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1.
J Fish Biol ; 97(4): 1039-1050, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32658333

ABSTRACT

In the present study we evaluate the population structure and potential colonization routes of the silverside Chirostoma humboldtianum through approximate Bayesian computations. Six microsatellite loci were amplified in a total of 288 individuals from six different locations covering the complete geographic distribution of the species. Additionally, two mitochondrial DNA markers, a D loop control region and cytochrome b were amplified in a subset of 107 individuals. The results found with microsatellites allow recovering well-structured populations that have experienced a drastic reduction in the effective population size. On the other hand, mtDNA sequences showed a moderate phylogeographic structure with shared haplotypes between geographic localities and signalsof a slight increase in the effective population size. Finally, the approximate Bayesian computation analysis performed with both datasets suggested a west-to-east colonization route for the species in Central Mexico.


Subject(s)
Fishes/physiology , Genetics, Population , Phylogeography , Animals , Bayes Theorem , Cytochromes b/genetics , DNA, Mitochondrial/genetics , Fishes/classification , Fishes/genetics , Genetic Markers/genetics , Genetic Variation , Haplotypes , Mexico , Microsatellite Repeats/genetics , Population Density
2.
Mol Biol Rep ; 47(2): 943-952, 2020 Feb.
Article in English | MEDLINE | ID: mdl-31758495

ABSTRACT

The complete mitochondrial genomes of two important octopus species from the eastern Pacific were sequenced, obtaining their complete nucleotide sequences. Octopus mimus is the most important commercially catched species along the eastern Pacific, from Mexico to Chile, whereas 'Octopus' fitchi is a pigmy species with uncertain taxonomic genus. The mitogenomes of Octopus mimus and 'Octopus' fitchi were 15,696 and 15,780 base pairs (bp) in length with an A + T composition of 75.5% and 75.8%, respectively. Each genome contains 13 protein-coding genes, 22 tRNA genes, and two rRNA genes, as well as a control region. Gene order is maintained as reported for other species of the Octopodidae. The phylogenetic analysis based on the concatenated thirteen protein-coding genes confirms that O. mimus belongs to the genus Octopus, which is supported by the genetic distance (11-16%) whereas the position of 'O'. fitchi within this group it is not supported. The analysis also indicated that the phylogenetic position of 'O'. fitchi is closer to Callistoctopus than to the Cistopus or the Amphioctopus clades. Based on the tree topology and the high genetic distance observed (24-25%), we suggest that 'O'. fitchi might represent a different genus.


Subject(s)
DNA, Mitochondrial/genetics , Genome, Mitochondrial/genetics , Octopodiformes/genetics , Animals , Base Composition/genetics , Base Sequence/genetics , Gene Order , Mitochondria/genetics , Open Reading Frames , Pacific Ocean , Phylogeny , RNA, Ribosomal/genetics , RNA, Transfer/genetics
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