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1.
Plants (Basel) ; 13(10)2024 May 14.
Article in English | MEDLINE | ID: mdl-38794424

ABSTRACT

Salvia castanea Diels, a relative of the medicinal plant Salvia miltiorrhiza Bunge, belongs to the genus Salvia and family Lamiaceae. Ubiquitin-conjugating enzyme E2 (UBC) is an important ubiquitin-binding enzyme in protein ubiquitination. This study aimed to analyze the regulatory role of UBC genes, particularly ScUBC2/5, on the growth and adaptation of S. castanea to extreme environments including cold or drought stress. We identified nine UBC genes in S. castanea and found that these genes were extremely stable and more highly expressed in the roots than other tissues. This suggested that UBC genes might play a role in promoting root adaptation to cold and dry environments. Further analysis of UBC gene expression in hairy roots under cold (4 °C) and UV stress also confirmed their importance under stress. The contents of tanshinone and salvianolic acid in hairy roots with the overexpression of ScUBC2/5 were increased compared to non-transgenic wild type, and the cold and UV resistance of hairy roots was increased compared with that of wild type. Together, these findings highlighted the role of ScUBC2/5 in enhancing secondary metabolite accumulation and regulation in response to cold and ultraviolet stress in S. castanea, providing a new perspective for genetic improvement in its phytochemistry.

2.
Plant Physiol Biochem ; 211: 108671, 2024 Jun.
Article in English | MEDLINE | ID: mdl-38703500

ABSTRACT

Salvia castanea Diels, a close wild relative to the medicinal plant, Salvia miltiorrhiza Bunge, primarily grows in high-altitude regions. While the two species share similar active compounds, their content varies significantly. WRKY transcription factors are key proteins, which regulate plant growth, stress response, and secondary metabolism. We identified 46 ScWRKY genes in S. castanea and found that ScWRKY35 was a highly expressed gene associated with secondary metabolites accumulation. This study aimed to explore the role of ScWRKY35 gene in regulating the accumulation of secondary metabolites and its response to UV and cadmium (Cd) exposure in S. miltiorrhiza. It was found that transgenic S. miltiorrhiza hairy roots overexpressing ScWRKY35 displayed upregulated expression of genes related to phenolic acid synthesis, resulting in increased salvianolic acid B (SAB) and rosmarinic acid (RA) contents. Conversely, tanshinone pathway gene expression decreased, leading to lower tanshinone levels. Further, overexpression of ScWRKY35 upregulated Cd transport protein HMA3 in root tissues inducing Cd sequestration. In contrast, the Cd uptake gene NRAMP1 was downregulated, reducing Cd absorption. In response to UV radiation, ScWRKY35 overexpression led to an increase in the accumulation of phenolic acid and tanshinone contents, including upregulation of genes associated with salicylic acid (SA) and jasmonic acid (JA) synthesis. Altogether, these findings highlight the role of ScWRKY35 in enhancing secondary metabolites accumulation, as well as in Cd and UV stress modulation in S. miltiorrhiza, which offers a novel insight into its phytochemistry and provides a new option for the genetic improvement of the plants.


Subject(s)
Cadmium , Depsides , Gene Expression Regulation, Plant , Plant Proteins , Salvia miltiorrhiza , Salvia miltiorrhiza/genetics , Salvia miltiorrhiza/metabolism , Plant Proteins/genetics , Plant Proteins/metabolism , Cadmium/metabolism , Depsides/metabolism , Secondary Metabolism/genetics , Stress, Physiological/genetics , Transcription Factors/genetics , Transcription Factors/metabolism , Benzofurans/metabolism , Rosmarinic Acid , Cinnamates/metabolism , Plants, Genetically Modified/metabolism , Plants, Genetically Modified/genetics , Ultraviolet Rays , Plant Roots/metabolism , Plant Roots/genetics , Abietanes/metabolism , Abietanes/biosynthesis , Hydroxybenzoates/metabolism
3.
Anal Chem ; 2024 Feb 09.
Article in English | MEDLINE | ID: mdl-38335519

ABSTRACT

The nonphotodriven electrochemiluminescence (ECL) imageology necessitates concentrated coreacting additives plus longtime exposures. Seeking biosafe and streamlined ensembles can help lower the bar for quality ECL bioimaging to which call the crystallized endo-coreaction in nanoreticula might provide a potent solution. Herein, an exo-coreactant-free ECL visualizer was fabricated out in one-pot, which densified the dyad triethylamine analogue: 1,4-diazabicyclo-[2.2.2]octane (DABCO) in the lamellar hive of 9,10-di(p-carboxyphenyl)anthracene (DPA)-Zn2+. This biligated non-noble metal-organic framework (m-MOF) facilitated a self-contained anodic ECL with a yield as much as 70% of Ru(bPy)32+ in blank phosphate buffered saline. Its featured two-stage emissions rendered an efficient and endurant CCD imaging at 1.0 V under mere 0.5 s swift snapshots and 0.1 s step-pulsed stimulation. Upon structural and spectral cause analyses as well as parametric set optimization, simplistic ECL-graphic immunoassay was mounted in the in situ imager to enact an ultrasensitive measurement of coronaviral N-protein in both signal-on and off modes by the privilege of straight surface amidation on m-MOFs, resulting in a wide dynamic range (10-4-10 ng/mL), a competent detection limit down to 56 fg/mL, along with nice precision and parallelism in human saliva tests. The overall work manifests a rudimentary endeavor in self-sufficient ECL visuality for brisk, biocompatible, and brilliant production of point-of-care diagnostic "Big Data".

4.
Anal Chem ; 95(50): 18564-18571, 2023 12 19.
Article in English | MEDLINE | ID: mdl-38060825

ABSTRACT

The precision additive manufacturing and tessellated multitasking out of the structural DNA nanotechnology enable a configurable expression of densified electrochemiluminescent (ECL) complexes, which would streamline the bioconjugation while multiplying signals. Herein, a completely DNA-scaffold ECL "polyploid" was replicated out via the living course of rolling circle amplification. The amplicon carried the aptameric sequences of ZnPPIX/TSPP porphyrin as photoreactive centers that rallied at periodical intervals of the persistent extension into a close-packed nanoflower, ZnPDFI/II. Both microscopies and electrophoresis proved the robust nesting of guests at their deployed gene loci, while multispectral comparisons among cofactor substituents pinpointed the pivotal roles of singlet seclusion and Zn2+-chelation for the sake of intensive ECL irradiation. The adversity-resilient hydrogel texture made lipoidal filmogens as porphyrinic ECL prerequisites to be of no need at all, thus not only simplifying assay flows but also inspiring an in situ labeling plan. Upon bioprocessing optimization, an enriched probe ZnPDFIII was further derived that interpolated the binding motif related to calprotectin as validated by molecular docking and affinity titration. With it being a strongly indicative marker of inflammatory bowel disease (IBD), a competitive ECL aptasensing strategy was contrived, managing a signal-on and sensitive detection in mild conditions with a subnanogram-per-milliliter limit of detection by 2 orders of magnitude lower than the standard method as well as a comparable accuracy in clinical stool sample testing. Distinct from those conventional chemophysical rebuilding routes, this de novo biosynthetic fusion demonstrated a promising alternative toward ECL-source bioengineering, which may intrigue vibrant explorations of other ECL-shedding fabrics and, accordingly, a new bioanalytic mode downstream.


Subject(s)
Aptamers, Nucleotide , Biosensing Techniques , Limit of Detection , Molecular Docking Simulation , Luminescent Measurements/methods , DNA , Aptamers, Nucleotide/chemistry , Biosensing Techniques/methods , Electrochemical Techniques/methods
5.
Anal Chem ; 95(39): 14797-14804, 2023 10 03.
Article in English | MEDLINE | ID: mdl-37737115

ABSTRACT

Given the lack of timely evaluation of the well-received selenium fortification, a neat lateral-flow chromatographic solution was constructed here by using the recently identified urinary selenosugar (Sel) as a strongly indicative marker. As there are no ready-made receptors for this synthetic standard, phenylboronic acid (PBA) esterification and Dolichos biflorus agglutinin (DBA) affinity joined up to pinch and pin down the analyte into a sandwich-type glycol complex. Pilot lectin screening on homemade glycan microarrays verified such a new pairing between dual recognizers as PBA-Sel-DBA with a firm monosaccharide-binding constant. To quell the sample autofluorescence, europium nanoparticles with efficient long-life afterglow were employed as conjugating probes under 1 µs excitation. After systematic process optimizations, the prepared Sel-dipstick achieved swift and sensitive fluorometry over the physiological level of the target from 0.1 to 10 µM with a detection limit down to 0.06 µM. Further efforts were made to eliminate matrix effects from both temperature and pH via an approximate formula. Upon completion, the test strips managed to quantify the presence of Sel in not just imitated but real human urine, with comparable results to those in the references. As far as we know, this would be the first in-house prototype for user-friendly and facile diagnosis of Se nutrition with fair accuracy as well as selectivity. Future endeavors will be invested to model a more traceable Se-supplementary plan based on the rhythmic feedback of Sel excretion.


Subject(s)
Metal Nanoparticles , Selenium , Humans , Europium , Point-of-Care Systems , Chromatography
6.
Chem Sci ; 14(30): 8084-8094, 2023 Aug 02.
Article in English | MEDLINE | ID: mdl-37538820

ABSTRACT

DNA nanodevices have been feasibly applied for various chemo-biological applications, but their functions as precise regulators of intracellular organelles are still limited. Here, we report a synthetic DNA binder that can artificially induce mitochondrial aggregation and fusion in living cells. The rationally designed DNA binder consists of a long DNA chain, which is grafted with multiple mitochondria-targeting modules. Our results indicated that the DNA binder-induced in situ self-assembly of mitochondria can be used to successfully repair ROS-stressed neuron cells. Meanwhile, this DNA binder design is highly programmable. Customized molecular switches can be easily implanted to further achieve stimuli-triggered mitochondrial aggregation and fusion inside living cells. We believe this new type of DNA regulator system will become a powerful chemo-biological tool for subcellular manipulation and precision therapy.

7.
J Hazard Mater ; 459: 132081, 2023 Oct 05.
Article in English | MEDLINE | ID: mdl-37473574

ABSTRACT

Covalent organic frameworks (COFs) have become a promising candidate for the remediation of heavy metal pollution. However, researches on COF adsorbents still have challenges on maintaining good optical properties and adsorption performance under harsh conditions. Herein, a fully π-conjugated COF with dual binding sites (Bpy-sp2c-COF) is reported for rapid fluorescence recognition and enhanced adsorption towards divalent heavy metal ions. The vinylene-linkage lattice shows strong luminescence and excellent stability in both strong acidity and basicity. Bpy-sp2c-COF demonstrates not only nanomolar-scale detection of divalent heavy metal ions, but also good adsorption capacity (Hg2+ 718.48, Ni2+ 278.64, Cu2+ 260.11, and Co2+ 126.23 mg/g). Experimental and theoretical studies reveal the intramolecular charge transfer as the fluorescence quenching mechanism. Further simulation results demonstrate the cyano and bipyridine groups on the lattice can act as dual binding sites for divalent heavy metal ions. Experimental results confirmed the adsorption capacity of Bpy-sp2c-COF superior to that of COFs with either cyano groups (Hg2+ 415.34, Ni2+ 165.60, Cu2+ 160.55, and Co2+ 73.14 mg/g), or bipyridine groups (Hg2+ 369.25, Ni2+ 133.41, Cu2+ 133.32, and Co2+ 69.23 mg/g). Besides, robust regeneration of the adsorbent could be achieved over 10 cycles. The fully π-conjugated COF with dual binding sites provides a new approach for designing next-generation sensors and adsorbents with excellent performances.

8.
Anal Chim Acta ; 1239: 340659, 2023 Jan 25.
Article in English | MEDLINE | ID: mdl-36628752

ABSTRACT

The structural characteristics of electrochemiluminescent (ECL) microreticula enabled flexible designs for probing specific molecules. However, bioanalysts paid little attention to the impact of concomitant electrolytic carriers on ECL responsiveness of these grids. Our previous finding confirmed the collisional quenching of ECL radiative secondary building units from polarized Br- and I-. To further address this concern, herein typical cationic commonplaces including Na+, K+, Ca2+, … in buffer plus regular transition metals - their influences upon the ECL performance of a well-defined zinc porphyrin-organic framework (ZnPOF) were inspected in a one-by-one manner. Except for Na+/K+, a dozen of divalent metal chlorides exerted an adverse effect in the form of Stern-Volmer quenching on the ECL brightness, which was illuminated to be cation channeling in open voids of ZnPOFs and bonding with O2-reactive sites as exemplified by the model Ca2+ via systematic compositional investigation. Following this principle, a simplistic Ca2+-sensitive sensor was developed for quantitative evaluation of health-care calcium supplements with high precision. Above all, this work highlighted the non-negligible interference from those Mn + requisites to the susceptible MOF-based ECL, which should be paid extra attention in bioassays and mechanistic analyses.


Subject(s)
Biosensing Techniques , Metal-Organic Frameworks , Metal-Organic Frameworks/chemistry , Cations, Divalent , Luminescent Measurements , Photometry , Biological Assay , Electrochemical Techniques
9.
J Mater Chem B ; 11(2): 261-279, 2023 01 04.
Article in English | MEDLINE | ID: mdl-36524395

ABSTRACT

Nucleic acid nanotechnology is a powerful tool in the fields of biosensing and nanomedicine owing to their high editability and easy synthesis and modification. Artificial nucleic acid nanostructures have become an emerging research hotspot as gene carriers with low cytotoxicity and immunogenicity for therapeutic approaches. In this review, recent progress in the design and functional mechanisms of nucleic acid-based artificial nano-vectors especially for exogenous siRNA and antisense oligonucleotide delivery is summarized. Different types of DNA nanocarriers, including DNA junctions, tetrahedrons, origami, hydrogels and scaffolds, are introduced. The enhanced targeting strategies to improve the delivery efficacy are demonstrated. Furthermore, RNA based gene nanocarrier systems by self-assembly of short strands, rolling circle transcription, chemical crosslinking and using RNA motifs and DNA-RNA hybrids are demonstrated. Finally, the outlook and potential challenges are highlighted. The nucleic acid-based artificial nanocarriers offer a promising and precise tool for gene delivery and therapy.


Subject(s)
Nucleic Acids , DNA/genetics , DNA/chemistry , Nanotechnology , RNA, Small Interfering , Genetic Therapy
10.
Chem Sci ; 13(47): 14106-14113, 2022 Dec 07.
Article in English | MEDLINE | ID: mdl-36540820

ABSTRACT

Recent studies have shown that enzymes undergo chemotaxis up substrate gradients during catalysis. One important avenue to identify the molecular level origins of this phenomenon is the ligand-protein binding that occurs even in the absence of catalytic turnover. Here, the chemotaxis of zinc porphyrin as a cofactor mimic was observed by imposing a concentration gradient of organic amines in the microfluidic device. Their axial ligations led to the directed motions of porphyrin receptors. The dissociation constant for selected recognition could be obtained by measuring the chemotactic shift as a function of ligand content, which is associated with both the binding strength and the steric hindrance of the specific ligand. Finally, a statistical thermodynamic model was derived, relating the change of Gibbs free energy (ΔG) in the binding process to the directional migration of receptors. The theoretical model agreed quantitatively with experimental results, elucidating that ΔG of reversible binding essentially drives molecular chemotaxis.

11.
Langmuir ; 38(49): 15316-15326, 2022 12 13.
Article in English | MEDLINE | ID: mdl-36441978

ABSTRACT

Being synthetic supplements to natural lipids, lipoids now play an increasingly significant role in nanopore sequencing, olfactory sensing, and nanoimpact electrochemistry. Yet, systematic comparisons to sort and screen qualified lipoids are lacking for specific scenario applications. Here, taking the merits of electrochemiluminescence (ECL) in probing biointerfacial events, a new metric was proposed for the evaluation of substrate candidacy in the pool of hyamine bromides (ABs), that are used to cohere with electron-rich porphyrins for deep eutectics-like ECL matrices. Using a state-of-the-art framework emitter, the cocrystalline nanosheet of C70 and zinc meso-tetraphenylporphine (ZnTPP) via simple liquid-liquid interfacial deposition, 6 out of 20 ABs were inspected and identified as not only amenable filmogens but excitonic sensitizers in key terms of ECL strength as well as voltammetric characteristics. Among them, the methyltrioctyl (MTOAB) headgroup stood out; while the ECL activity at ZnTPP-C70@MTOAB was proven to be dictated by ionophoresis across multilamellar lipoidal layers. Thus, target-induced membrane deformation would let coreactant scavengers in to quench ECL, which enabled assays on two less visited bioprocesses regarding (1) the lipid solubility of ipratropium bromide, an aerosol medication for rhinitis treatment; and (2) the resorption of selenosugar as the central metabolite of Se-proteins on kidney glomerular basement barrier. Both resulted in nice membrane-binding measurements with comparable dissociation constants to reported microfluidic ELISA methods. By and large, though still being rudimentary, such parametrization of ECL-able biofilm would set up a basic ECL toolbox for archiving and resourcing multilipoidal even lipid-lipoid combos to handle the realistic (sub)cytomembrane processes in the future.


Subject(s)
Ammonium Compounds , Biosensing Techniques , Luminescent Measurements/methods , Electrochemistry/methods , Lipids , Biosensing Techniques/methods , Electrochemical Techniques/methods
12.
Anal Chem ; 94(9): 3744-3748, 2022 03 08.
Article in English | MEDLINE | ID: mdl-35213129

ABSTRACT

Nitrogen-rich heterocyclic compounds (NRHCs) are an emerging type of explosive, and their quantification is important in national security inspection and environmental monitoring. Up until now, designing an efficient NRHCs sensing strategy was still in the early stages. Herein, a new metal-organic framework (MOF) with aggregation-induced emission (AIE) characteristics is synthesized with fluorometric/colorimetric responses for rapid and selective detection of NRHCs. The nonemissive probe is designed with tetraphenylethylene derivative as the linker and Co as the node, quencher, and color-changing agent. Cobalt AIE-MOF exhibits a turn-on emission enhancement due to the competitive coordination substitution between NRHCs and the scaffold as well as the following AIE process of the liberative linkers. Meanwhile, the color appearance of the probe changes from blue to yellow based on the dissociation of the original Co coordinating system. Using this dual-mode probe, single- and dual-ring NRHCs are successfully detected from 5 µM to 7.5 mM within 25 s. The cobalt AIE-MOF exhibits excellent selectivity of NRHCs against a variety of interferences, providing a promising tool for designing a multichannel detection strategy.


Subject(s)
Heterocyclic Compounds , Metal-Organic Frameworks , Cobalt , Colorimetry , Nitrogen
13.
Anal Chem ; 94(4): 2154-2162, 2022 02 01.
Article in English | MEDLINE | ID: mdl-35041791

ABSTRACT

Recent upgrades in the electrochemiluminescence (ECL) technique showcased its brilliant knack in probing microscopic biointerfacial events, many of which were actually underlain by the ionotropic membrane processes, yet not being ostensive. Here, by modeling an artificial lipoid-supported porin ensemble, we explore and establish the ECL potency in profiling ion-channel activities. A lipophilic hollowed construct dubbed ZnPC was made out of the dynamic covalent chemistry, and its unique geometry was characterized that configured stoichiometric ECL-emissive units in a cubic stance; while the aliphatic vertices of ZnPC helped it safely snorkel and steadily irradiate in a biofilm fusion. After expounding basic ECL properties, the brightness was traced out in response to halogen contents that was lit up by F-/Cl- but down by Br-/I-. The overall pattern fitted the Langmuir isotherm, from which the membrane-binding strengths of the four were analyzed, compared, and collaterally examined in impedimetrics. On the other hand, one could derive anionic transmembrane kinetics from the time-dependent ECL statistics that pinpointed the ECL signaling via the nanocage-directed mass-transfer pathway. More data mining unveiled an ECL-featured Hofmeister series and the thermodynamic governing force behind all scenes. Finally, combining with halide-selective fluorometry, the synthetic conduit was identified as an ECL symporter. In short, this work develops a novel ECL model for the evaluation of life-mimicking membrane permeation. It might intrigue the outreach of ECL applications in the measurement of diverse surface-confined transient scenarios, e.g., in vitro gated ion or molecule trafficking, which used to be handled by nanopore and electrofluorochromic assays.


Subject(s)
Electrochemical Techniques , Luminescent Measurements , Electrochemical Techniques/methods , Luminescent Measurements/methods , Photometry
14.
Anal Chem ; 92(22): 15137-15144, 2020 11 17.
Article in English | MEDLINE | ID: mdl-33119272

ABSTRACT

Pluripotency of a DNA tetrahedron (DNATT) has made the iconic framework a compelling keystone in biosensors and biodevices. Herein, distinct from the well-tapped applications in substrate fabrication, we focus on exploring their tracing and signaling potentials. A homologous family of four isostructural DNATT, i.e., DNATTα/ß/γ/δ, was engineered to form a sensor circuitry, in which a target-specific monolayer of thiolated DNATTγ pinned down the analyte jointly with the reciprocal DNATTδ into a sandwich complex; the latter further rallied an in situ interdigital relay of biotinylated DNATTα/ß into a microsized hyperlink dubbed polyDNATT. Its scale and growth factors were illuminated rudimentarily in transmission electron microscopy and confocal laser scanning microscopy. Using a nonsmall-cell lung cancer-related microRNA (hsa-miR-193a-3p) as the subject, a compound DNA-backboned construct was synthesized, fusing all building blocks together. Its superb tacticity and stereochemical conformality avail the templating of a horseradish peroxidase train, which boosted the paralleled catalytic surge of proton donors, resulting in an attomolar detection limit and a broad calibration range of more than seven orders of magnitude. Such oligomerization bested the conventional hybridization chain reaction laddering at both biomechanical stability and stoichiometric congruency. More significantly, it demonstrates the flexibility of DNA architectures and their multitasking ability in biosensing.


Subject(s)
Biosensing Techniques/methods , DNA/chemistry , MicroRNAs/analysis , Cell Line, Tumor , Electrochemistry , Humans , Limit of Detection , MicroRNAs/chemistry , Nanostructures/chemistry , Nucleic Acid Hybridization
15.
Anal Chem ; 92(20): 14076-14084, 2020 10 20.
Article in English | MEDLINE | ID: mdl-32938180

ABSTRACT

Being announced as one of the "2019 Top Ten Emerging Technologies in Chemistry" by IUPAC, the directed evolution of artificial metalloenzymes has led to a broad scope of abiotic processes. Here, inspired by those key proteins in bioluminescence, a rudimentary expression of bio-electrochemiluminescent (ECL) macromolecules was achieved via the complexation of zinc proto-porphyrin IX (ZnPPIX) within apo-hemoglobin (apo-Hb). A high-yield monochromic irradiation at 644 nm could be provoked potentiostatically from the reconstituted holo-HbZnPPIX in solutions. Its secondary structure integrity was elucidated by UV and circular dichroism spectrometry, while voltammetry-hyphenated surface plasmon resonance authenticated its ligation conservativeness in electrical fields. Further conjugation with streptavidin rendered a homogeneous Janus fusion of both receptor and reporter domains, enabling a new abiological catalyst-linked ECL bioassay. On the other hand, singular ZnPPIX inside each tetrameric subunit of Hb accomplished an overall signal amplification without the bother of luminogenic heterojunctions. This pH-tolerant and non-photobleaching optics was essentialized to be the unique configuration interaction between Zn and O2, by which the direct electrochemistry of proteins catalyzed the transient progression of O2 → O2·- → O2* + hυ selectively. Such principle was implemented as a signal-on strategy for the determination of a characteristic cancer biomarker, the vascular endothelial growth factor, resulting in competent performance at a low detection limit of 0.6 pg·mL-1 and a wide calibration range along with good stability and reliability in real practices. This simple mutation repurposed the O2-transport Hb in the erythrocytes of almost all vertebrates into a cluster of oxidoreductases with intrinsic ECL activity, which would enrich the chromophore library. More importantly, its genetically engineered variants may come in handy in biomedical diagnosis and visual electrophysiology.


Subject(s)
Hemoglobins/chemistry , Metalloporphyrins/chemistry , Vascular Endothelial Growth Factor A/analysis , Biosensing Techniques , Electrochemical Techniques , Electrochemistry , Humans , Hydrogen-Ion Concentration , Immunoassay , Limit of Detection , Luminescent Measurements , Oxygen/chemistry , Photobleaching , Reproducibility of Results , Sensitivity and Specificity , Streptavidin/chemistry , Surface Plasmon Resonance
16.
Anal Chem ; 92(7): 4726-4730, 2020 04 07.
Article in English | MEDLINE | ID: mdl-32167303

ABSTRACT

In this work, a cleancap-regulated aggregation-induced emission (AIE) strategy based on copper nanoclusters (CuNCs) was developed with stepwise recognition for highly specific analysis of the enzyme. The dissolved CuNCs with AIE characteristics in alkaline solution were prepared by using p-mercaptophenylboronic acid as the reducing agent and the stabilizing ligand. The prepared CuNCs can specifically conjugate with glucose (Glu) to connect with each other via the rapid boronate esters formation between boronic acids of CuNCs and a pair of cis-diols on Glu. The cleancap-regulated AIE strategy was further identified by modification of CuNCs with d-glucose 6-phosphate (P-Glu) as the capper and substrate. Introduction of alkaline phosphatase to the P-Glu/CuNCs complex can induce the cleavage of phosphate group to activate the 5,6-diol of Glu on the CuNCs. The decapped complexes could be aggregated through further conjugation between 5,6-diol and boronic acid of two CuNCs, resulting in strong red AIE luminescence. The dual recognitions of enzymatic cleavage and cis-diols/boronic acid conjugation endow the designed method with highly specific detection and cell imaging of enzymatic activity. The cleancap-regulated AIE strategy provides a universal tool for regulation of AIE phenomenon in trace analysis.


Subject(s)
Alkaline Phosphatase/analysis , Alkaline Phosphatase/metabolism , Copper/chemistry , HCT116 Cells , Hep G2 Cells , Humans , Metal Nanoparticles/chemistry , Microscopy, Confocal , Molecular Structure , Optical Imaging , Protein Aggregates
17.
Anal Chim Acta ; 1094: 130-135, 2020 Jan 15.
Article in English | MEDLINE | ID: mdl-31761039

ABSTRACT

Quantification of plasma membrane proteins (PMPs) is crucial for understanding the fundamentals of cellular signaling systems and their related diseases. In this work, a super-quadruplex scaffold was designed to regulate assembly of oligonucleotide-grafted AIEgens for detection of PMPs. The nonfluorescence oligonucleotide-grafted AIEgen (Oligo-AIEgen) was firstly synthesized by attaching the AIEgen to 3'-terminus of the oligonucleotide through click chemistry. Meanwhile, the tetramolecular hairpin-conjugated super-quadruplex (THP-G4) as cleavage element and signal enhancement scaffold composited of three elements: a substrate sequence of DNAzyme in the loop region, partial hybridization region in the stem, and six guanine nucleotides to form G-quadruplex. Once the DNAzyme was anchored on the specific PMPs through aptamer-protein recognition, the substrate sequence on the loop of THP-G4 was cleaved by DNAzyme with the aid of cofactor MnII, resulting in the conformation switch of THP-G4 to the activated G-quadruplex scaffold. The latter could assemble Oligo-AIEgens to generate aggregation-induced emission (AIE) enhancement, resulting in a simple and sensitive strategy for detection of membrane proteins. Moreover, the DNAzyme continuously cut the next THP-G4 to achieve recycling amplification. Under the optimized conditions, this AIE-based strategy exhibited good linear relationship with the logarithm of MUC1 concentration from 0.01 to 10 µg mL-1 with the limit of detection down to 4.3 ng mL-1. The G4-assembled AIEgens provides a universal platform for detecting various biomolecules and a proof-of concept for AIE biosensing.


Subject(s)
Acrylonitrile/analogs & derivatives , Biosensing Techniques/methods , Fluorescent Dyes/chemistry , G-Quadruplexes , Mucin-1/analysis , Stilbenes/chemistry , Acrylonitrile/chemical synthesis , Aptamers, Nucleotide/chemistry , Aptamers, Nucleotide/genetics , Cell Line, Tumor , DNA, Catalytic/chemistry , DNA, Catalytic/genetics , Fluorescent Dyes/chemical synthesis , Humans , Limit of Detection , Mucin-1/chemistry , Nucleic Acid Hybridization , Oligodeoxyribonucleotides/chemistry , Oligodeoxyribonucleotides/genetics , Proof of Concept Study , Stilbenes/chemical synthesis
18.
Biosens Bioelectron ; 138: 111313, 2019 Aug 01.
Article in English | MEDLINE | ID: mdl-31108380

ABSTRACT

A ratiometric electrochemical biosensor was constructed to detect telomerase activity based on electrocatalysis of cerium-based metal-organic frameworks (CeMOFs) and conformation switch of hairpin DNA. First, the CeMOFs were synthesized using Ce as nodes and 1,3,5-benzenetricarboxylic acid as linker in a green method, and then functionalized with gold nanoparticles. The resulted Au@CeMOF tags demonstrated an excellent electrocatalysis toward hydroquinone oxidation. Meanwhile, a methylene blue (MB) modified hairpin probe was designed with telomerase primer (TP) hybridized "stem" and immobilized on the electrode surface via Au-S chemistry. In the presence of the dNTPs and telomerase, the extended TP can open the hairpin DNA and keep the MB away from the electrode surface, resulting in a decrease of electrochemical signal. In the meantime, the TP-extended part could capture the Au@CeMOF-cDNA tags on the electrode surface via hybridization, leading to the increase electrochemical signal of hydroquinone oxidation catalyzed by Au@CeMOF-cDNA tags. Thus, a ratiometric signal output mode was developed for the electrochemical detection of telomerase activity. This biosensor showed wide dynamic correlation of telomerase activity from 2 × 102 to 2 × 106 cells mL-1 with the limit of detection of 27 cells mL-1, and was applied to evaluate telomerase activity in single cell. The ratiometric electrochemical strategy based on the catalysis of MOFs provides a new avenue on signal transduction in telomerase detection.


Subject(s)
Cerium/chemistry , Gold/chemistry , Metal Nanoparticles/chemistry , Metal-Organic Frameworks/chemistry , Telomerase/analysis , Biosensing Techniques/instrumentation , Biosensing Techniques/methods , Catalysis , DNA/chemistry , Electrochemical Techniques , Electrodes , HeLa Cells , Humans , Hydroquinones/chemistry , Limit of Detection , Methylene Blue/chemistry , Nucleic Acid Conformation , Oxidation-Reduction , Telomerase/metabolism
19.
Anal Chem ; 91(11): 6981-6985, 2019 06 04.
Article in English | MEDLINE | ID: mdl-31099242

ABSTRACT

Different from conventional DNA walkers, we designed a telomerase-triggered three-dimensional DNA walker consisting of a superhairpin structure with a bulged loop in the stem as the walking strand and dye-labeled tracks for ultrasensitive detection of telomerase activity. In the presence of telomerase, the primers in the stem of the superhairpin structure were elongated and triggered internal strand displacement, thus activating the superhairpin structure. Subsequently, the open superhairpin structure as a swing arm was able to bind with the track, and the swing arm could be released by enzymatic cleavage of the binding duplex domain, resulting in the fluorescence recovery of dye-labeled fragments from the surface of gold nanoparticles. Based on signal amplification of the telomerase-triggered DNA walker, the walking device was further applied to various cancer lines with a low detection limit of telomerase activity equivalent to 90 cells µL-1 for HeLa cells. Moreover, the advantage of this DNA walker strategy was confirmed by calculating telomerase activity in a single cell. This telomerase-triggered DNA walker provides a new concept on signal transduction for telomerase detection and is anticipated to stimulate interest in DNA nanomachine design for bioanalysis.


Subject(s)
DNA/chemistry , Metal Nanoparticles/chemistry , Telomerase/metabolism , Carbocyanines/chemistry , DNA/metabolism , Fluorescent Dyes/chemistry , Gold/chemistry , Hep G2 Cells , Humans , Limit of Detection , MCF-7 Cells , Nucleic Acid Conformation , Single-Cell Analysis/methods , Spectrophotometry, Ultraviolet , Telomerase/analysis
20.
Chemistry ; 25(18): 4665-4669, 2019 Mar 27.
Article in English | MEDLINE | ID: mdl-30748042

ABSTRACT

Distinguishing glutathione (GSH) level in different subcellular locations is critical for studying its antioxidant function in the signaling system. However, traditional methods for imaging subcellular GSH were achieved in isolated organelles or fixed cells. In this work, we report a quencher-delocalized emission strategy for in situ profiling of GSH at different subcellular locations in living cells. A nonemissive metal-organic framework (MOF) nanoprobe was designed with AIEgen as the linker and CuII as the node and quencher. The AIEgen in MOF structure was lightened up with green emission in a neutral environment due to partial CuII delocalization by competitive binding to GSH. Meanwhile, along with the protonation of AIEgen ligand under acidic environment, the AIEgen-based MOF could be completely dissociated in the presence of GSH to yield yellow emission. The two-channel ratiometric analysis of dual-colored emission of AIEgen-based MOF allows visualization of GSH in cytoplasm and lysosome in living cells, which is also able to report the drug effects on different subcellular GSH levels.


Subject(s)
Biosensing Techniques , Fluorescent Dyes/chemistry , Glutathione/analysis , Metal-Organic Frameworks/chemistry , Binding, Competitive , Color , Copper/chemistry , Copper/metabolism , Cytoplasm/chemistry , Fluorescence , Glutathione/metabolism , Hep G2 Cells , Humans , Light , Lysosomes/chemistry , Nanostructures
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