protein turnover. Therefore, the nup96 and hos1 single and nup96 hos1 double mutants have highly similar early-flowering phenotypes and overlapping transcriptome changes. Together, this study reveals a repression mechanism in which the Nup96-HOS1 repressive module gates the level of CO proteins and thereby prevents precocious flowering in long-day conditions.


Subject(s)
Arabidopsis Proteins/metabolism , Arabidopsis/metabolism , Flowers/metabolism , Intracellular Signaling Peptides and Proteins/metabolism , Nuclear Pore Complex Proteins/metabolism , Nuclear Proteins/metabolism , Photoperiod , Arabidopsis/genetics , Arabidopsis Proteins/genetics , DNA-Binding Proteins/metabolism , Flowers/genetics , Gene Expression Regulation, Plant , Intracellular Signaling Peptides and Proteins/genetics , Mutation , Nuclear Envelope , Nuclear Pore Complex Proteins/genetics , Nuclear Proteins/genetics , Transcription Factors/metabolism , Transcriptome , Ubiquitin-Protein Ligases
3.
Opt Express ; 24(20): 22413-22422, 2016 Oct 03.
Article in English | MEDLINE | ID: mdl-27828313

ABSTRACT

In this paper, we propose a cost-effective wavelength-reused mode-division-multiplexing (MDM) system for high speed symmetrical bidirectional mobile fronthaul application. At the base band unit (BBU) pool, one of the spatial modes is used to transmit signal carrier while the others are used for downstream (DS) signal channels. At the remote radio unit (RRU) side, the signal carrier is split and reused as modulation carrier for all the upstream (US) signal channels after mode demultiplexing. Thanks to the low mode crosstalk characteristic of the mode multiplexer/demultiplexer (MUX/DEMUX) and few-mode fiber (FMF), the signal carrier and each signal channel can be effectively separated. The spectral efficiency (SE) is significantly enhanced when multiple spatial channels are used. Compared with other wavelength reused scheme in which the downstream and upstream be modulated in orthogonal dimension, the modulation format of both directions are independent in the proposed wavelength reused MDM system. Therefore, it can easily achieve symmetrical bidirectional transmission without residual re-modulation crosstalk. The proposed scheme is scalable to multi-wavelength application when wavelength MUX/DEMUX is utilized. With the proposed scheme, we demonstrate a proof of concept intensity modulated 4 × 25-Gb/s 16-QAM orthogonal frequency division multiplexing (OFDM) transmission over 10-km FMF using low modal-crosstalk two-mode FMF and MUX/DEMUX with error free operation. The downstream receiver sensitivity is -21 dBm while the upstream receiver sensitivity is -18 dBm for bidirectional transmission. Due to the Rayleigh backscattering and other spurious reflections, the upstream suffers 2 dB power penalty compared with unidirectional transmission without downstream. To mitigate bidirectional transmission impairments, we propose a simple and effective method to suppress Rayleigh backscattering by shifting the downstream subcarrier frequency. A receiver sensitivity improvement of up to 2.5 dB is achieved for upstream with different downstream power.

4.
Phys Rev E ; 94(4-1): 043321, 2016 Oct.
Article in English | MEDLINE | ID: mdl-27841657

ABSTRACT

Adaptive molecular resolution approaches in molecular dynamics are becoming relevant tools for the analysis of molecular liquids characterized by the interplay of different physical scales. The essential difference among these methods is in the way the change of molecular resolution is made in a buffer (transition) region. In particular a central question concerns the possibility of the existence of a global Hamiltonian which, by describing the change of resolution, is at the same time physically consistent, mathematically well defined, and numerically accurate. In this paper we present an asymptotic analysis of the adaptive process complemented by numerical results and show that under certain mathematical conditions a Hamiltonian, which is physically consistent and numerically accurate, may exist. Such conditions show that molecular simulations in the current computational implementation require systems of large size, and thus a Hamiltonian approach such as the one proposed, at this stage, would not be practical from the numerical point of view. However, the Hamiltonian proposed provides the basis for a simplification and generalization of the numerical implementation of adaptive resolution algorithms to other molecular dynamics codes.

5.
J Chem Phys ; 140(1): 014502, 2014 Jan 07.
Article in English | MEDLINE | ID: mdl-24410228

ABSTRACT

We prove that according to Molecular Dynamics (MD) simulations of liquid mixtures of Lennard-Jones (L-J) particles, there is no third order phase transition in the supercritical regime beyond Andrew's critical point. This result is in open contrast with recent theoretical studies and experiments which instead suggest not only its existence but also its universality regarding the chemical nature of the fluid. We argue that our results are solid enough to go beyond the limitations of MD and the generic character of L-J models, thus suggesting a rather smooth liquid-vapor thermodynamic behavior of fluids in supercritical regime.

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