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1.
Front Psychol ; 5: 534, 2014.
Article in English | MEDLINE | ID: mdl-24917840

ABSTRACT

Audiovisual (AV) speech integration is often studied using the McGurk effect, where the combination of specific incongruent auditory and visual speech cues produces the perception of a third illusory speech percept. Recently, several studies have implicated the posterior superior temporal sulcus (pSTS) in the McGurk effect; however, the exact roles of the pSTS and other brain areas in "correcting" differing AV sensory inputs remain unclear. Using functional magnetic resonance imaging (fMRI) in ten participants, we aimed to isolate brain areas specifically involved in processing congruent AV speech and the McGurk effect. Speech stimuli were composed of sounds and/or videos of consonant-vowel tokens resulting in four stimulus classes: congruent AV speech (AVCong), incongruent AV speech resulting in the McGurk effect (AVMcGurk), acoustic-only speech (AO), and visual-only speech (VO). In group- and single-subject analyses, left pSTS exhibited significantly greater fMRI signal for congruent AV speech (i.e., AVCong trials) than for both AO and VO trials. Right superior temporal gyrus, medial prefrontal cortex, and cerebellum were also identified. For McGurk speech (i.e., AVMcGurk trials), two clusters in the left posterior superior temporal gyrus (pSTG), just posterior to Heschl's gyrus or on its border, exhibited greater fMRI signal than both AO and VO trials. We propose that while some brain areas, such as left pSTS, may be more critical for the integration of AV speech, other areas, such as left pSTG, may generate the "corrected" or merged percept arising from conflicting auditory and visual cues (i.e., as in the McGurk effect). These findings are consistent with the concept that posterior superior temporal areas represent part of a "dorsal auditory stream," which is involved in multisensory integration, sensorimotor control, and optimal state estimation (Rauschecker and Scott, 2009).

2.
Proc Natl Acad Sci U S A ; 103(5): 1557-62, 2006 Jan 31.
Article in English | MEDLINE | ID: mdl-16432185

ABSTRACT

To understand the role of RNA-binding proteins (RBPs) in the regulation of gene expression, methods are needed for the in vivo identification of RNA-protein interactions. We have developed the peptide nucleic acid (PNA)-assisted identification of RBP technology to enable the identification of proteins that complex with a target RNA in vivo. Specific regions of the 3' and 5' UTRs of ankylosis mRNA were targeted by antisense PNAs transported into cortical neurons by the cell-penetrating peptide transportan 10. An array of proteins was isolated in complex with or near the targeted regions of the ankylosis mRNA through UV-induced crosslinking of the annealed PNA-RNA-RBP complex. The first evidence for pharmacological modulation of these specific protein-RNA associations was observed. These data show that the PNA-assisted identification of the RBP technique is a reliable method to rapidly identify proteins interacting in vivo with the target RNA.


Subject(s)
RNA/chemistry , Ribonucleoproteins/chemistry , Amino Acids/chemistry , Animals , Base Sequence , Cells, Cultured , Cross-Linking Reagents/pharmacology , DNA/chemistry , DNA Primers/chemistry , Fluorescent Dyes/pharmacology , Hippocampus/metabolism , Immunohistochemistry , Immunoprecipitation , In Situ Hybridization , Mass Spectrometry , Microscopy, Fluorescence , Molecular Sequence Data , Neurons/metabolism , Peptide Nucleic Acids/chemistry , Peptides/chemistry , Protein Binding , RNA, Messenger/metabolism , RNA-Binding Proteins/chemistry , Rats , Ribonucleoproteins/metabolism , Time Factors , Ultraviolet Rays
3.
Prog Neurobiol ; 72(2): 129-42, 2004 Feb.
Article in English | MEDLINE | ID: mdl-15063529

ABSTRACT

The cellular and the inter-connective complexity of the central nervous system (CNS) necessitate's analysis of functioning at both the system and single cell levels. Systems neuroscience has developed procedures that facilitate the analysis of multicellular systems including multielectrode arrays, dye tracings and lesioning assays, and at the single cell level there have been significant strides in assessing the physiology and morphology of individual cells. Until recently little progress had been made in understanding the molecular biology of single neuronal cells. This review will highlight the development of PCR and aRNA procedures for analysis of mRNA abundances in single cells. Also, other procedures for the analysis of protein abundances as well as the association of RNA with proteins will also be summarized. These procedures promise to provide experimental insights that will help unravel the functional mechanisms regulating the cellular components of the CNS.


Subject(s)
Gene Expression Profiling , Molecular Biology , Neurons/physiology , Animals , Cells, Cultured , Central Nervous System/physiology , Gene Expression Profiling/methods , Humans , In Vitro Techniques , Molecular Biology/methods , Polymerase Chain Reaction , RNA, Messenger/analysis
4.
Virology ; 314(2): 617-29, 2003 Sep 30.
Article in English | MEDLINE | ID: mdl-14554089

ABSTRACT

Three HIV-1-infected individuals, on virally-suppressive highly active anti-retroviral therapy (HAART), were treated in vivo with anti-retroviral inhibitor intensification and cell stimulatory therapies in attempting to eradicate latent viral reservoirs. Afterwards, the patients ceased all anti-retroviral drugs. Sequences of the V3 region of HIV-1 envelope protein (ENV) from patient peripheral blood mononuclear cell (PBMC) proviral DNA, patient blood plasma viral RNA and virion-associated RNA from viruses amplified by patient cell co-culture, were obtained before, during, and certain times after the clinical regimen. As anticipated, the V3 loop sequencing results indicate diversity in viral strain complexity among the individual patients. However, the detection of unique V3 ENV signature sequences or V3 signatures of low frequency, relative to those observed prior to therapy, indicate that the expression of specific viruses, or viruses of low abundance, can be induced through stimulation in vivo. Furthermore, this stimulation or general immune activation therapy (IAT) approach, consisting of administration of the anti-T-cell receptor antibody, OKT3, and IL-2 in vivo, appeared to have subsequently altered the genotype of the persistent viral reservoir in peripheral blood cells for two of the three patients.


Subject(s)
Antiretroviral Therapy, Highly Active , HIV Infections/drug therapy , HIV-1/genetics , HIV-1/physiology , Virus Latency , CD4-Positive T-Lymphocytes/virology , Disease Reservoirs , Genotype , HIV Envelope Protein gp120/chemistry , HIV Envelope Protein gp120/genetics , HIV Infections/immunology , HIV Infections/virology , HIV-1/classification , HIV-1/drug effects , Immunologic Memory , Molecular Sequence Data , Peptide Fragments/chemistry , Peptide Fragments/genetics , Phylogeny , RNA, Viral/blood , Sequence Analysis, DNA
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