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1.
Clin Microbiol Infect ; 22(6): 564.e1-9, 2016 Jun.
Article in English | MEDLINE | ID: mdl-26939538

ABSTRACT

Most attention is given to seasonal influenza and respiratory syncytial virus outbreaks, but the cumulative burden caused by other respiratory viruses (RV) is not widely considered. The aim of the present study is to describe the circulation of RV in the general population during six consecutive seasons from 2006 to 2012 in Catalonia, Spain. Cell culture, immunofluorescence and PCR-based assays were used for the RV laboratory-confirmation and influenza subtyping. Phylogenetic and molecular characterizations of viral haemagglutinin, partial neuraminidase and matrix 2 proteins were performed from a representative sampling of influenza viruses. A total of 6315 nasopharyngeal samples were collected, of which 64% were laboratory-confirmed, mainly as influenza A viruses and rhinoviruses. Results show the significant burden of viral aetiological agents in acute respiratory infection, particularly in the youngest cases. The study of influenza strains reveals their continuous evolution through either progressive mutations or by segment reassortments. Moreover, the predominant influenza B lineage was different from that included in the recommended vaccine in half of the studied seasons, supporting the formulation and use of a quadrivalent influenza vaccine. Regarding neuraminidase inhibitors resistance, with the exception of the 2007/08 H275Y seasonal A(H1N1) strains, no other circulating influenza strains carrying known resistance genetic markers were found. Moreover, all circulating A(H1N1)pdm09 and A(H3N2) strains finally became genetically resistant to adamantanes. A wide knowledge of the seasonality patterns of the RV in the general population is well-appreciated, but it is a challenge due to the unpredictable circulation of RV, highlighting the value of local and global RV surveillance.


Subject(s)
Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/virology , Virus Diseases/epidemiology , Virus Diseases/virology , Viruses/isolation & purification , Adolescent , Adult , Aged , Child , Child, Preschool , Epidemiological Monitoring , Evolution, Molecular , Female , Fluorescent Antibody Technique , Humans , Infant , Male , Middle Aged , Molecular Epidemiology , Nasopharynx/virology , Polymerase Chain Reaction , Spain/epidemiology , Virus Cultivation , Viruses/classification , Young Adult
2.
Antimicrob Agents Chemother ; 54(7): 2781-6, 2010 Jul.
Article in English | MEDLINE | ID: mdl-20421394

ABSTRACT

This study evaluated the daptomycin activity against two methicillin-resistant Staphylococcus epidermidis (MRSE) clinical isolates with different vancomycin susceptibilities: MRSE-375, with a vancomycin MIC of 2 microg/ml, and NRS6, a glycopeptide-intermediate S. epidermidis (GISE) strain with a vancomycin MIC of 8 microg/ml. The in vivo activity of daptomycin at two different doses (standard dose [SD-daptomycin], 6 mg/kg of body weight/day intravenously [i.v.]; high dose [HD-daptomycin], 10 mg/kg/day i.v.) was evaluated in a rabbit model of infective endocarditis and compared with that of a standard dose of vancomycin (SD-vancomycin; 1 g i.v. every 12 h) for 2 days. For the MRSE-375 strain, high-dose vancomycin (HD-vancomycin; 1 g i.v. every 6 h) was also studied. For MRSE-375, SD- and HD-daptomycin therapy sterilized significantly more vegetations than SD-vancomycin therapy (9/15 [60%] and 11/15 [73%] vegetations, respectively, versus 3/16 [19%] vegetations; P = 0.02 and P = 0.002, respectively). HD-daptomycin sterilized more vegetations than HD-vancomycin (11/15 [73%] versus 5/15 [33%] vegetations; P = 0.03) and was more effective than SD- and HD-vancomycin in reducing the density of bacteria in valve vegetations (0 log(10) CFU/g vegetation [interquartile range {IQR}, 0 to 1 log(10) CFU/g vegetation] versus 2 log(10) CFU/g vegetation [IQR, 2 to 2 log(10) CFU/g vegetation] and 2 log(10) CFU/g vegetation [IQR, 0 to 2.8 log(10) CFU/g vegetation]; P = 0.002 and P = 0.01, respectively). For the NRS6 strain, SD- and HD-daptomycin were significantly more effective than vancomycin in reducing the density of bacteria in valve vegetations (3.7 log(10) CFU/g vegetation [IQR, 2 to 6 log(10) CFU/g vegetation] versus 7.1 log(10) CFU/g vegetation [IQR, 5.2 to 8.5 log(10) CFU/g vegetation]; P = 0.02). In all treatment arms, isolates recovered from vegetations remained susceptible to daptomycin and vancomycin and had the same MICs. In conclusion, daptomycin at doses of 6 mg/kg/day or 10 mg/kg/day is more effective than vancomycin for the treatment of experimental endocarditis due to MRSE and GISE.


Subject(s)
Daptomycin/therapeutic use , Endocarditis/drug therapy , Glycopeptides/therapeutic use , Staphylococcus epidermidis/drug effects , Animals , Daptomycin/pharmacokinetics , Humans , Methicillin Resistance/drug effects , Microbial Sensitivity Tests , Rabbits , Staphylococcal Infections/drug therapy , Staphylococcal Infections/microbiology , Staphylococcus epidermidis/pathogenicity , Vancomycin/pharmacology , Vancomycin/therapeutic use
3.
Antimicrob Agents Chemother ; 53(10): 4172-7, 2009 Oct.
Article in English | MEDLINE | ID: mdl-19620326

ABSTRACT

This study evaluated the activity of daptomycin combined with either gentamicin or rifampin against three methicillin-resistant Staphylococcus aureus (MRSA) clinical isolates in vitro and one isolate in vivo against a representative strain (MRSA-572). Time-kill experiments showed that daptomycin was bactericidal against these strains at concentrations over the MIC. Daptomycin at sub-MIC concentrations plus gentamicin at 1x and 2x the MIC yielded synergy, while the addition of rifampin at 2 to 4 microg/ml resulted in indifference (two strains) or antagonism (one strain). The in vivo activity of daptomycin (6 mg/kg of body weight once a day) was evaluated +/- gentamicin (1 mg/kg intravenously [i.v.] every 8 h [q8h]) or rifampin (300 mg i.v. q8h) in a rabbit model of infective endocarditis by simulating human pharmacokinetics. Daptomycin plus gentamicin (median, 0 [interquartile range, 0 to 2] log10 CFU/g vegetation) was as effective as daptomycin alone (0 [0 to 2] log10 CFU/g vegetation) in reducing the density of bacteria in valve vegetations (P = 0.83), and both were more effective than daptomycin plus rifampin (3 [2 to 3.5] log10 CFU/g vegetation; P < 0.05) for the strain studied. In addition, daptomycin sterilized a ratio of vegetations that was similar to that of daptomycin plus gentamicin (10/15 [67%] versus 9/15 [60%]; P = 0.7), and both regimens did so more than daptomycin plus rifampin (3/15 [20%]; P = 0.01 and P = 0.02, respectively). No statistical difference was noted between daptomycin plus gentamicin and daptomycin alone for MRSA treatment. In the combination arm, all isolates from vegetations remained susceptible to daptomycin, gentamicin, and rifampin. Sixty-one percent of the isolates (8/13) acquired resistance to rifampin during monotherapy. In the daptomycin arm, resistance was detected in only one case, in which the daptomycin MIC rose to 2 microg/ml among the recovered bacteria. In conclusion, the addition of gentamicin or rifampin does not enhance the effectiveness of daptomycin in the treatment of experimental endocarditis due to MRSA.


Subject(s)
Anti-Bacterial Agents/therapeutic use , Daptomycin/therapeutic use , Gentamicins/therapeutic use , Methicillin-Resistant Staphylococcus aureus/pathogenicity , Animals , Endocarditis, Bacterial/drug therapy , Endocarditis, Bacterial/microbiology , Humans , Methicillin-Resistant Staphylococcus aureus/drug effects , Microbial Sensitivity Tests , Rabbits
4.
J Med Virol ; 80(4): 711-5, 2008 Apr.
Article in English | MEDLINE | ID: mdl-18297697

ABSTRACT

Fifty million people are estimated to travel from industrial countries to the tropics annually. In spite of exhaustive studies and widely different diagnosis among returned patients, some cases of febrile illnesses remain without an etiological diagnosis, suggesting that these cases could be due to viral respiratory tract infections. From August 2005 to October 2006, 118 febrile patients without a specific diagnosis in their first visit at the Center for International Health of the Hospital Clínic of Barcelona were included. In all of them, in order to study respiratory viruses, a nasopharyngeal swab was collected. Clinical and radiological features and epidemiological data, as well as other samples for microbiologic studies, were also collected during consultation. Based on the physician's judgment at the time of consultation, patients were classified into four groups: respiratory symptoms (62%), febrile syndrome with nonspecific symptoms (24%), digestive symptoms (10%), and patients presenting both respiratory and digestive symptoms (4%). A pathogen microorganism was detected in 61 patients (52%). Respiratory viruses were detected in 44 out of 118 (37%) travelers included in the study, representing 56% of the patients with respiratory symptoms. The most frequently viruses detected were influenza virus (38%), rhinovirus (23%), adenovirus (9%), and respiratory syncytial virus (9%). Respiratory viruses have been shown to play an important role in imported fever. In light of the fact that international tourism is an increasing phenomenon, new strategies to prevent the spread of respiratory viruses should be considered, specially for influenza when a vaccine is available.


Subject(s)
Respiratory Tract Infections/virology , Virus Diseases/diagnosis , Virus Diseases/virology , Viruses/classification , Viruses/isolation & purification , Adult , Female , Fever , Humans , Male , Pharynx/virology , Respiratory Tract Infections/epidemiology , Respiratory Tract Infections/physiopathology , Spain/epidemiology , Travel , Virus Diseases/epidemiology
5.
J Clin Microbiol ; 46(3): 1123-5, 2008 Mar.
Article in English | MEDLINE | ID: mdl-18160454

ABSTRACT

Neonatal meningitis and septicemia caused by Escherichia coli are still major health problems in industrialized countries. Forty-seven E. coli strains causing neonatal sepsis were analyzed. Twenty-two and 25 strains caused early (detected from 0 to 3 days after birth) and late (detected from 4 to 28 days after birth) infections, respectively. Only the ibeA gene was significantly more prevalent in the strains causing early infections.


Subject(s)
Escherichia coli Infections/microbiology , Escherichia coli/isolation & purification , Escherichia coli/pathogenicity , Infant, Premature, Diseases/microbiology , Sepsis/microbiology , Virulence Factors/genetics , Escherichia coli/genetics , Escherichia coli Proteins/genetics , Humans , Infant, Low Birth Weight , Infant, Newborn , Infant, Premature , Infant, Very Low Birth Weight , Meningitis, Escherichia coli/microbiology , Phylogeny , Time Factors , Virulence
6.
Eur Respir J ; 31(3): 618-24, 2008 Mar.
Article in English | MEDLINE | ID: mdl-17959637

ABSTRACT

Community-acquired pneumonia (CAP) is a serious lower respiratory tract infection associated with significant morbidity and mortality in immunocompromised patients. The present study evaluated the clinical spectrum of CAP in immunocompromised hosts and the role of respiratory viruses, as well as the yield of viral diagnostic methods. Conventional microbiological tests were routinely performed in immunocompromised patients with CAP. Nasopharyngeal swabs were processed for respiratory viruses by indirect immunofluorescence assay, cell culture and PCR. Four groups were defined according to aetiology of CAP, as follows: group 1 (nonviral), group 2 (mixed, nonviral and viral), group 3 (only viral) and group 4 (unknown aetiology). Over a 1-yr period, 92 patients were included. An aetiological diagnosis was achieved in 61 (66%) patients: 38 (41%), group 1; 12 (13%), group 2; and 11 (12%), group 3. The most frequent pathogen detected was Streptococcus pneumoniae (n = 29, 48%), followed by rhinovirus (n = 11, 18%). PCR identified 95% of respiratory viruses. Clinical characteristics could not reliably distinguish among the different aetiological groups. Respiratory viruses represent a substantial part of the aetiologies of community-acquired pneumonia in immunocompromised patients and its routine assessment through PCR in nasopharyngeal swabs should be considered in the clinical care of these patients.


Subject(s)
Immunocompromised Host , Pneumonia, Viral/epidemiology , Pneumonia, Viral/immunology , Adult , Aged , Community-Acquired Infections/diagnosis , Community-Acquired Infections/epidemiology , Community-Acquired Infections/immunology , Community-Acquired Infections/virology , Female , Humans , Male , Middle Aged , Nasopharynx/microbiology , Nasopharynx/virology , Pneumonia, Pneumococcal/epidemiology , Pneumonia, Pneumococcal/immunology , Pneumonia, Viral/diagnosis , Polymerase Chain Reaction , Prospective Studies , Spain/epidemiology
8.
Antimicrob Agents Chemother ; 50(2): 649-53, 2006 Feb.
Article in English | MEDLINE | ID: mdl-16436722

ABSTRACT

Escherichia coli is the most common microorganism causing urinary tract infections. Quinolone-resistant E. coli strains have fewer virulence factors than quinolone-susceptible strains. Several urovirulence genes are located in pathogenicity islands (PAIs). We investigated the capacity of quinolones to induce loss of virulence factors such as hemolysin, cytotoxic necrotizing factor 1, P fimbriae, and autotransporter Sat included in PAIs in three uropathogenic E. coli strains. In a multistep selection, all strains lost hemolytic capacity at between 1 and 4 passages when they were incubated with subinhibitory concentrations of ciprofloxacin, showing a partial or total loss of the PAI containing the hly (hemolysin) and cnf-1 (cytotoxic necrotizing factor 1) genes. RecA(-) mutants were obtained from the two E. coli strains with partial or total loss of the PAI. The inactivation of the RecA protein affected only the partial loss of the PAI induced by quinolones. No spontaneous loss of PAIs was observed on incubation in the absence of quinolones in either the wild-type or mutant E. coli strains. Quinolones induce partial or total loss of PAIs in vitro in uropathogenic E. coli by SOS-dependent or -independent pathways, respectively.


Subject(s)
Anti-Infective Agents/pharmacology , Ciprofloxacin/pharmacology , Escherichia coli/drug effects , Genomic Islands/drug effects , SOS Response, Genetics/physiology , Drug Resistance, Bacterial , Electrophoresis, Gel, Pulsed-Field , Escherichia coli/pathogenicity , Hemolysis/drug effects , Microbial Sensitivity Tests
9.
Clin Microbiol Infect ; 11(1): 71-3, 2005 Jan.
Article in English | MEDLINE | ID: mdl-15649309

ABSTRACT

Amikacin-resistant Escherichia coli strains are isolated rarely from clinical samples. In the present study, investigation of an amikacin-resistant clinical isolate of E. coli demonstrated the presence of two class 1 integrons carrying the aacA4 gene plus the aacA7 gene, and the dfrA17 gene plus the aadA5 gene, respectively. Resistance to amikacin in this E. coli isolate was related to the presence of both aacA4 and aacA7.


Subject(s)
Amikacin/pharmacology , Anti-Bacterial Agents/pharmacology , Drug Resistance, Bacterial , Escherichia coli Proteins/genetics , Escherichia coli/drug effects , Escherichia coli/isolation & purification , Amikacin/therapeutic use , Anti-Bacterial Agents/therapeutic use , Drug Resistance, Bacterial/genetics , Escherichia coli/genetics , Escherichia coli Infections/drug therapy , Escherichia coli Infections/microbiology , Humans , Integrons/genetics , Microbial Sensitivity Tests , Pseudomonas Infections/drug therapy , Pseudomonas Infections/microbiology , Pseudomonas aeruginosa/drug effects , Recurrence , Respiratory Tract Infections/drug therapy , Respiratory Tract Infections/microbiology , Tobramycin/pharmacology , Tobramycin/therapeutic use
10.
Rev Esp Quimioter ; 17(2): 169-76, 2004 Jun.
Article in Spanish | MEDLINE | ID: mdl-15470511

ABSTRACT

The Phoenix system (BD Diagnostic Systems), a rapid ID/AST system, was compared with the MicroScan WalkAway-40 system for accuracy of identification and antimicrobial susceptibility test results. The 327 bacterial isolates, were comprised of 191 Gram-negative bacilli (187 Enterobacteriaceae and 4 Aeromonas spp.) and 136 Gram-positive cocci (27 Staphylococcus aureus, 53 coagulase-negative staphylococci, 45 enterococci and 11 beta haemolytic streptococci). The overall rate of agreement between the two systems for species level identification was 95.8% and 96.3% for Gram-negative bacilli and Gram-positive cocci, respectively. Enterococcus and Streptococcus species both achieved a 100% rate of species level agreement. The genus level agreement was >99% overall. Arbitration of the 8 Gram-negative bacilli disagreements resolved with 7 in agreement with the Phoenix identification. For the 5 Gram-positive cocci disagreements, 3 resolved in agreement with Phoenix. Overall, 3688 antimicrobial/organism combinations were evaluated in both systems. For Gram-negative isolates, the rate of essential agreement for the MICs was 98.5%, while the categorical agreement rate was 95.9%. Arbitration of 13 Gram-negative disagreements resolved with 11 in agreement with the Phoenix system. For Staphylococcus spp. and Enterococcus spp. isolates, the essential agreement rates were 96.4% and 99% respectively. Categorical agreement rates for both genera were 94.7% and 96.1%, respectively. Arbitration of 5 staphylococci disagreements resolved with 2 in agreement with Phoenix system. Our results show that the Phoenix system is a rapid and reliable system for both identification and antimicrobial susceptibility testing of common clinical isolates.


Subject(s)
Microbial Sensitivity Tests , Drug Resistance, Bacterial , Enterobacteriaceae/drug effects , Enterobacteriaceae/isolation & purification , Enterococcus/drug effects , Enterococcus/isolation & purification , Staphylococcus/drug effects , Staphylococcus/isolation & purification
11.
Clin Infect Dis ; 39(7): e70-3, 2004 Oct 01.
Article in English | MEDLINE | ID: mdl-15472836

ABSTRACT

Conventional antifungal therapy for fungal endocarditis has been associated with a poor cure rate. Therefore, combined medical and surgical therapy has been recommended. However, new potent antifungal agents, such as echinocandins, could increase the medical options and, in some cases, avoid the need for surgery. We report a case of Candida endocarditis treated successfully without valve replacement with intravenous liposomal amphotericin B (total dose, 4 g) and intravenous caspofungin (a 100-mg loading dose followed by 50 mg per day for 8 weeks) as induction therapy and intravenous caspofungin (100 mg 3 times per week for 12 weeks) as maintenance therapy.


Subject(s)
Candida glabrata , Candidiasis/diagnosis , Endocarditis/drug therapy , Endocarditis/microbiology , Peptides, Cyclic/therapeutic use , Aged, 80 and over , Amphotericin B/therapeutic use , Antifungal Agents/therapeutic use , Candidiasis/microbiology , Caspofungin , Drug Therapy, Combination , Echinocandins , Female , Humans , Lipopeptides
12.
Rev. esp. quimioter ; 17(2): 169-176, jun. 2004.
Article in Es | IBECS | ID: ibc-34905

ABSTRACT

Se evalúa el nuevo sistema Phoenix (BD Diagnostic Systems), en comparación con el sistema Microscan WalkAway-40, para identificar y determinar la sensibilidad a los antimicrobianos de aislamientos clínicos habituales. Del total de los 327 microorganismos estudiados, 191 eran bacilos gramnegativos (187 de la familia Enterobacteriaceae y 4 Aeromonas spp.) y 136 cocos grampositivos (27 Staphylococcus aureus, 53 estafilococos coagulasa negativos, 45 enterococos y 11 estreptococos beta hemolíticos). La concordancia entre los dos sistemas con los bacilos gramnegativos y los cocos grampositivos fue del 95,8 por ciento y el 96,3 por ciento, respectivamente. El grado de concordancia con Enterococcus spp. y Streptococcus spp. fue del 100 por ciento. Globalmente, el grado de concordancia en cuanto a género fue >99 por ciento. En siete de las ocho discrepancias observadas en los bacilos gramnegativos, el resultado del sistema Phoenix era correcto, mientras que, en los cocos grampositivos, en tres de las cinco discrepancias el sistema Phoenix era el correcto. Se analizaron un total de 3688 combinaciones de antibiótico y microorganismo con ambos sistemas. Para los bacilos gramnegativos, la concordancia esencial de los resultados de CMI fue del 98,5 por ciento, mientras que la concordancia de categoría fue del 95,9 por ciento. De las 13 discrepancias observadas, los resultados del sistema Phoenix eran correctos en 11.En los géneros Staphylococcus y Enterococcus, la concordancia esencial fue del 96,4 por ciento y el 99 por ciento, respectivamente, y la concordancia de categoría del 94,7 por ciento y el 96,1 por ciento, respectivamente. Se observaron cinco discrepancias en Staphylococcus, que se resolvieron a favor del sistema Phoenix en dos ocasiones. Estos resultados indican que el sistema Phoenix es rápido y fiable para identificar y determinar la sensibilidad a los antibióticos de los microorganismos aislados en el trabajo diario de un laboratorio de microbiología clínica (AU)


Subject(s)
Microbial Sensitivity Tests , Enterococcus , Drug Resistance, Bacterial , Enterobacteriaceae , Staphylococcus
13.
J Antimicrob Chemother ; 53(6): 1068-71, 2004 Jun.
Article in English | MEDLINE | ID: mdl-15117921

ABSTRACT

OBJECTIVES: The aim of this study was to determine the roles of mutations in the gyrA and parC genes and the overexpression of efflux pump(s) as mechanisms of resistance to quinolones. Forty-five Yersinia enterocolitica O:3 clinical isolates (41 nalidixic acid-resistant, three nalidixic acid-susceptible and one nalidixic acid-resistant strain obtained in vitro) were analysed. RESULTS: All the nalidixic acid-resistant strains showed mutations in the gyrA gene and none in the parC gene. The presence of the inhibitor produced decreases in the MIC values of nalidixic acid by two to six serial dilution steps in 37 of the 41 nalidixic acid-resistant strains. Meanwhile, the MIC value of ciprofloxacin was affected in two strains whose values diminished three serial dilution steps. The nalidixic acid-resistant mutant obtained in vitro was also affected by the inhibitor decreasing the MIC value of nalidixic acid three serial dilutions steps whereas the MICs for the nalidixic acid-susceptible strains were not affected. CONCLUSIONS: Our results show that the high level of resistance to nalidixic acid is likely due to an overexpression of an efflux pump plus a mutation in the gyrA gene, whereas decreased susceptibility to ciprofloxacin is only associated with the presence of a mutation in the gyrA gene.


Subject(s)
Anti-Infective Agents/pharmacology , Quinolones/pharmacology , Yersinia enterocolitica/drug effects , Yersinia enterocolitica/genetics , Ciprofloxacin/pharmacology , DNA Gyrase/genetics , DNA Topoisomerase IV/genetics , Dipeptides/pharmacology , Drug Resistance, Bacterial , Humans , Microbial Sensitivity Tests , Mutation/genetics , Nalidixic Acid/pharmacology , Spain , Yersinia Infections/microbiology
14.
Int J Tuberc Lung Dis ; 8(1): 15-22, 2004 Jan.
Article in English | MEDLINE | ID: mdl-14974741

ABSTRACT

SETTING: Five districts in Equatorial Guinea, March 1999 to February 2001. OBJECTIVES: To determine tuberculosis drug resistance among new and previously treated cases, the risk factors associated with resistance, and the mutations associated with isoniazid and rifampicin (katG, inhA and rpoB genes) resistance, and to genotype resistant strains. RESULTS: A positive culture identified as Mycobacterium tuberculosis complex was obtained in 240/499 patients. Susceptibility testing was performed in 236 strains. The overall resistance rate in new cases was 16.9% compared to 41.6% in previously treated cases. Isoniazid resistance was the most frequent (respectively 12.5% and 16.6%) in the two groups, while multidrug resistance was observed in 1.7% and 25% of new and previously treated cases, respectively. Female sex was statistically associated with resistance in new cases. Of 41 isoniazid-resistant strains, 33 (80.5%) had mutations in the inhA gene; none had mutations in the katG gene and eight had no mutations in either gene. All strains had low-level isoniazid resistance. Of eight strains resistant to rifampicin, six had mutations in the rpoB gene. Genotyping defined seven clusters. CONCLUSIONS: Moderate resistance was found in new cases. Low-level isoniazid resistance predominated among mutations in the inhA gene, with a high percentage of clustering in resistant strains.


Subject(s)
Antitubercular Agents/therapeutic use , Mycobacterium tuberculosis/drug effects , Tuberculosis, Multidrug-Resistant/drug therapy , Tuberculosis, Multidrug-Resistant/epidemiology , Adolescent , Adult , Age Distribution , Aged , Aged, 80 and over , Antitubercular Agents/pharmacology , Chi-Square Distribution , Child , Child, Preschool , Cohort Studies , Developing Countries , Drug Resistance, Bacterial , Female , Genotype , Guinea/epidemiology , Humans , Incidence , Male , Microbial Sensitivity Tests , Middle Aged , Molecular Epidemiology , Mutation , Pharmacogenetics , Probability , Risk Factors , Sex Distribution , Survival Analysis , Tuberculosis/diagnosis , Tuberculosis/drug therapy , Tuberculosis/epidemiology , Tuberculosis/genetics , Tuberculosis, Multidrug-Resistant/diagnosis , Tuberculosis, Multidrug-Resistant/genetics
15.
Int J Tuberc Lung Dis ; 8(12): 1458-63, 2004 Dec.
Article in English | MEDLINE | ID: mdl-15636492

ABSTRACT

SETTING: Bata and Malabo districts, Equatorial Guinea, 1 March 1999 to 28 February 2001. OBJECTIVE: To study the molecular epidemiology of tuberculosis (TB). RESULTS: During the study period, 429 patients were diagnosed with TB in the Bata and Malabo districts. A positive culture was obtained in 206 (48%) TB patients, with RFLP analysis being performed in 185 (89.8%). Ninety-two different patterns were identified. Single patterns were found in 71 strains (38.3%) and the remaining 114 strains (61.6%) were classified into 21 clusters (of 2 to 25 patients). In addition, 37 of the typing strains were resistant to one or more anti-tuberculosis drugs, and 30 were included in clusters (81%), with 21 low level isoniazid (MIC < or = 1 microg/ml) resistance strains in the same cluster. Statistical analysis showed that resistance to anti-tuberculosis drugs (OR 3.1; 95% CI 1.2-7.6; P = 0.014), and positive smear results (4+ grade smear) (OR 4.3; 95% CI 1.5-12; P = 0.005), were significantly more frequent among patients with clustered strains. No epidemiological links were related to clustering. CONCLUSIONS: The level of clustering (61.6%) observed suggests a high degree of recent transmission and a predominance of determined patterns of Mycobacterium tuberculosis strains among the population of Equatorial Guinea.


Subject(s)
Mycobacterium tuberculosis/genetics , Tuberculosis, Pulmonary/epidemiology , Adult , Equatorial Guinea/epidemiology , Female , Humans , Male , Molecular Epidemiology , Risk Factors , Surveys and Questionnaires , Tuberculosis, Pulmonary/microbiology
16.
Clin Microbiol Infect ; 9(9): 907-11, 2003 Sep.
Article in English | MEDLINE | ID: mdl-14616677

ABSTRACT

OBJECTIVE: To determine whether non-epidemiologically related, antibiotic-resistant isolates of Acinetobacter baumannii from different geographical origins possess common type 1 integrons. METHODS: The epidemiologic relationships between seven A. baumannii strains recovered from different Spanish hospitals were established by pulsed-field gel electrophoresis, the presence of integrons being determined by PCR and DNA sequencing. RESULTS: Integron analysis showed the presence of four different integrons, containing six different known genes (aacC1, aacA4, aadA1, aadB, oxa21 and oxa37) plus an ORF. It was found that the same integron was present in different unrelated strains and that related strains could have different integrons. CONCLUSION: These results show the potential risk of integron dissemination among different strains of A. baumannii.


Subject(s)
Acinetobacter baumannii/drug effects , Acinetobacter baumannii/genetics , Drug Resistance, Multiple, Bacterial/genetics , Integrons/genetics , Acinetobacter Infections/microbiology , DNA, Bacterial/chemistry , DNA, Bacterial/genetics , Electrophoresis, Gel, Pulsed-Field , Humans , Microbial Sensitivity Tests , Phylogeny , Polymerase Chain Reaction , Sequence Analysis, DNA , Spain
17.
Diagn Microbiol Infect Dis ; 46(4): 259-64, 2003 Aug.
Article in English | MEDLINE | ID: mdl-12944017

ABSTRACT

The frequency of isolation and antifungal susceptibility patterns to established and two new antifungal agents were determined for 218 Candida spp isolates causing bloodstream infection from 1996 to 2001. Overall, 41.7% of the candidemias were due to C. albicans, followed by C. parapsilosis (22%), C. tropicalis (16.1%), C. glabrata (11.9%), C. krusei (6%) and miscellaneous Candida spp (2.3%). Isolates of C. albicans C. parapsilosis and C. tropicalis (80% of isolates) were highly susceptible to fluconazole (94 to 100% at /= 32 microg/ml).


Subject(s)
Antifungal Agents/pharmacology , Candida/drug effects , Candidiasis/blood , Fungemia/blood , Peptides, Cyclic/pharmacology , Pyrimidines/pharmacology , Triazoles/pharmacology , Anidulafungin , Candida/classification , Drug Resistance, Fungal , Echinocandins , Female , Hospitals, University , Humans , Male , Microbial Sensitivity Tests/statistics & numerical data , Microbial Sensitivity Tests/trends , Retrospective Studies , Sensitivity and Specificity , Spain , Voriconazole
18.
Eur Respir J ; 21(2): 209-14, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12608431

ABSTRACT

Streptococcus pneumoniae is suspected to cause an important proportion of community-acquired pneumonia (CAP) whose aetiology cannot be detected with conventional tests. In this study, the authors evaluated the diagnostic yield of a new immunochromatographic membrane test (ICT) for the detection of the S. pneumoniae antigen in the urine of patients admitted with diagnosed CAP. ICT was performed in unconcentrated and concentrated urine from all the patients. ICT was repeated 1 month after discharge in a group initially testing positive. The authors also studied the ICT in clinically stable human immunodeficiency virus type 1 (HIV1)-infected patients. S. pneumoniae antigen was detected in all of the 68 (100%) patients tested with definitive pneumococcal pneumonia. In five of these cases ICT was only positive when it had been performed on the patients. The S. pneumoniae antigen was also detected in 36 (69.2%) of 52 patients with probable pneumococcal pneumonia and in 50 of 277 (18%) patients without pneumococcal pneumonia. ICT remained positive in 16 (69.5%) of 23 patients, 1 month after hospital discharge. Nasopharyngeal colonisation with S. pneumoniae was detected in 8 (12%) of 68 clinically stable HIV1 infected patients, but none tested ICT positive. The Binax NOW it immunochromatographic membrane test is a rapid, sensitive and specific test for detecting pneumococcal community-acquired pneumonia in adults. The test may remain positive for several weeks after pneumococcal pneumonia.


Subject(s)
Antigens, Bacterial/isolation & purification , Community-Acquired Infections/diagnosis , Community-Acquired Infections/urine , Pneumonia, Pneumococcal/diagnosis , Pneumonia, Pneumococcal/urine , Streptococcus pneumoniae/isolation & purification , Acquired Immunodeficiency Syndrome/microbiology , Acquired Immunodeficiency Syndrome/urine , Adult , Aged , Aged, 80 and over , Chromatography , Community-Acquired Infections/microbiology , Female , HIV-1/isolation & purification , Humans , Immunologic Techniques , Male , Middle Aged , Nasopharynx/microbiology , Pneumonia, Pneumococcal/microbiology , Sensitivity and Specificity , Time Factors
19.
Eur Respir J ; 21(2): 303-7, 2003 Feb.
Article in English | MEDLINE | ID: mdl-12608445

ABSTRACT

The objective of this study was to describe a nosocomial outbreak of influenza during a period without influenza epidemic activity in the community. Outbreak investigation was carried out in an infectious diseases ward of a tertiary hospital. Presence of two or more of the following symptoms were used to define influenza: cough, sore throat, myalgia and fever. Epidemiological survey, direct immunofluorescence, viral culture, polymerase chain reaction, haemagglutination-inhibition test in throat swabs and serology for respiratory viruses were performed. Twenty-nine of 57 healthcare workers (HCW) (51%) and eight of 23 hospitalised patients (34%) fulfilled the case definition. Sixteen HCW (55%) and three inpatients (37%) had a definitive diagnosis of influenza A virus infection (subtype H1N1). Among the symptomatic HCW, 93% had not been vaccinated against influenza that season. Affected inpatients were isolated and admissions in the ward were cancelled for 2 weeks. Symptomatic HCW were sent home for 1 week. On the seventeenth day of the outbreak the last case was declared. The incidence of cases in this outbreak of influenza, which occurred during a period without influenza epidemic activity in the community, was notably high. Epidemiological data suggest transmission from healthcare workers to inpatients. Most healthcare workers were not vaccinated against influenza. Vaccination programmes should be reinforced among healthcare workers.


Subject(s)
Cross Infection/epidemiology , Disease Outbreaks , Influenza A virus , Influenza, Human/epidemiology , Influenza, Human/virology , Acquired Immunodeficiency Syndrome/complications , Adult , Cross Infection/etiology , Cross Infection/prevention & control , Cross Infection/transmission , Female , Health Personnel/statistics & numerical data , Humans , Incidence , Infection Control/methods , Infectious Disease Transmission, Professional-to-Patient , Influenza A virus/isolation & purification , Influenza, Human/prevention & control , Influenza, Human/transmission , Spain/epidemiology
20.
Rev Esp Quimioter ; 16(4): 398-402, 2003 Dec.
Article in Spanish | MEDLINE | ID: mdl-14961133

ABSTRACT

Antibiotic resistance in clinical isolates of Salmonella typhimurium has steadily risen in recent years. Some of the resistance genes may be carried into integrons. In this study, integrons, both from 10 epidemiologically related and unrelated S. typhimurium clinical isolates, were characterized, showing that epidemiologically different strains can carry the same integron, and that epidemiologically related strain can carry different integrons. Among the resistance genes detected in this study were genes encoding b-lactamases (bla(oxa-30) in two strains, and bla(pse-1) in five strains, one of which was carrying this cassette in two different integrons); aminoglycoside-modifying enzymes (aadA2 in four strains, one of which was carrying this cassette in two different integrons, and aadA1 in six strains); as well dihydrofolate reductases (dfrAI in three strains).


Subject(s)
Integrons , Salmonella typhimurium/genetics , Drug Resistance, Bacterial , Humans , Salmonella typhimurium/isolation & purification
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