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1.
Molecules ; 29(3)2024 Jan 25.
Article in English | MEDLINE | ID: mdl-38338344

ABSTRACT

The pyrrolidine nitroxides with four bulky alkyl substituents adjacent to the N-O∙ group demonstrate very high resistance to reduction with biogenic antioxidants and enzymatic systems. This makes them valuable molecular tools for studying the structure and functions of biomolecules directly in a living cell and for functional EPR and NMR tomography in vivo. The first example of highly strained pyrrolidine nitroxides with both ethyl and tert-butyl groups at each of the α-carbon atoms of the nitroxide moiety with cis-configuration of the tert-butyl groups was prepared using a three-component domino reaction of tert-leucine and 2,2-dimethylpentan-3-one with dimethyl fumarate with subsequent conversion of the resulting strained pyrrolidine into 1-pyrroline-1-oxide and addition of EtLi. The nitroxide has demonstrated unexpectedly fast reduction with ascorbate, the rate constant k2 = (2.0 ± 0.1) × 10-3 M-1s-1. This effect was explained by destabilization of the planar nitroxide moiety due to repulsion with the two neighboring tert-butyl groups cis to each other.

2.
Molecules ; 27(21)2022 Nov 07.
Article in English | MEDLINE | ID: mdl-36364453

ABSTRACT

Sterically shielded nitroxides, which demonstrate high resistance to bioreduction, are the spin labels of choice for structural studies inside living cells using pulsed EPR and functional MRI and EPRI in vivo. To prepare new sterically shielded nitroxides, a reaction of cyclic nitrones, including various 1-pyrroline-1-oxides, 2,5-dihydroimidazole-3-oxide and 4H-imidazole-3-oxide with alkynylmagnesium bromide wereused. The reaction gave corresponding nitroxides with an alkynyl group adjacent to the N-O moiety. The hydrogenation of resulting 2-ethynyl-substituted nitroxides with subsequent re-oxidation of the N-OH group produced the corresponding sterically shielded tetraalkylnitroxides of pyrrolidine, imidazolidine and 2,5-dihydroimidazole series. EPR studies revealed large additional couplings up to 4 G in the spectra of pyrrolidine and imidazolidine nitroxides with substituents in 3- and/or 4-positions of the ring.


Subject(s)
Bromides , Imidazolidines , Cyclic N-Oxides/chemistry , Nitrogen Oxides/chemistry , Spin Labels , Oxides , Pyrrolidines/chemistry , Electron Spin Resonance Spectroscopy/methods
3.
Molecules ; 26(19)2021 Sep 23.
Article in English | MEDLINE | ID: mdl-34641310

ABSTRACT

Stable free radicals are widely used as molecular probes and labels in various biophysical and biomedical research applications of magnetic resonance spectroscopy and imaging. Among these radicals, sterically shielded nitroxides of pyrrolidine series demonstrate the highest stability in biological systems. Here, we suggest new convenient procedure for preparation of 3-carboxy-2,2,5,5-tetraethylpyrrolidine-1-oxyl, a reduction-resistant analog of widely used carboxy-Proxyl, from cheap commercially available reagents with the yield exceeding the most optimistic literature data. Several new spin labels and probes of 2,2,5,5-tetraethylpyrrolidine-1-oxyl series were prepared and reduction of these radicals in ascorbate solutions, mice blood and tissue homogenates was studied.

4.
J Chem Theory Comput ; 17(10): 6366-6386, 2021 Oct 12.
Article in English | MEDLINE | ID: mdl-34516119

ABSTRACT

The isotropic hyperfine coupling constant (HFCC, Aiso) of a pH-sensitive spin probe in a solution, HMI (2,2,3,4,5,5-hexamethylimidazolidin-1-oxyl, C9H19N2O) in water, is computed using an ensemble of state-of-the-art computational techniques and is gauged against X-band continuous wave electron paramagnetic resonance (EPR) measurement spectra at room temperature. Fundamentally, the investigation aims to delineate the cutting edge of current first-principles-based calculations of EPR parameters in aqueous solutions based on using rigorous statistical mechanics combined with correlated electronic structure techniques. In particular, the impact of solvation is described by exploiting fully atomistic, RISM integral equation, and implicit solvation approaches as offered by ab initio molecular dynamics (AIMD) of the periodic bulk solution (using the spin-polarized revPBE0-D3 hybrid functional), embedded cluster reference interaction site model integral equation theory (EC-RISM), and polarizable continuum embedding (using CPCM) of microsolvated complexes, respectively. HFCCs are obtained from efficient coupled cluster calculations (using open-shell DLPNO-CCSD theory) as well as from hybrid density functional theory (using revPBE0-D3). Re-solvation of "vertically desolvated" spin probe configuration snapshots by EC-RISM embedding is shown to provide significantly improved results compared to CPCM since only the former captures the inherent structural heterogeneity of the solvent close to the spin probe. The average values of the Aiso parameter obtained based on configurational statistics using explicit water within AIMD and from EC-RISM solvation are found to be satisfactorily close. Using either such explicit or RISM solvation in conjunction with DLPNO-CCSD calculations of the HFCCs provides an average Aiso parameter for HMI in aqueous solution at 300 K and 1 bar that is in good agreement with the experimentally determined one. The developed computational strategy is general in the sense that it can be readily applied to other spin probes of similar molecular complexity, to aqueous solutions beyond ambient conditions, as well as to other solvents in the longer run.

5.
Molecules ; 25(4)2020 Feb 14.
Article in English | MEDLINE | ID: mdl-32075085

ABSTRACT

Nitroxides are broadly used as molecular probes and labels in biophysics, structural biology, and biomedical research. Resistance of a nitroxide group bearing an unpaired electron to chemical reduction with low-molecular-weight antioxidants and enzymatic systems is of critical importance for these applications. The redox properties of nitroxides are known to depend on the ring size (for cyclic nitroxides) and electronic and steric effects of the substituents. Here, two highly strained nitroxides, 5-(tert-butyl)-5-butyl-2,2-diethyl-3-hydroxypyrrolidin-1-oxyl (4) and 2-(tert-butyl)-2-butyl-5,5-diethyl-3,4-bis(hydroxymethyl)pyrrolidin-1-oxyl (5), were prepared via a reaction of the corresponding 2-tert-butyl-1-pyrroline 1-oxides with butyllithium. Thermal stability and kinetics of reduction of the new nitroxides by ascorbic acid were studied. Nitroxide 5 showed the highest resistance to reduction.


Subject(s)
Antioxidants/chemistry , Nitrogen Oxides/chemistry , Organometallic Compounds/chemistry , Pyrroles/chemistry , Antioxidants/chemical synthesis , Biomedical Research/trends , Electron Transport , Organometallic Compounds/chemical synthesis , Oxidation-Reduction , Oxides/chemistry , Pyrroles/chemical synthesis
6.
Chemistry ; 22(41): 14598-604, 2016 Oct 04.
Article in English | MEDLINE | ID: mdl-27539325

ABSTRACT

It was shown that dipole-stabilized paramagnetic carbanion lithiated 4,4,5,5-tetramethyl-4,5-dihydro-1H-imidazol-1-oxyl 3-oxide can be attached in a nucleophilic manner to either isolated or conjugated aldonitrones of the 2,5-dihydroimidazole 3-oxide and 2H-imidazole 1-oxide series to afford adducts the subsequent oxidation of which leads to polyfunctional mono- and diradicals. According to XRD, at least two polymorphic modifications can be formed during crystallization of the resulting paramagnetic compounds, and for each of them, geometric parameters of the molecules are similar. An EPR spectrum of the diradical in frozen toluene has a complicated lineshape, which can be fairly well reproduced by using X-ray diffraction structural analysis and the following set of parameters: D=14.9 mT, E=1.7 mT; tensor a((14) N)=[0.260 0.260 1.625] mT, two equivalent tensors for the nitronyl nitroxide moiety a((14) N)=[0.198 0.198 0.700] mT, and g≈2.007. According to our DFT and ab initio calculations, the intramolecular exchange in the diradical is very weak and most likely ferromagnetic.

7.
J Org Chem ; 76(14): 5558-73, 2011 Jul 15.
Article in English | MEDLINE | ID: mdl-21634404

ABSTRACT

Recently, a new concept of pH-switchable agents for reversible addition-fragmentation chain transfer (RAFT) polymerization has been introduced by Benaglia et al. (J. Am. Chem. Soc.2009, 131, 6914-6915). In this paper we extended the concept of pH-switchable mediators to nitroxide mediated polymerization (NMP) by employing nitroxides with basic or acidic groups as controlling agents. Four alkoxyamines, the derivatives of 2-(4-(dimethylamino)-2-ethyl-5,5-dimethyl-2-(pyridin-4-yl)-2,5-dihydro-1H-imidazol-1-oxyl and 2-(2-carboxyethyl)-5,5-diethyl-2,4-dimethyl-2,5-dihydro-1H-imidazol-1-oxyl, have been prepared. The influence of pH on alkoxyamine homolysis rate constants (k(d)) and on the nitroxide-alkyl radical recombination rate constants (k(c)) was studied. All alkoxyamines under study as well as the parent nitroxides have several basic groups, which under pH variation can undergo consecutive protonation. It was shown that the k(d) value under basic conditions are significantly (up to 15-fold) higher than in acidic solution at the same temperature, whereas the k(c) value in basic solutions decrease by a factor of 2 only. The efficiency of NMP is known to be dependent on k(d) and k(c), both constants being dependent on the monomer structure; therefore the performance of NMP of different monomers in the controlled mode requires different conditions. It is shown that the pH value crucially affects the polymerization regime, changing it from the controlled to the uncontrolled mode. The controlled regime of NMP of different hydrophilic monomers (sodium 4-styrenesulphonate and acrylamide) in aqueous solution under mild conditions (90 °C) can be achieved using the same alkoxyamine by the variation of the pH value. The chain length of polymers depends on pH value during the polymerization.


Subject(s)
Amines/chemical synthesis , Imidazoles/chemistry , Nitrogen Oxides/chemistry , Amines/chemistry , Hydrogen-Ion Concentration , Magnetic Resonance Spectroscopy , Molecular Structure , Nitrogen Oxides/chemical synthesis , Stereoisomerism
8.
J Org Chem ; 71(16): 6044-52, 2006 Aug 04.
Article in English | MEDLINE | ID: mdl-16872187

ABSTRACT

Time-resolved chemically induced dynamic nuclear polarization (TR-CIDNP) and laser flash photolysis (LFP) techniques have been used to measure rate constants for coupling between acrylate-type radicals and a series of newly synthesized stable imidazolidine N-oxyl radicals. The carbon-centered radicals under investigation were generated by photolysis of their corresponding ketone precursors RC(O)R (R = C(CH3)2-C(O)OCH3 and CH(CH3)-C(O)-OtBu) in the presence of stable nitroxides. The coupling rate constants kc for modeling studies of nitroxide-mediated polymerization (NMP) experiments were determined, and the influence of steric and electronic factors on kc values was addressed by using a Hammett linear free energy relationship. The systematic changes in kc due to the varied steric (Es,n) and electronic (sigmaL,n) characters of the substituents are well-described by the biparameter equation log(kc/M- 1s(-1)) = 3.52sigmaL,n + 0.47Es,n + 10.62. Hence, kc decreases with the increasing steric demand and increases with the increasing electron-withdrawing character of the substituents on the nitroxide.


Subject(s)
Butyrates/chemistry , Carbon/chemistry , Imidazolidines/chemistry , Lasers , Nitrogen/chemistry , Oxides/chemistry , Photolysis , Propionates/chemistry , Free Radicals/chemistry , Molecular Structure , Temperature , Time Factors
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