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1.
Small ; : e2303682, 2023 Oct 10.
Article in English | MEDLINE | ID: mdl-37817368

ABSTRACT

Conception, pregnancy, and childbirth are complex processes that affect both mother and fetus. Thus, it is perhaps not surprising that in the United States alone, roughly 11% of women struggle with infertility and 16% of pregnancies involve some sort of complication. This presents a clear need to develop safe and effective treatment options, though the development of therapeutics for use in women's health and particularly in pregnancy is relatively limited. Physiological and biological changes during the menstrual cycle and pregnancy impact biodistribution, pharmacokinetics, and efficacy, further complicating the process of administration and delivery of therapeutics. In addition to the complex pharmacodynamics, there is also the challenge of overcoming physiological barriers that impact various routes of local and systemic administration, including the blood-follicle barrier and the placenta. Nanomedicine presents a unique opportunity to target and sustain drug delivery to the reproductive tract and other relevant organs in the mother and fetus, as well as improve the safety profile and minimize side effects. Nanomedicine-based approaches have the potential to improve the management and treatment of infertility, obstetric complications, and fetal conditions.

2.
Front Cell Infect Microbiol ; 13: 1015625, 2023.
Article in English | MEDLINE | ID: mdl-37065197

ABSTRACT

Introduction: Mucus in the female reproductive tract acts as a barrier that traps and eliminates pathogens and foreign particles via steric and adhesive interactions. During pregnancy, mucus protects the uterine environment from ascension of pathogens and bacteria from the vagina into the uterus, a potential contributor to intrauterine inflammation and preterm birth. As recent work has demonstrated the benefit of vaginal drug delivery in treating women's health indications, we sought to define the barrier properties of human cervicovaginal mucus (CVM) during pregnancy to inform the design of vaginally delivered therapeutics during pregnancy. Methods: CVM samples were self-collected by pregnant participants over the course of pregnancy, and barrier properties were quantified using multiple particle tracking. 16S rRNA gene sequencing was performed to analyze the composition of the vaginal microbiome. Results: Participant demographics differed between term delivery and preterm delivery cohorts, with Black or African American participants being significantly more likely to delivery prematurely. We observed that vaginal microbiota is most predictive of CVM barrier properties and of timing of parturition. Lactobacillus crispatus dominated CVM samples showed increased barrier properties compared to polymicrobial CVM samples. Discussion: This work informs our understanding of how infections occur during pregnancy, and directs the engineering of targeted drug treatments for indications during pregnancy.


Subject(s)
Microbiota , Premature Birth , Infant, Newborn , Pregnancy , Female , Humans , RNA, Ribosomal, 16S/genetics , Vagina/microbiology , Mucus , Microbiota/genetics
3.
Adv Drug Deliv Rev ; 191: 114543, 2022 12.
Article in English | MEDLINE | ID: mdl-36208729

ABSTRACT

Vaginal drug delivery systems are often preferred for treating a variety of diseases and conditions of the female reproductive tract (FRT), as delivery can be more targeted with less systemic side effects. However, there are many anatomical and biological barriers to effective treatment via the vaginal route. Further, biocompatibility with the local tissue and microbial microenvironment is desired. A variety of in vitro and ex vivo models are described herein for evaluating the physicochemical properties and toxicity profile of vaginal drug delivery systems. Deciding whether to utilize organoids in vitro or fresh human cervicovaginal mucus ex vivo requires careful consideration of the intended use and the formulation characteristics. Optimally, in vitro and ex vivo experimentation will inform or predict in vivo performance, and examples are given that describe utilization of a range of methods from in vitro to in vivo. Lastly, we highlight more advanced model systems for other mucosa as inspiration for the future in model development for the FRT.


Subject(s)
Nanoparticles , Female , Humans , Nanoparticles/chemistry , Drug Delivery Systems/methods , Vagina , Administration, Intravaginal , Mucus/chemistry
4.
Article in English | MEDLINE | ID: mdl-31555606

ABSTRACT

The success of fecal microbiota transplant (FMT) in treating recurrent Clostridioides difficile infection has led to growing excitement about the potential of using transplanted human material as a therapy for a wide range of diseases and conditions related to microbial dysbiosis. We anticipate that the next frontier of microbiota transplantation will be vaginal microbiota transplant (VMT). The composition of the vaginal microbiota has broad impact on sexual and reproductive health. The vaginal microbiota in the "optimal" state are one of the simplest communities, dominated by one of only a few species of Lactobacillus. Diversity in the microbiota and the concomitant depletion of lactobacilli, a condition referred to as bacterial vaginosis (BV), is associated with a wide range of deleterious effects, including increased risk of acquiring sexually transmitted infections and increased likelihood of having a preterm birth. However, we have very few treatment options available, and none of them curative or restorative, for "resetting" the vaginal microbiota to a more protective state. In order to test the hypothesis that VMT may be a more effective treatment option, we must first determine how to screen donors to find those with minimal risk of pathogen transmission and "optimal" vaginal microbiota for transplant. Here, we describe a universal donor screening approach that was implemented in a small pilot study of 20 women. We further characterized key physicochemical properties of donor cervicovaginal secretions (CVS) and the corresponding composition of the vaginal microbiota to delineate criteria for inclusion/exclusion. We anticipate that the framework described here will help accelerate clinical studies of VMT.


Subject(s)
Donor Selection/methods , Fecal Microbiota Transplantation/methods , Microbiota/physiology , Vagina/microbiology , Vaginosis, Bacterial/therapy , Adult , Female , Humans , Lactobacillus/genetics , Microbiota/genetics , Sexually Transmitted Diseases , Surveys and Questionnaires , Urinary Tract Infections/microbiology , Vaginosis, Bacterial/microbiology , Young Adult
5.
J Law Med Ethics ; 47(4): 555-567, 2019 12.
Article in English | MEDLINE | ID: mdl-31957577

ABSTRACT

The success of fecal microbiota transplantation (FMT) as a treatment for Clostrioides difficile infection (CDI) has stirred excitement about the potential for microbiota transplantation as a therapy for a wide range of diseases and conditions. In this article, we discuss vaginal microbiota transplantation (VMT) as "the next frontier" in microbiota transplantation and identify the medical, regulatory, and ethical challenges related to this nascent field. We further discuss what we anticipate will be the first context for testing VMT in clinical trials, prevention of the recurrence of a condition referred to as bacterial vaginosis (BV). We also compare clinical aspects of VMT with FMT and comment on how VMT may be similar to or different from FMT in ways that may affect research design and regulatory decisions.


Subject(s)
Biological Therapy/ethics , Biological Therapy/methods , Biological Therapy/trends , Body Fluids/microbiology , Microbiota , Vagina/microbiology , Vaginosis, Bacterial/therapy , Clinical Trials as Topic , Ethics, Research , Female , Government Regulation , Humans , Research Design , United States , United States Food and Drug Administration
6.
Hum Genet ; 134(9): 941-50, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26063662

ABSTRACT

Achromatopsia (ACHM) is an early-onset retinal dystrophy characterized by photophobia, nystagmus, color blindness and severely reduced visual acuity. Currently mutations in five genes CNGA3, CNGB3, GNAT2, PDE6C and PDE6H have been implicated in ACHM. We performed homozygosity mapping and linkage analysis in a consanguineous Pakistani ACHM family and mapped the locus to a 15.12-Mb region on chromosome 1q23.1-q24.3 with a maximum LOD score of 3.6. A DNA sample from an affected family member underwent exome sequencing. Within the ATF6 gene, a single-base insertion variant c.355_356dupG (p.Glu119Glyfs*8) was identified, which completely segregates with the ACHM phenotype within the family. The frameshift variant was absent in public variant databases, in 130 exomes from unrelated Pakistani individuals, and in 235 ethnically matched controls. The variant is predicted to result in a truncated protein that lacks the DNA binding and transmembrane domains and therefore affects the function of ATF6 as a transcription factor that initiates the unfolded protein response during endoplasmic reticulum (ER) stress. Immunolabeling with anti-ATF6 antibodies showed localization throughout the mouse neuronal retina, including retinal pigment epithelium, photoreceptor cells, inner nuclear layer, inner and outer plexiform layers, with a more prominent signal in retinal ganglion cells. In contrast to cytoplasmic expression of wild-type protein, in heterologous cells ATF6 protein with the p.Glu119Glyfs*8 variant is mainly confined to the nucleus. Our results imply that response to ER stress as mediated by the ATF6 pathway is essential for color vision in humans.


Subject(s)
Activating Transcription Factor 6/genetics , Color Vision Defects/genetics , Frameshift Mutation , Activating Transcription Factor 6/metabolism , Adolescent , Animals , Asian People/genetics , Color Vision Defects/physiopathology , Consanguinity , DNA Mutational Analysis , Exome , Female , Genotyping Techniques , Homozygote , Humans , Limit of Detection , Male , Mice , Mice, Inbred C57BL , Pakistan , Pedigree , Phenotype , Retina/physiopathology , Signal Transduction
7.
J Immunol ; 193(6): 3055-69, 2014 Sep 15.
Article in English | MEDLINE | ID: mdl-25114103

ABSTRACT

Aberrant immune response and changes in the gut microflora are the main causes of inflammatory bowel disease (IBD). Peptidoglycan recognition proteins (Pglyrp1, Pglyrp2, Pglyrp3, and Pglyrp4) are bactericidal innate immunity proteins that maintain normal gut microbiome, protect against experimental colitis, and are associated with IBD in humans. Nucleotide-binding oligomerization domain 2 (Nod2) is an intracellular bacterial sensor and may be required for maintaining normal gut microbiome. Mutations in Nod2 are strongly associated with Crohn's disease, but the causative mechanism is not understood, and the role of Nod2 in ulcerative colitis is not known. Because IBD is likely caused by variable multiple mutations in different individuals, in this study, we examined the combined role of Pglyrp3 and Nod2 in the development of experimental colitis in mice. We demonstrate that a combined deficiency of Pglyrp3 and Nod2 results in higher sensitivity to dextran sodium sulfate-induced colitis compared with a single deficiency. Pglyrp3(-/-)Nod2(-/-) mice had decreased survival and higher loss of body weight, increased intestinal bleeding, higher apoptosis of colonic mucosa, elevated expression of cytokines and chemokines, altered gut microbiome, and increased levels of ATP in the colon. Increased sensitivity to dextran sodium sulfate-induced colitis in Pglyrp3(-/-)Nod2(-/-) mice depended on increased apoptosis of intestinal epithelium, changed gut microflora, and elevated ATP. Pglyrp3 deficiency contributed colitis-predisposing intestinal microflora and increased intestinal ATP, whereas Nod2 deficiency contributed higher apoptosis and responsiveness to increased level of ATP. In summary, Pglyrp3 and Nod2 are both required for maintaining gut homeostasis and protection against colitis, but their protective mechanisms differ.


Subject(s)
Carrier Proteins/genetics , Colitis/prevention & control , Intestinal Mucosa/immunology , Intestinal Mucosa/microbiology , Nod2 Signaling Adaptor Protein/genetics , Adenosine Triphosphate/biosynthesis , Animals , Apoptosis , Bone Marrow Cells/immunology , Caspase 3/metabolism , Cell Proliferation , Cells, Cultured , Colitis/chemically induced , Cytokines/biosynthesis , Dextran Sulfate , Disease Models, Animal , Feces/microbiology , Female , Inflammation/immunology , Intestinal Mucosa/pathology , Macrophage Activation/immunology , Macrophages/immunology , Mice , Mice, Inbred BALB C , Mice, Knockout , Microbiota , Signal Transduction/immunology
8.
PLoS One ; 8(6): e67393, 2013.
Article in English | MEDLINE | ID: mdl-23840689

ABSTRACT

Inflammatory bowel disease (IBD) is a common disease, includes Crohn's disease (CD) and ulcerative colitis (UC), and is determined by altered gut bacterial populations and aberrant host immune response. Peptidoglycan recognition proteins (PGLYRP) are innate immunity bactericidal proteins expressed in the intestine. In mice, PGLYRPs modulate bacterial populations in the gut and sensitivity to experimentally induced UC. The role of PGLYRPs in humans with CD and/or UC has not been previously investigated. Here we tested the hypothesis that genetic variants in PGLYRP1, PGLYRP2, PGLYRP3 and PGLYRP4 genes associate with CD and/or UC and with gender and/or age of onset of disease in the patient population. We sequenced all PGLYRP exons in 372 CD patients, 77 UC patients, 265 population controls, 210 familial CD controls, and 24 familial UC controls, identified all polymorphisms in these populations, and analyzed the variants for significant association with CD and UC. We identified 16 polymorphisms in the four PGLYRP genes that significantly associated with CD, UC, and/or subgroups of patient populations. Of the 16, 5 significantly associated with both CD and UC, 6 with CD, and 5 with UC. 12 significant variants result in amino acid substitutions and based on structural modeling several of these missense variants may have structural and/or functional consequences for PGLYRP proteins. Our data demonstrate that genetic variants in PGLYRP genes associate with CD and UC and may provide a novel insight into the mechanism of pathogenesis of IBD.


Subject(s)
Carrier Proteins/genetics , Inflammatory Bowel Diseases/genetics , Age of Onset , Amino Acid Sequence , Animals , Carrier Proteins/chemistry , Case-Control Studies , Exons , Female , Humans , Male , Mice , Mutation, Missense , Polymorphism, Single Nucleotide , Sequence Homology, Amino Acid , Untranslated Regions
9.
Eur J Hum Genet ; 17(4): 474-82, 2009 Apr.
Article in English | MEDLINE | ID: mdl-18854872

ABSTRACT

Autosomal recessive retinitis pigmentosa (ARRP) is a genetically heterogeneous disorder. ARRP could be associated with extraocular manifestations that define specific syndromes such as Usher syndrome (USH) characterized by retinal degeneration and congenital hearing loss (HL). The USH type II (USH2) associates RP and mild-to-moderate HL with preserved vestibular function. At least three genes USH2A, the very large G-protein-coupled receptor, GPR98, and DFNB31 are responsible for USH2 syndrome. Here, we report on the segregation of non-syndromic ARRP and USH2 syndrome in a consanguineous Tunisian family, which was previously used to define USH2B locus. With regard to the co-occurrence of these two different pathologies, clinical and genetic reanalysis of the extended family showed (i) phenotypic heterogeneity within USH2 patients and (ii) excluded linkage to USH2B locus. Indeed, linkage analysis disclosed the cosegregation of the USH2 phenotype with the USH2C locus markers, D5S428 and D5S618, whereas the ARRP perfectly segregates with PDE6B flanking markers D4S3360 and D4S2930. Molecular analysis revealed two new missense mutations, p.Y6044C and p.W807R, occurring in GPR98 and PDE6B genes, respectively. In conclusion, our results show that the USH2B locus at chromosome 3p23-24.2 does not exist, and we therefore withdraw this locus designation. The combination of molecular findings for GPR98 and PDE6B genes enable us to explain the phenotypic heterogeneity and particularly the severe ocular affection first observed in one USH2 patient. This report presents an illustration of how consanguinity could increase familial clustering of multiple hereditary diseases within the same family.


Subject(s)
Cyclic Nucleotide Phosphodiesterases, Type 6/genetics , Mutation , Receptors, G-Protein-Coupled/genetics , Amino Acid Sequence , Base Sequence , Consanguinity , Cyclic Nucleotide Phosphodiesterases, Type 6/metabolism , Family , Hearing Loss/congenital , Humans , Molecular Sequence Data , Pedigree , Phenotype , Receptors, G-Protein-Coupled/metabolism , Retinal Degeneration/genetics , Retinitis Pigmentosa/genetics , Retinitis Pigmentosa/metabolism , Tunisia , Usher Syndromes/genetics , Usher Syndromes/metabolism
10.
Hum Mutat ; 29(4): 502-11, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18181211

ABSTRACT

Recessive mutations of MYO7A, encoding unconventional myosin VIIA, can cause either a deaf-blindness syndrome (type 1 Usher syndrome; USH1B) or nonsyndromic deafness (DFNB2). In our study, deafness segregating as a recessive trait in 24 consanguineous families showed linkage to markers for the DFNB2/USH1B locus on chromosome 11q13.5. A total of 23 of these families segregate USH1 due to 17 homozygous mutant MYO7A alleles, of which 14 are novel. One family segregated nonsyndromic hearing loss DFNB2 due to a novel three-nucleotide deletion in an exon of MYO7A (p.E1716del) encoding a region of the tail domain. We hypothesized that DFNB2 alleles of MYO7A have residual myosin VIIA. To address this question we investigated the effects of several mutant alleles by making green fluorescent protein (GFP) tagged cDNA expression constructs containing engineered mutations of mouse Myo7a at codons equivalent to pathogenic USH1B and DFNB2 alleles of human MYO7A. We show that in transfected mouse hair cells an USH1B mutant GFP-myosin VIIa does not localize properly to inner ear hair cell stereocilia. However, a GFP-myosin VIIa protein engineered to have an equivalent DFNB2 mutation to p.E1716del localizes correctly in transfected mouse hair cells. This finding is consistent with the hypothesis that p.E1716del causes a less severe phenotype (DFNB2) than the USH1B-associated alleles because the resulting protein retains some degree of normal function.


Subject(s)
Deafness/genetics , Dyneins/genetics , Mutation , Myosins/genetics , Adult , Alleles , Amino Acid Sequence , Animals , Base Composition , Chromosomes, Human, Pair 11/genetics , Consanguinity , DNA, Complementary/genetics , Deafness/metabolism , Deafness/physiopathology , Dyneins/chemistry , Dyneins/metabolism , Exons , Female , Genes, Recessive , Genetic Linkage , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Hair Cells, Auditory, Inner/metabolism , Humans , Kinetics , Male , Mice , Middle Aged , Models, Molecular , Molecular Sequence Data , Myosin VIIa , Myosins/chemistry , Myosins/metabolism , Pedigree , Phenotype , Protein Conformation , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Sequence Deletion , Sequence Homology, Amino Acid , Transfection , Usher Syndromes/genetics , Usher Syndromes/metabolism , Usher Syndromes/physiopathology
11.
Hum Genet ; 122(3-4): 293-9, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17605048

ABSTRACT

Mutation in the PROM1 gene previously has been identified in one family with retinal degeneration for which neither ERG recordings nor detailed information about visual impairment is available. A large family with multiple individuals affected by retinal degeneration was ascertained in the Punjab province of Pakistan. The visual acuity of all affected patients in the family was severely compromised beginning in early childhood. The retinal disease in this family is a severe form of retinitis pigmentosa (RP) accompanied by macular degeneration. Fundus changes advanced with age. Choriocapillaris atrophy and posterior RPE atrophy were obvious allowing visualization of the large choroidal vessels in patients over 40 years of age. Rod and cone responses on ERG recordings were extinguished in patient's teens. A genome-wide scan mapped the disease to a 34.7 cM region of chromosome 4p14-p16 between D4S1599 and D4S405. A maximum lod score of 3.96 with D4S403 and D4S391 is seen at theta = 0. Sequence analysis of PROM1 located in the linkage interval identified a c.1726C>T homozygous transition in exon 15: resulting in p.Gln576X in the translated protein. This mutation is found in a homozygous state in all six affected individuals and was heterozygous in five of the six unaffected family members examined. The mutation was not detected in 192 chromosomes of unrelated control individuals of the same ethnicity and from the same region. This delineates the phenotypic characteristics of retinopathy caused by mutations in PROM1.


Subject(s)
Antigens, CD/genetics , Chromosomes, Human, Pair 4/genetics , Codon, Nonsense , Glycoproteins/genetics , Peptides/genetics , Retinitis Pigmentosa/genetics , AC133 Antigen , Adolescent , Adult , Amino Acid Sequence , Base Sequence , Chromosome Mapping , Consanguinity , DNA/genetics , Electroretinography , Female , Haplotypes , Heterozygote , Homozygote , Humans , Lod Score , Macular Degeneration/genetics , Macular Degeneration/pathology , Male , Pedigree , Phenotype , Retinitis Pigmentosa/pathology
12.
Mol Vis ; 12: 1283-91, 2006 Oct 26.
Article in English | MEDLINE | ID: mdl-17110911

ABSTRACT

PURPOSE: To localize and identify the gene and mutations causing autosomal recessive retinitis pigmentosa (RP) in consanguineous Pakistani families. METHODS: Families were ascertained and patients underwent complete ophthalmological examinations. Blood samples were collected and DNA was extracted. A genome-wide scan was performed using 382 polymorphic microsatellite markers on genomic DNA from affected and unaffected family members, and lod scores were calculated. RESULTS: A genome-wide scan of 50 families gave a lod score of 7.4172 with D5S2015 using HOMOG1. RP in all 4 linked families mapped to a 13.85 cM (14.87 Mb) region on chromosome 5q31-33 flanked by D5S2090 and D5S422. This region harbors the PDE6A gene, which is known to cause autosomal recessive RP. Sequencing of PDE6A showed a homozygous single base pair change; c.889C->T, single base pair insertion; c.2218-2219insT, and single base pair substitution in the splice acceptor site; IVS10-2A->G in each of three families. In the fourth family linked to this region, no disease-causing mutation was identified in the PDE6A gene. CONCLUSIONS: These results provide strong evidence that mutations in PDE6A result in recessive RP in three consanguineous Pakistani families. Although a fourth family was linked to markers in the 5q31-33 interval, no mutation was identified in PDE6A.


Subject(s)
Asian People/genetics , Consanguinity , Phosphoric Diester Hydrolases/genetics , Retinal Rod Photoreceptor Cells/enzymology , Retinitis Pigmentosa/enzymology , Retinitis Pigmentosa/genetics , Base Sequence , Chromosomes, Human, Pair 5 , Cytosine , DNA Transposable Elements , Fundus Oculi , Genes, Recessive , Humans , Isoenzymes/genetics , Lod Score , Molecular Sequence Data , Mutation , Pakistan , Retinitis Pigmentosa/pathology , Thymine
13.
Mol Vis ; 11: 977-85, 2005 Nov 14.
Article in English | MEDLINE | ID: mdl-16319817

ABSTRACT

PURPOSE: The purpose of this paper is to map the locus for a variant form of Oguchi disease in a Pakistani family and to identify the causative mutation. METHODS: Family 61029 was ascertained in the Punjab province of Pakistan. It includes three 13- to 19-year-old patients with night blindness and 12 unaffected family members. A complete ophthalmological examination including fundus photography and electroretinography (ERG) was performed on each family member. A genome-wide scan was performed using microsatellite markers at about 10 cM intervals, and two-point lod scores were calculated. Polymerase chain reaction (PCR) cycle dideoxynucleotide sequencing was used to screen candidate genes inside the linked region for mutations and to delineate the deletion. Multiplex PCR and long template PCR were used to detect deletions and to define the size of deletions. Evaluation of fundus changes and ERG, lod score estimation, and identification of a mutation in the GRK1 gene were carried out. RESULTS: All patients had night blindness since early childhood. Irregular coarse pigmentation was observed in the peripheral retina of each patient. The fundus appearance before and after 4 h of dark adaptation was similar except that the peripheral retinal pigmentary changes were slightly less evident after extended dark adaptation. Minimal or no rod function with normal cone function on ERG recordings were detected in all three affected members. The rod showed slow recovery to nearly normal amplitude after 4 h in the dark ERG in one individual but not in two other patients. A genome-wide scan showed linkage only to D13S285. Fine mapping defined a region from D13S1315 to 13qter, with a lod score of 2.89 at theta=0 shown by D13S285 and 2.90 at theta=0 by the D13S261-D13S285-D13S1295-D13S293 haplotype. Analysis of the GRK1 gene, which is included in this interval, identified a c.827+623_883del mutation. This intragenic deletion cosegregates with the disease in the family and is only homozygous in affected individuals. This mutation was not detected in 96 controls. CONCLUSIONS: The retinal disease in the family reported here has several features differing from typical Oguchi disease, including an atypical Mizuo-Nakamura phenomenon and a non-recordable rod ERG even after 4 h of dark adaptation. Normal visual acuity, normal caliber of retinal blood vessels, and normal cone response on ERG recording suggest retinal dysfunction rather than degeneration (i.e., a variant form of Oguchi disease but unlikely to be retinitis pigmentosa). The disease in the Pakistani family localizes to 13q34 and is caused by a novel deletion including Exon 3 of the GRK1 gene.


Subject(s)
Chromosomes, Human, Pair 13/genetics , G-Protein-Coupled Receptor Kinase 1/genetics , Gene Deletion , Night Blindness/genetics , Retinal Diseases/genetics , Adolescent , Adult , Chromosome Mapping , Consanguinity , Dark Adaptation , Electroretinography , Exons/genetics , Female , Genetic Linkage , Humans , Lod Score , Male , Night Blindness/ethnology , Night Blindness/physiopathology , Pakistan/epidemiology , Pedigree , Polymerase Chain Reaction , Retina/physiopathology , Retinal Diseases/ethnology , Retinal Diseases/physiopathology
14.
Hum Genet ; 118(3-4): 356-65, 2005 Dec.
Article in English | MEDLINE | ID: mdl-16189710

ABSTRACT

A severe form of autosomal recessive retinitis pigmentosa (arRP) was identified in a large Pakistani family ascertained in the Punjab province of Pakistan. All affected individuals in the family had night blindness in early childhood, early complete loss of useful vision, and typical RP fundus changes plus macular degeneration. After exclusion of known arRP loci, a genome-wide scan was performed using microsatellite markers at about 10 cM intervals and calculating two-point lod scores. PCR cycle dideoxynucleotide sequencing was used to sequence candidate genes inside the linked region for mutations. RP in this family shows linkage to markers in a 10.5 cM (8.9 Mbp) region of chromosome 1p13.3-p21.2 between D1S2896 and D1S457. D1S485 yields the highest lod score of 6.54 at theta=0. Sequencing the exons and intron-exon boundaries of five candidate genes and six ESTs in this region, OLFM3, GNAI3, LOC126987, FLJ25070, DKFZp586G0123, AV729694, BU662869, BU656110, BU171991, BQ953690, and CA397743, did not identify any causative mutations. This novel locus lies approximately 4.9 cM (7.1 Mbp) from ABCA4, which is excluded from the linked region. Identification and study of this gene may help to elucidate the phenotypic diversity of arRP mapping to this region.


Subject(s)
Chromosome Mapping , Chromosomes, Human, Pair 1 , Retinitis Pigmentosa/genetics , Adolescent , Adult , Child , Exons , Female , Genotype , Humans , Inheritance Patterns , Introns , Male , Microsatellite Repeats , Pakistan , Pedigree , Phenotype , Retinitis Pigmentosa/pathology
15.
Invest Ophthalmol Vis Sci ; 46(7): 2264-70, 2005 Jul.
Article in English | MEDLINE | ID: mdl-15980210

ABSTRACT

PURPOSE: To localize and identify the gene and mutations causing autosomal recessive retinitis pigmentosa in three consanguineous Pakistani families. METHODS: Blood samples were collected and DNA was extracted. A genome-wide scan was performed by using 382 polymorphic microsatellite markers on genomic DNA from affected and unaffected family members, and lod scores were calculated. RESULTS: A genome-wide scan of 25 families gave an hlod = 4.53 with D8S260. Retinitis pigmentosa in all three families mapped to a 14.21-cM (21.19-Mb) region on chromosome 8 at q11, flanked by D8S532 and D8S260. This region harbors RP1, which is known to cause autosomal dominant retinitis pigmentosa. Sequencing of the coding exons of RP1 showed mutations in all three families: two single-base deletions, c.4703delA and c.5400delA, resulting in a frame shift, and a 4-bp insertion, c.1606insTGAA, all causing premature termination of the protein. All affected individuals in these families are homozygous for the mutations. Parents and siblings heterozygous for the mutant allele did not show any signs or symptoms of RP. CONCLUSIONS: These results provide strong evidence that mutations in RP1 can result in recessive as well as dominant retinitis pigmentosa. The findings suggest that truncation of RP1 before the BIF motif or within the terminal portion results in a simple loss of RP1 function, producing a recessive inheritance pattern. In contrast, disruption of RP1 within or immediately after the BIF domain may result in a protein with a deleterious effect and hence a dominant inheritance pattern.


Subject(s)
Codon, Nonsense , Eye Proteins/genetics , Frameshift Mutation , Retinitis Pigmentosa/genetics , Chromosomes, Human, Pair 8/genetics , Consanguinity , DNA Mutational Analysis , Electroretinography , Female , Genes, Recessive , Genetic Linkage , Genetic Testing , Genotype , Humans , Lod Score , Male , Microsatellite Repeats , Microtubule-Associated Proteins , Pakistan/epidemiology , Pedigree , Polymerase Chain Reaction , Retinitis Pigmentosa/ethnology , Retinitis Pigmentosa/pathology
16.
Invest Ophthalmol Vis Sci ; 46(6): 2100-6, 2005 Jun.
Article in English | MEDLINE | ID: mdl-15914629

ABSTRACT

PURPOSE: To identify the disease locus for autosomal recessive congenital cataracts in consanguineous Pakistani families. METHODS: Two Pakistani families were ascertained, patients were examined, blood samples were collected, and DNA was isolated. A genome-wide scan was performed using >382 polymorphic microsatellite markers on genomic DNA from affected and unaffected family members. Two-point lod scores were calculated, haplotypes were formed by inspection, and candidate genes were sequenced. Real-time quantitative PCR techniques were used to determine the mRNA levels, and molecular modeling was performed to gain a better understanding of the significance of the disease-causing mutation. RESULTS: In the genome-wide scan, maximum lod scores of 2.67 and 2.77 for family 60004 and 2.02 and 2.04 for family 60006 were obtained for markers D22S539 and D22S315, respectively. The linked region, 22.7 cM (10 Mb) flanked by markers D22S420 and D22S1163, contains the beta-crystallin gene cluster including the genes CRYBA4, CRYBB1, CRYBB2, and CRYBB3. Sequencing of these genes showed a G-->C transition in exon 6 of CRYBB3 resulting in a p.G165R change in the betaB3-crystallin protein that cosegregates with the disease in both families. Real-time PCR analysis suggested that betaB3-crystallin mRNA levels approximate those of other betagamma-crystallins. Molecular modeling predicted changes in electrostatic potential that would be expected to reduce the stability of the fourth Greek-key motif, and hence the entire protein, dramatically. CONCLUSIONS: For the first time, a mutation in CRYBB3 is reported in two consanguineous Pakistani families with autosomal recessive congenital cataracts.


Subject(s)
Cataract/genetics , Crystallins/genetics , Mutation , Amino Acid Sequence , Cataract/congenital , Cataract/ethnology , Consanguinity , DNA Mutational Analysis , Female , Genes, Recessive , Genetic Linkage , Genotype , Humans , Lod Score , Male , Models, Molecular , Molecular Sequence Data , Pakistan/epidemiology , Pedigree , RNA, Messenger/metabolism , Reverse Transcriptase Polymerase Chain Reaction , beta-Crystallin B Chain
17.
Mol Vis ; 10: 884-9, 2004 Nov 17.
Article in English | MEDLINE | ID: mdl-15570217

ABSTRACT

PURPOSE: To map the locus for autosomal recessive retinitis pigmentosa in a large Pakistani family and to determine the causative mutation. METHODS: A large family with multiple individuals affected by autosomal recessive retinitis pigmentosa was ascertained in the Punjab province of Pakistan as part of an ongoing project between the CEMB, Lahore, Pakistan and the NEI to identify genetic causes of eye diseases. After initial analysis of previously identified autosomal recessive retinitis pigmentosa loci, a genome wide scan was performed using microsatellite markers at about 10 cM intervals. Two point lod scores were calculated and haplotypes were analyzed in order to define disease locus. Bidirectional dideoxynucleotide sequencing was used to screen for mutations in candidate genes. RESULTS: In the genome wide scan, autosomal recessive retinitis pigmentosa in this Pakistani family showed linkage to an 11.7 cM region of chromosome 4p12 between D4S405 and D4S1592 with a maximum lod score of 2.90 with D4S405 at theta;=0.01 Sequence analysis of CNGA1 identified a 2 bp deletion in exon 8: c.626_627delTA resulting in a frameshift, p.Ser209fsX26 in the translated protein. This mutation results in deletion of the COOH terminal 482 of 690 total amino acids in CNGA1 and their replacement by 25 novel amino acids before a premature termination. The mutation is found in a homozygous state in all 7 affected individuals and was heterozygous in all 15 unaffected family members examined. The mutant allele of CNGA1 itself shows linkage to the disease with maximum lod score of 4.43 at theta;=0. CONCLUSIONS: The autosomal recessive retinitis pigmentosa in this family is caused by a mutation in CNGA1 gene. To our knowledge, this is the first report in which both linkage analysis and identification of a mutation support CNGA1 as a cause for autosomal recessive retinitis pigmentosa.


Subject(s)
Chromosome Mapping , Eye Proteins/genetics , Frameshift Mutation , Ion Channels/genetics , Retinitis Pigmentosa/genetics , Base Sequence , Consanguinity , Cyclic Nucleotide-Gated Cation Channels , DNA Primers/chemistry , Female , Genes, Recessive , Genetic Linkage , Genotype , Humans , Male , Pakistan/epidemiology , Pedigree , Retinitis Pigmentosa/ethnology , Retinitis Pigmentosa/pathology , Sequence Analysis, DNA , Sequence Deletion
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