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1.
Cell Death Discov ; 10(1): 288, 2024 Jun 15.
Article in English | MEDLINE | ID: mdl-38879630

ABSTRACT

As the mean age of first-time mothers increases in the industrialized world, inquiries into causes of human reproductive senescence have followed. Rates of ovulatory dysfunction and oocyte aneuploidy parallel chronological age, but poor reproductive outcomes in women older than 35 years are also attributed to endometrial senescence. The current studies, using primary human endometrial stromal cell (ESC) cultures as an in vitro model for endometrial aging, characterize the proinflammatory cytokine, IL-1ß-mediated and passage number-dependent effects on ESC phenotype. ESC senescence was accelerated by incubation with IL-1ß, which was monitored by RNA sequencing, ELISA, immunocytochemistry and Western blotting. Senescence associated secreted phenotype (SASP) proteins, IL-1ß, IL-6, IL-8, TNF-α, MMP3, CCL2, CCL5, and other senescence-associated biomarkers of DNA damage (p16, p21, HMGB1, phospho-γ-histone 2 A.X) were noted to increase directly in response to 0.1 nM IL-1ß stimulation. Production of the corresponding SASP proteins increased further following extended cell passage. Using enzyme inhibitors and siRNA interference, these effects of IL-1ß were found to be mediated via the c-Jun N-terminal kinase (JNK) signaling pathway. Hormone-induced ESC decidualization, classical morphological and biochemical endocrine responses to estradiol, progesterone and cAMP stimulation (prolactin, IGFBP-1, IL-11 and VEGF), were attenuated pari passu with prolonged ESC passaging. The kinetics of differentiation responses varied in a biomarker-specific manner, with IGFBP-1 and VEGF secretion showing the largest and smallest reductions, with respect to cell passage number. ESC hormone responsiveness was most robust when limited to the first six cell passages. Hence, investigation of ESC cultures as a decidualization model should respect this limitation of cell aging. The results support the hypotheses that "inflammaging" contributes to endometrial senescence, disruption of decidualization and impairment of fecundity. IL-1ß and the JNK signaling pathway are pathogenetic targets amenable to pharmacological correction or mitigation with the potential to reduce endometrial stromal senescence and enhance uterine receptivity.

2.
Am J Pathol ; 193(8): 1046-1058, 2023 08.
Article in English | MEDLINE | ID: mdl-37164275

ABSTRACT

Pelvic pain in women with endometriosis is attributed to neuroinflammation and afferent nociceptor nerves in ectopic and eutopic endometrium. The hypothesis that uterine nociception is activated by IL-1ß, a prominent cytokine in endometriosis, was tested herein. Immunofluorescence histochemistry confirmed the presence of neurons in human endometrial tissue. Expression of nerve growth factor (NGF) and brain-derived neurotrophic factor (BDNF) and their receptors in endometrial tissue and cells was validated by immunohistochemistry and Western blotting. Isolated endometrial stromal cells (ESCs) were subjected to dose-response and time-course experiments with IL-1ß and kinase inhibitors to characterize in vitro biomarkers. Neural biomarkers were co-localized in endometrial nerve fibers. NGF, BDNF, and their receptors tropomyosin receptor kinase (Trk) A, TrkB, and p75 neurotrophin receptor were all expressed in primary ESCs. IL-1ß stimulated higher TrkA/B expression in ESCs derived from endometriosis cases (2.8- ± 0.2-fold) than cells from controls (1.5- ± 0.3-fold, t-test, P < 0.01), effects that were mediated via the c-Jun N-terminal kinase (JNK) pathway. BDNF concentrations trended higher in peritoneal fluid of endometriosis cases but were not statistically different from controls (P = 0.16). The results support the hypothesis that NGF and BDNF and their corresponding receptors orchestrate innervation of the endometrium, which is augmented by IL-1ß. We postulate that JNK inhibitors, such as SP600125, have the potential to reduce neuroinflammation in women with endometriosis.


Subject(s)
Brain-Derived Neurotrophic Factor , Endometriosis , Female , Humans , Endometriosis/complications , Endometriosis/drug therapy , Endometriosis/metabolism , Nerve Growth Factor/metabolism , MAP Kinase Signaling System , Neuroinflammatory Diseases , Cells, Cultured , Pelvic Pain/drug therapy , Biomarkers/metabolism
3.
J Phys Condens Matter ; 34(12)2022 Jan 07.
Article in English | MEDLINE | ID: mdl-34915457

ABSTRACT

Neural network quantum states provide a novel representation of the many-body states of interacting quantum systems and open up a promising route to solve frustrated quantum spin models that evade other numerical approaches. Yet its capacity to describe complex magnetic orders with large unit cells has not been demonstrated, and its performance in a rugged energy landscape has been questioned. Here we apply restricted Boltzmann machines (RBMs) and stochastic gradient descent to seek the ground states of a compass spin model on the honeycomb lattice, which unifies the Kitaev model, Ising model and the quantum 120° model with a single tuning parameter. We report calculation results on the variational energy, order parameters and correlation functions. The phase diagram obtained is in good agreement with the predictions of tensor network ansatz, demonstrating the capacity of RBMs in learning the ground states of frustrated quantum spin Hamiltonians. The limitations of the calculation are discussed. A few strategies are outlined to address some of the challenges in machine learning frustrated quantum magnets.

4.
Front Big Data ; 5: 1080715, 2022.
Article in English | MEDLINE | ID: mdl-36687770

ABSTRACT

As one of the popular deep learning methods, deep convolutional neural networks (DCNNs) have been widely adopted in segmentation tasks and have received positive feedback. However, in segmentation tasks, DCNN-based frameworks are known for their incompetence in dealing with global relations within imaging features. Although several techniques have been proposed to enhance the global reasoning of DCNN, these models are either not able to gain satisfying performances compared with traditional fully-convolutional structures or not capable of utilizing the basic advantages of CNN-based networks (namely the ability of local reasoning). In this study, compared with current attempts to combine FCNs and global reasoning methods, we fully extracted the ability of self-attention by designing a novel attention mechanism for 3D computation and proposed a new segmentation framework (named 3DTU) for three-dimensional medical image segmentation tasks. This new framework processes images in an end-to-end manner and executes 3D computation on both the encoder side (which contains a 3D transformer) and the decoder side (which is based on a 3D DCNN). We tested our framework on two independent datasets that consist of 3D MRI and CT images. Experimental results clearly demonstrate that our method outperforms several state-of-the-art segmentation methods in various metrics.

5.
Proc Natl Acad Sci U S A ; 117(49): 30900-30906, 2020 12 08.
Article in English | MEDLINE | ID: mdl-33234568

ABSTRACT

Massive wildlife losses over the past 50 y have brought new urgency to identifying both the drivers of population decline and potential solutions. We provide large-scale evidence that air pollution, specifically ozone, is associated with declines in bird abundance in the United States. We show that an air pollution regulation limiting ozone precursors emissions has delivered substantial benefits to bird conservation. Our estimates imply that air quality improvements over the past 4 decades have stemmed the decline in bird populations, averting the loss of 1.5 billion birds, ∼20% of current totals. Our results highlight that in addition to protecting human health, air pollution regulations have previously unrecognized and unquantified conservation cobenefits.


Subject(s)
Air Pollution/analysis , Birds/physiology , Conservation of Natural Resources , Air Pollutants/toxicity , Animals , Geography , Ozone/toxicity , United States
7.
Am J Pathol ; 188(10): 2281-2292, 2018 10.
Article in English | MEDLINE | ID: mdl-30031725

ABSTRACT

Endometriosis implants are comprised of glandular and stromal elements, macrophages, nerves, and blood vessels and are commonly accompanied by pelvic pain. We propose that activated macrophages are recruited to and infiltrate nascent lesions, where they secrete proinflammatory cytokines, promoting the production of chemokines, neurotrophins, and angiogenic growth factors that sustain an inflammatory microenvironment. Immunohistochemical evaluation of endometriosis lesions reveals in situ colocalization of concentrated macrophages, brain-derived neurotrophic factor (BDNF), and nerve fibers. These observations were coupled with biochemical analyses of primary eutopic endometriosis stromal cell (EESC) cultures, which allowed defining potential pathways leading to the neuroangiogenic phenotype of these lesions. Our findings indicate that IL-1ß potently (EC50 = 7 ± 2 ng/mL) stimulates production of EESC BDNF at the mRNA and protein levels in an IL-1 receptor-dependent fashion. Selective kinase inhibitors demonstrate that this IL-1ß effect is mediated by c-Jun N-terminal kinase (JNK), NF-κB, and mechanistic target of rapamycin signal transduction pathways. IL-1ß regulation of regulated on activation normal T cell expressed and secreted (RANTES), a prominent EESC chemokine, also relies on JNK and NF-κB. An important clinical implication of the study is that interference with BDNF and RANTES production, by selectively targeting the JNK and NF-κB cascades, may offer a tractable therapeutic strategy to mitigate the pain and inflammation associated with endometriosis.


Subject(s)
Brain-Derived Neurotrophic Factor/biosynthesis , Cytokines/physiology , Endometriosis/physiopathology , Interleukin-1beta/pharmacology , Adult , Cells, Cultured , Chemokine CCL5/metabolism , Female , Humans , MAP Kinase Kinase 4/metabolism , Macrophages/metabolism , Macrophages/physiology , NF-kappa B/metabolism , Neovascularization, Pathologic/physiopathology , Neurogenesis/physiology , Stromal Cells/metabolism , Stromal Cells/physiology , Young Adult
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