Body size: A hidden trait of the organisms that influences the distribution of antibiotic resistance genes in soil.

Body size is a key life-history trait of organisms, which has important ecological functions. However, the relationship between soil antibiotic resistance gene (ARG) distribution and organisms' body size has not been systematically reported so far. Herein, the impact of organic fertilizer on the soil ARGs and organisms (bacteria, fungi, and nematode) at the aggregate level was analyzed. The results showed that the smaller the soil aggregate size, the greater the abundance of ARGs, and the larger the body size of bacteria and nematodes. Further analysis revealed significant positive correlations of ARG abundance with the body sizes of bacteria, fungi, and nematodes, respectively. Additionally, the structural equation model demonstrated that changes in soil fertility mainly regulate the ARG abundance by affecting bacterial body size. The random forest model revealed that total phosphorus was the primary soil fertility factor influencing the body size of organisms. Therefore, these findings proposed that excessive application of phosphate fertilizers could increase the risk of soil ARG transmission by increasing the body size of soil organisms. This study highlights the significance of organisms' body size in determining the distribution of soil ARGs and proposes a new disadvantage of excessive fertilization from the perspective of ARGs.

Collective self-optimization of binary mixed heterogeneous populations.

To maximize the survival chances of society members, collective self-organization must balance individual interests with promoting the collective welfare. Although situations where group members have equal optimal values are clear, how varying optimal values impacts group dynamics remains unclear. To address this gap, we conducted a self-optimization study of a binary system incorporating communication-enabled active particles with distinct optimal values. We demonstrate that similar particles will spontaneously aggregate and separate from each other to maximize their individual benefits during the process of self-optimization. Our research shows that both types of particles can produce the optimal field values at low density. However, only one type of particle can achieve the optimal field values at medium density. At high densities, neither type of particle is effective in reaching the optimal field values. Interestingly, we observed that during the self-optimization process, the mixture demixed spontaneously under certain circumstances of mixed particles. Particles with higher optimal values developed into larger clusters, while particles with lower optimal values migrated outside of these clusters, resulting in the separation of the mixture. To achieve this separation, suitable noise intensity, particle density, and the significant difference in optimal values were necessary. Our results provide a more profound comprehension of the self-optimization of synthetic or biological agents' communication and provide valuable insight into separating binary species and mixtures.

Evaluation of the effect of a novel substrate that is composed of landfill-mined-soil-like-fractions on plant growth and heavy metal accumulation.

In the pursuit of a safe, low-cost, and sustainable method for the reuse of landfill-mined-soil-like-fractions (LFMSFs), pot experiments were conducted using seven growth substrates consisting of LFMSFs, tea residue, and peat for the cultivation of Photinia × fraseri. Six of the substrates had 40 %:60 %, 60 %:40 %, and 80 %:20 % volume ratios of LFMSFs to tea residue or peat, and one substrate consisted entirely of LFMSFs. The physicochemical properties of the substrate, growth parameters of the plants, and heavy metal content in the different pots were determined after one year of growth. The results indicated that the physicochemical properties of the substrate, that was composed of a mixture of LFMSFs and tea residue showed a significant improvement in organic matter, nitrogen, phosphorus, and potassium. However, there was also an increase in the salt and heavy metal contents when compared with those of peat. The plant growth in the LFMSF and tea residue substrate was slightly lower than that in the LFMSF and peat mixture. Notably, the best plant growth and environmentally friendly effects were observed when LFMSFs were added at 40 %. Additionally, most of the heavy metals were primarily removed from the substrate through the leaves of the seedlings, with the heavy metal contents being relatively low. In conclusion, LFMSFs as a cultivation substrate, represent a practical approach for reutilization, which could contribute to the reduction of reliance on traditional resources.

Reordering and synchronization of electrical turbulence in cardiac tissue through global and partial optogenetical illumination.

Electrical turbulence in the heart is considered the culprit of cardiac disease, including the fatal ventricular fibrillation. Optogenetics is an emerging technology that has the capability to produce action potentials of cardiomyocytes to affect the electric wave propagation in cardiac tissue, thereby possessing the potential to control the turbulence, by shining a rotating spiral pattern onto the tissue. In this paper, we present a method to reorder and synchronize electrical turbulence through optogenetics. A generic two-variable reaction-diffusion model and a simplified three-variable ionic cardiac model are used. We discuss cases involving either global or partial illumination.

Pathogen resistance in soils associated with bacteriome network reconstruction through reductive soil disinfestation.

Reductive soil disinfestation (RSD) is an effective bioremediation technique to restructure the soil microbial community and eliminate soilborne phytopathogens. Yet we still lack a comprehensive understanding of the keystone taxa involved and their roles in ecosystem functioning in degraded soils treated by RSD. In this study, the bacteriome network structure in RSD-treated soil and the subsequent cultivation process were explored. As a result, bacterial communities in RSD-treated soil developed more complex topologies and stable co-occurrence patterns. The richness and diversity of keystone taxa were higher in the RSD group (module hub: 0.57%; connector: 23.98%) than in the Control group (module hub: 0.16%; connector: 19.34%). The restoration of keystone taxa in RSD-treated soil was significantly (P < 0.01) correlated with soil pH, total organic carbon, and total nitrogen. Moreover, a strong negative correlation (r = -0.712; P < 0.01) was found between keystone taxa richness and Fusarium abundance. Our results suggest that keystone taxa involved in the RSD network structure are capable of maintaining a flexible generalist mode of metabolism, namely with respect to nitrogen fixation, methylotrophy, and methanotrophy. Furthermore, distinct network modules composed by numerous anti-pathogen agents were formed in RSD-treated soil; i.e., the genera Hydrogenispora, Azotobacter, Sphingomonas, and Clostridium_8 under the soil treatment stage, and the genera Anaerolinea and Pseudarthrobacter under the plant cultivation stage. The study provides novel insights into the association between fungistasis and keystone or sensitive taxa in RSD-treated soil, with significant implications for comprehending the mechanisms of RSD. KEY POINTS: • RSD enhanced bacteriome network stability and restored keystone taxa. • Keystone taxa richness was negatively correlated with Fusarium abundance. • Distinct sensitive OTUs and modules were formed in RSD soil.

Contributions of carbon source, crop cultivation, and chemical property on microbial community assemblage in soil subjected to reductive disinfestation.

In agricultural practice, reductive soil disinfestation (RSD) is an effective method for eliminating soil-borne pathogens that depends heavily on carbon source. However, knowledge regarding the assembly of soil microbial communities in RDS-treated soils amended with different carbon sources after continuous crop cultivation is still not well-characterized. RSD treatments were performed on greenhouse soil with six different carbon sources (ethanol, glucose, alfalfa, wheat bran, rice bran, and sugarcane residue), which have different C:N ratios (Org C/N) and easily oxidized carbon contents (Org EOC). After RSD, two consecutive seasons of pepper pot experiments were conducted. Then, the effects of carbon source property, crop cultivation, and soil chemical property on soil microbial community reestablishment, pathogen reproduction, and crop performance were investigated in the RSD-cropping system. Variation partition analysis indicated that carbon source property, crop cultivation, and soil chemical property explained 66.2 and 39.0% of bacterial and fungal community variation, respectively. Specifically, Mantel tests showed that Org C/N, crop cultivation, soil available phosphorus and potassium were the most important factors shaping bacterial community composition, while Org C/N, Org EOC, and crop cultivation were the most important factors shaping fungal community composition. After two planting seasons, the number of cultivable Fusarium was positively correlated with Org EOC, and negatively correlated with soil total organic carbon, Fungal Chao1, and Fungal PC1. Crop yield of complex-carbon soils (Al, Wh, Ri and Su) was negatively affected by Org C/N after the first season, and it was highest in Al, and lower in Et and Su after the second season. Overall, Org EOC and Org C/N of carbon source were vitally important for soil microbe reestablishment, Fusarium reproduction and crop performance. Our findings further broaden the important role of carbon source in the RSD-cropping system, and provide a theoretical basis for organic carbon selection in RSD practice.

Physicochemical properties and risk assessment of perishable waste primary products.

Fertilization has become one of the most important ways to recycle perishable waste. In order to reveal the effect of the nutrient of the perishable waste primary products on the market and the possible impact of their application, 136 perishable waste primary products were sampled in nine cities in Zhejiang province, China. The result shows that these products have high nutrient content (average nutrient content was 5.00%). However, the conductivity (7.19 mS/cm) total soluble salt content (12.07%), and grease content (5.99%) were too high. The excessive salt and grease may cause harm to soil and crops, and become the main limiting factors for the fertilizer utilization of perishable waste. Heavy metal content of most of the samples met current commercial organic fertilizer standards, except that lead and chromium content of some samples exceeded the limit standard. Toluene, ethylbenzene, m & p-xylene were generally detected in the samples. These toxic and harmful substances have brought risks to the safe use of perishable waste into fertilizers.

Assessing Pb-Cr Pollution Thresholds for Ecological Risk and Potential Health Risk in Selected Several Kinds of Rice.

The expected typical gley moist paddy soil was collected in Zhejiang Province, China, and conventional (XS 134 and JH 218) and varieties of hybrid (YY 538 and CY 84) rices were used for a pot experiment. The effects of exogenous heavy metals lead (Pb) and chromium (Cr) on rice growth and the accumulation of heavy metals in the grains were studied. The results show that heavy metal concentrations in soil and rice grains have significant correlations, and Pb and Cr significantly (p < 0.05) inhibited the rice growth (plant height and panicle weight). The potential ecological hazard index (RI) of heavy metals in the soil was 4.88−6.76, which belongs to the grade of "slight ecological hazard", and Pb provides a larger potential ecological hazard than Cr in the studied region. The thresholds for potential health risks and ecological risks for Pb and Cr were lower than the "Control Standards for Soil Pollution Risk of Agricultural Land (Trial)" (GB15618-2018, China). This work provides the basis for soil pollution control for Pb and Cr and the selection of rice cultivars from Pb and Cr accumulated soils.

Microbial Succession and Interactions During the Manufacture of Fu Brick Tea.

Fu Brick tea is a very popular post-fermented tea that is known for its "golden flower fungus," Aspergillus cristatus, which becomes the dominant microbe during the maturation process. This study used both culture-dependent methods and high-throughput sequencing to track microbial succession and interactions during the development of the golden flower fungus, a crucial component of the manufacturing process of Fu Brick tea. Among the bacterial communities, Klebsiella and Lactobacillus were consistently cultured from both fresh tea leaves and in post-fermentation Fu Brick tea. Methylobacterium, Pelomonas, and Sphingomonas were dominant genera in fresh tea leaves but declined once fermentation started, while Bacillus, Kluyvera, and Paenibacillus became dominant after piling fermentation. The abundance of A. cristatus increased during the manufacturing process, accounting for over 98% of all fungi present after the golden flower bloom in the Fu Brick tea product. Despite their consistent presence during culture work, network analysis showed Lactobacillus and Klebsiella to be negatively correlated with A. cristatus. Bacillus spp., as expected from culture work, positively correlated with the presence of golden flower fungus. This study provides complete insights about the succession of microbial communities and highlights the importance of co-occurrence microbes with A. cristatus during the manufacturing process of Fu Brick tea.

Optimization of vegetable waste composting and the exploration of microbial mechanisms related to fungal communities during composting.

The application of additives to regulate the microbial functional composition during composting has attracted much research attention. However, little is known about the succession and role of the fungal community in the laboratory-scale composting of vegetable waste supplemented with pig manure and microbial agents. The purpose of this study was to identify effective additives for improving vegetable waste composting performance and product quality, and to analyze the microbial community succession during composting. The results showed that the combined addition of pig manure and microbial agents (T2 treatment) accelerated the pile temperature increase, enhanced total organic carbon degradation (23.36%), and promoted the maturation of the compost. Furthermore, the T2 treatment increased the activities of most enzymes, reshaped the microbial community, and reduced the relative abundance of potential animal (1.60%) and plant (0.095%) pathogens. The relative abundance of Firmicutes (71.23%) increased with the combined addition of pig manure and microbial agents in the thermophilic stage. In the middle and late stages, Saccharomonospora, Aspergillus, and Thermomyces, which were related to C/N and total phosphorus, were enriched in the T2 treatment. Network analysis demonstrated that the complexity and stability of the fungal network were more evidently increased in the T2 treatment, and Saccharomonospora, Aspergillus, and Microascus were identified as keystone taxa. The keystone taxa associated with extracellular enzymes contributed significantly to compost maturation. These results provide a reference for the application of additives to improve compost safety in pilot-scale composting.

Antagonistic and plant growth promotion effects of Mucor moelleri, a potential biocontrol agent.

With the increasing demand for high quality and environmentally safe or green food, Biological Control Agents (BCAs) are playing critical roles in green agriculture, which in turn has paved the way for the requirement of effective, appropriate microbial antagonists. In this study, Mucor moelleri AA1 was isolated and investigated for its growth promotion and antagonism against Athelia rolfsii and Colletotrichum gloeosporiodes. The results showed a high antagonistic activity of M. moelleri against A. rolfsii and C. gloeosporiodes with percentage inhibitions of 73 % and 86 % respectively using the dual plate method, and the same antagonistic activity was also observed in liquid cocultures. A pot study analysis showed significant suppression of the diseases as well as growth promotion on tomato. Scanning electron microscopy (SEM) indicated that M. moelleri inhibited the growth of mycelium and the production of web-like materials. Based on headspace-solid phase microextraction (HS-SPME) analysis, microbial volatile compounds were determined, which were mainly aromatic compounds and alkaloids. Also, several antagonistic enzymes, such as ß-1, 3- glucanase, proteases, catalase and ACC deaminase as well as the phytohormone IAA, were found to be produced by M. moelleri. Overall, these results combine to make M. moelleri a good prospective candidate for biological control and as a plant growth-promoting agent. The present study appears to be the first report identifying M. moelleri as a biological control agent.

Disentangling the Effects of Physicochemical, Genetic, and Microbial Properties on Phase-Driven Resistome Dynamics during Multiple Manure Composting Processes.

Composting alters manure-derived antibiotic resistance genes (ARGs) to a certain extent, which is largely dependent upon the composting phase, manure type, microbial phylogeny, and physicochemical properties. However, little is known about how these determinants influence the fate and dynamics of ARGs as well as the mechanisms underlying the ecological process of ARGs during composting. Here, we investigated the temporal patterns of ARGs and their correlations with a series of physicochemical, genetic, and microbial properties during pilot-scale composting of chicken, maggot, bovine, and swine manure. We detected 237 ARGs, 71 of which were co-occurring across all four composting processes and accounted for >80% of the sum of resistome abundance. In support of this ARG co-occurrence, variance partition analyses demonstrated that the manure type explained less resistome variations (5.6%) than the composting phase (21.6%). During the phase-driven resistome dynamics, ARGs showed divergent variations in abundance, and certain beta-lactams and multidrug ARGs were consistently enriched across multiple manure composting processes. Correlation analyses all led to the conclusion that the divergent ARG variations during composting were attributable to the unequal effects of physicochemical properties, mobile elements, and succession of indigenous microbiota, whereas antibiotic residues' effects were marginal. Ultimately, this study determines the relative importance of various key determinants in the phase-driven divergence of ARGs during multiple manure composting processes and demonstrates a clear need to evaluate risks posed by enriched ARGs toward their receiving environments.

Active colloids under geometrical constraints in viscoelastic media.

We study the behavior of active particles (APs) moving in a viscoelastic fluid in the presence of geometrical confinements. Upon approaching a flat wall, we find that APs slow down due to compression of the enclosed viscoelastic fluid. In addition, they receive a viscoelastic torque leading to sudden orientational changes and departure from walls. Based on these observations, we develop a numerical model which can also be applied to other geometries and yields good agreement with experimental data. Our results demonstrate, that APs are able to move through complex geometrical structures more effectively when suspended in a viscoelastic compared to a Newtonian fluid.

The process of biotransformation can produce insect protein and promote the effective inactivation of heavy metals.

An experiment was performed to study the inactivation effect of aerobic composting on heavy metals in maggot, pig and chicken manures. After composting, Cu mainly occurred in the oxidizable (OXI) fraction with a percentage distribution above 54%. Zn and Cd mainly existed in the bioavailable factor (BF), which has strong activity, with percentage distributions greater than 88.3% and 82.7%, respectively. Cr and Pb mainly existed in the stable residual (RES) fraction with a percentage distribution of approximately 50%. The aerobic composting process had a clear inactivation effect on heavy metals. For maggot manure compost in particular, the inactivation effects of Cu, Cr, Zn, Cd, and Pb were very good throughout the composting process, and the inactivation effect of Pb reached 54.42%. In addition, the process of biotransformation by housefly maggots promoted the conversion of fulvic acid (FA) to humic acid (HA) in pig manure, and the final increase in HA/FA after maggot manure composting was the largest among the different types of manure and beneficial to the inactivation of heavy metals. Compounds containing -CH3 and -CH2 groups were reduced, and aromatic structures were enhanced. Moreover, a maggot yield equivalent to 13.2% of the fresh pig manure was achieved during the process of biotransformation. The correlation analysis results showed that moisture content was an important factor affecting the inactivation rates of heavy metals in the three manure composts. Our results highlight that the process of biotransformation by housefly maggots can promote composting maturity and the inactivation of heavy metals, and produce a large amount of insect protein, yielding beneficial ecological and economic benefits.

[Degradation Characteristics of Antibiotics During Composting of Four Types of Feces].

The widespread use of antibiotics in feed results in a large number of antibiotic residues in feces. Composting technology can degrade these residual antibiotics. A pilot-scale aerobic composting device was used to analyze the antibiotic residues and composting degradation characteristics of four types of feces (maggot manure, chicken manure, pig manure, and cow manure). Results showed that sulfonamides (SAs), fluoroquinolones (FQs), tetracycline (TCs), and macrolides (MAs) were the main antibiotics, and different type of feces had different dominant antibiotics. The contents of FQs and oxytetracycline (OTC) were none on the seventh day of the compost, and their degradation rates were the fastest. After composting, the degradation rate of doxycycline (DOX) in the four types of fecal composts was more than 85%. Meanwhile, the degradation rates of SAs in chicken, pig, and cow manure composts were also more than 80%, which was much lower in the one in maggot manure compost. MAs were only found in maggot manure, and the degradation rate was 70.79% after composting. Correlation analysis indicated that the water content and bulk density were the most important environmental factors affecting the degradation rates of antibiotics in the four types of fecal composts.

Rectification and separation of mixtures of active and passive particles driven by temperature difference.

Transport and separation of binary mixtures of active and passive particles are investigated in the presence of temperature differences. It is found that temperature differences can strongly affect the rectification and separation of the mixtures. For active particles, there exists an optimal temperature difference at which the rectified efficiency is maximal. Passive particles are not propelled and move by collisions with active particles, so the response to temperature differences is more complicated. By changing the system parameters, active particles can change their directions, while passive particles always move in the same direction. The simulation results show that the separation of mixtures is sensitive to the system parameters, such as the angular velocity, the temperature difference, and the polar alignment. The mixed particles can be completely separated under certain conditions.

Utilization of gibberellin fermentation residues with swine manure by two-step composting mediated by housefly maggot bioconversion.

The ecological disposal of gibberellin fermentation residues (GFRs) is urgently needed. This study explored a new method of direct GFR utilization with swine manure at different substitution proportions (0%, 20%, 40%, and 60%) using two-step composting mediated by housefly maggot bioconversion. Regarding maggot bioconversion, substitution of GFRs accelerated the temperature increase and water content decrease, slowed the pH increase, and enhanced the maggot conversion rate. Among the proportions, 20% GFR substitution had the highest maggot conversion rate of 15.15%. During the composting stage, GFR substitution promoted the initial temperature increase and the water content decrease and maintained a relatively low pH. However, only 20% substitution promoted the maturity of compost. The degradation rates of the gibberellin residue were all higher than 97% in the treatments with GFRs after two-step composting. High-throughput sequencing analysis showed that GFR substitution had significant effects on the microbial community structure during the whole process. However, the change in the microbial community was similar to that of conventional composting. Therefore, this innovative approach is feasible for GFR resource utilization, and substitution below 20% for swine manure is recommended.

Giant negative mobility of inertial particles caused by the periodic potential in steady laminar flows.

Transport of an inertial particle advected by a two-dimensional steady laminar flow is numerically investigated in the presence of a constant force and a periodic potential. Within particular parameter regimes, this system exhibits absolute negative mobility, which means that the particle can travel in a direction opposite to the constant force. It is found that the profile of the periodic potential plays an important role in the nonlinear response regime. Absolute negative mobility can be drastically enhanced by applying appropriate periodic potential, the parameter regime for this phenomenon becomes larger and the amplitude of negative mobility grows exceedingly large (giant negative mobility). In addition, giant positive mobility is also observed in the presence of appropriate periodic potential.

Transport of particles driven by the traveling obstacle arrays.

Transport of three types of particles (passive particles, active particles without polar interaction, and active particles with polar interaction) is numerically investigated in the presence of traveling obstacle arrays. The transport behaviors are different for different types of particles. For passive particles, there exists an optimal traveling speed (or the translational diffusion) at which the average velocity of particles takes its maximum value. For active particles without polar interaction, the average velocity of particles is a peaked function of the obstacle traveling speed. The average velocity decreases monotonically with increase of the rotational diffusion for large driving speed, while it is a peaked function of the rotational diffusion for small driving speed. For active particles with polar interaction, interestingly, within particular parameter regimes, active particles can move in the opposite direction to the obstacles. The average velocity of particles can change its direction by changing the system parameters (the obstacles driving speed, the polar interaction strength, and the rotational diffusion).

Transport and diffusion of paramagnetic ellipsoidal particles in a rotating magnetic field.

Transport and diffusion of paramagnetic ellipsoidal particles under the action of a rotating magnetic field are numerically investigated in a two-dimensional channel. It is found that paramagnetic ellipsoidal particles in a rotating magnetic field can be rectified in the upper-lower asymmetric channel. The transport and the effective diffusion coefficient are much more different and complicated for active particles, while they have similar behaviors and change a little when applying rotating magnetic fields of different frequencies for passive particles. For active particles, the back-and-forth rotational motion facilitates the effective diffusion coefficient and reduces the rectification, whereas the rotational motion synchronous with the magnetic field suppresses the effective diffusion coefficient and enhances the rectification. There exist optimized values of the parameters (the anisotropic degree, the amplitude and frequency of magnetic field, the self-propelled velocity, and the rotational diffusion rate) at which the average velocity and diffusion take their maximal values. Particles with different shapes, self-propelled speeds, or rotational diffusion rates will move to the opposite directions and can be separated by applying rotating magnetic fields of suitable strength and frequency. Our results can be used to separate particles, orient the particles along any direction at will during motion, and control the particle diffusion.