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1.
J Neuroinflammation ; 10: 49, 2013 Apr 22.
Article in English | MEDLINE | ID: mdl-23607899

ABSTRACT

BACKGROUND: Experimental autoimmune encephalomyelitis (EAE) is an animal model of multiple sclerosis characterized by entry of activated T cells and antigen presenting cells into the central nervous system and subsequent autoimmune destruction of nerve myelin. Previous studies revealed that non-selective inhibition of poly(ADP-ribose) polymerases (PARPs) 1 and 2 protect against neuroinflammation and motor dysfunction associated with EAE, but the role of the PARP-2 isoform has not yet been investigated selectively. RESULTS: EAE was induced in mice lacking PARP-2, and neurological EAE signs, blood-spine barrier (BSB) permeability, demyelination and inflammatory infiltration were monitored for 35 days after immunization. Mice lacking PARP-2 exhibited significantly reduced overall disease burden and peak neurological dysfunction. PARP-2 deletion also significantly delayed EAE onset and reduced BSB permeability, demyelination and central nervous system (CNS) markers of proinflammatory Th1 and Th17 T helper lymphocytes. CONCLUSIONS: This study represents the first description of a significant role for PARP-2 in neuroinflammation and neurological dysfunction in EAE.


Subject(s)
Encephalomyelitis, Autoimmune, Experimental/pathology , Inflammation/pathology , Nervous System Diseases/pathology , Poly(ADP-ribose) Polymerases/physiology , Animals , Blood-Nerve Barrier/physiology , Demyelinating Diseases/pathology , Encephalomyelitis, Autoimmune, Experimental/complications , Fluorescent Antibody Technique , Inflammation/etiology , Mice , Mice, Inbred C57BL , Mice, Knockout , Nervous System Diseases/etiology , Neutrophil Infiltration/physiology , Poly(ADP-ribose) Polymerases/genetics , T-Lymphocytes, Helper-Inducer/physiology , Th1 Cells/physiology
2.
J Cell Sci ; 122(Pt 12): 1990-2002, 2009 Jun 15.
Article in English | MEDLINE | ID: mdl-19454480

ABSTRACT

Poly(ADP-ribosyl)ation is a post-translational modification of proteins involved in the regulation of chromatin structure, DNA metabolism, cell division and cell death. Through the hydrolysis of poly(ADP-ribose) (PAR), Poly(ADP-ribose) glycohydrolase (PARG) has a crucial role in the control of life-and-death balance following DNA insult. Comprehension of PARG function has been hindered by the existence of many PARG isoforms encoded by a single gene and displaying various subcellular localizations. To gain insight into the function of PARG in response to irradiation, we constitutively and stably knocked down expression of PARG isoforms in HeLa cells. PARG depletion leading to PAR accumulation was not deleterious to undamaged cells and was in fact rather beneficial, because it protected cells from spontaneous single-strand breaks and telomeric abnormalities. By contrast, PARG-deficient cells showed increased radiosensitivity, caused by defects in the repair of single- and double-strand breaks and in mitotic spindle checkpoint, leading to alteration of progression of mitosis. Irradiated PARG-deficient cells displayed centrosome amplification leading to mitotic supernumerary spindle poles, and accumulated aberrant mitotic figures, which induced either polyploidy or cell death by mitotic catastrophe. Our results suggest that PARG could be a novel potential therapeutic target for radiotherapy.


Subject(s)
Glycoside Hydrolases/genetics , Mitosis/radiation effects , Radiation Tolerance/genetics , Centrosome/physiology , Centrosome/radiation effects , Chromosome Aberrations/radiation effects , DNA Breaks/radiation effects , DNA Repair/genetics , DNA Repair/radiation effects , Gene Knockdown Techniques , Glycoside Hydrolases/antagonists & inhibitors , HeLa Cells , Humans , Kinetochores/physiology , Kinetochores/radiation effects , Mitosis/genetics , Poly Adenosine Diphosphate Ribose/metabolism , RNA, Small Interfering/pharmacology , Telomere/radiation effects
3.
Nucleic Acids Res ; 37(10): 3177-88, 2009 Jun.
Article in English | MEDLINE | ID: mdl-19305001

ABSTRACT

Repair of single-stranded DNA breaks before DNA replication is critical in maintaining genomic stability; however, how cells deal with these lesions during S phase is not clear. Using combined approaches of proteomics and in vitro and in vivo protein-protein interaction, we identified the p58 subunit of DNA Pol alpha-primase as a new binding partner of XRCC1, a key protein of the single strand break repair (SSBR) complex. In vitro experiments reveal that the binding of poly(ADP-ribose) to p58 inhibits primase activity by competition with its DNA binding property. Overexpression of the XRCC1-BRCT1 domain in HeLa cells induces poly(ADP-ribose) synthesis, PARP-1 and XRCC1-BRCT1 poly(ADP-ribosyl)ation and a strong S phase delay in the presence of DNA damage. Addition of recombinant XRCC1-BRCT1 to Xenopus egg extracts slows down DNA synthesis and inhibits the binding of PCNA, but not MCM2 to alkylated chromatin, thus indicating interference with the assembly of functional replication forks. Altogether these results suggest a critical role for XRCC1 in connecting the SSBR machinery with the replication fork to halt DNA synthesis in response to DNA damage.


Subject(s)
DNA Primase/metabolism , DNA Repair , DNA Replication , DNA-Binding Proteins/metabolism , S Phase/genetics , Animals , Chromatin/metabolism , DNA/biosynthesis , DNA Damage , DNA Polymerase I/metabolism , DNA Primase/chemistry , DNA-Binding Proteins/chemistry , HeLa Cells , Humans , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/metabolism , Protein Interaction Domains and Motifs , X-ray Repair Cross Complementing Protein 1 , Xenopus laevis
4.
Autophagy ; 5(1): 61-74, 2009 Jan.
Article in English | MEDLINE | ID: mdl-19001878

ABSTRACT

Autophagy is a lysosome-dependent degradative pathway frequently activated in tumor cells treated with chemotherapy or radiation. PARP-1 has been implicated in different pathways leading to cell death and its inhibition potentiates chemotherapy-induced cell death. Whether PARP-1 participates in the cell's decision to commit to autophagy following DNA damage is still not known. To address this issue PARP-1 wild-type and deficient cells have been treated with a dose of doxorubicin that induces autophagy. Electron microscopy examination and GFP-LC3 transfection revealed autophagic vesicles and increased expression of genes involved in autophagy (bnip-3, cathepsin b and l and beclin-1) in wild-type cells treated with doxo but not in parp-1(-/-) cells or cells treated with a PARP inhibitor. Mechanistically the lack of autophagic features in PARP-1 deficient/PARP inhibited cells is attributed to prevention of ATP and NAD(+) depletion and to the activation of the key autophagy regulator mTOR. Pharmacological or genetical inhibition of autophagy results in increased cell death, suggesting a protective role of autophagy induced by doxorubicin. These results suggest that autophagy might be cytoprotective during the response to DNA damage and suggest that PARP-1 activation is involved in the cell's decision to undergo autophagy.


Subject(s)
Autophagy , DNA Damage , Poly(ADP-ribose) Polymerases/metabolism , 1-Naphthylamine/analogs & derivatives , 1-Naphthylamine/pharmacology , 3T3 Cells , Adenosine Triphosphate/deficiency , Animals , Apoptosis/drug effects , Apoptosis Regulatory Proteins , Autophagy/drug effects , Autophagy/genetics , Autophagy-Related Protein 5 , Beclin-1 , Cell Survival/drug effects , Doxorubicin/pharmacology , Enzyme Activation/drug effects , Gene Deletion , Mice , Microtubule-Associated Proteins/metabolism , Mitochondria/drug effects , Mitochondria/enzymology , Mitochondria/ultrastructure , Models, Biological , NAD/deficiency , Naphthalimides/pharmacology , Necrosis/enzymology , Poly(ADP-ribose) Polymerase Inhibitors , Protein Kinases/metabolism , Proteins/metabolism , Quinolones/pharmacology , Subcellular Fractions/drug effects , Subcellular Fractions/metabolism , TOR Serine-Threonine Kinases , Up-Regulation/drug effects
5.
J Biol Chem ; 282(52): 37738-46, 2007 Dec 28.
Article in English | MEDLINE | ID: mdl-17951580

ABSTRACT

The peroxisome proliferator-activated receptor-gamma (PPARgamma, NR1C3) in complex with the retinoid X receptor (RXR) plays a central role in white adipose tissue (WAT) differentiation and function, regulating the expression of key WAT proteins. In this report we show that poly(ADP-ribose) polymerase-2 (PARP-2), also known as an enzyme participating in the surveillance of the genome integrity, is a member of the PPARgamma/RXR transcription machinery. PARP-2(-/-) mice accumulate less WAT, characterized by smaller adipocytes. In the WAT of PARP-2(-/-) mice the expression of a number of PPARgamma target genes is reduced despite the fact that PPARgamma1 and -gamma2 are expressed at normal levels. Consistent with this, PARP-2(-/-) mouse embryonic fibroblasts fail to differentiate to adipocytes. In transient transfection assays, PARP-2 small interference RNA decreases basal activity and ligand-dependent activation of PPARgamma, whereas PARP-2 overexpression enhances the basal activity of PPARgamma, although it does not change the maximal ligand-dependent activation. In addition, we show a DNA-dependent interaction of PARP-2 and PPARgamma/RXR heterodimer by chromatin immunoprecipitation. In combination, our results suggest that PARP-2 is a novel cofactor of PPARgamma activity.


Subject(s)
Adipocytes/metabolism , Adipose Tissue/physiology , Gene Expression Regulation , PPAR gamma/metabolism , Poly(ADP-ribose) Polymerases/physiology , Retinoid X Receptors/metabolism , 3T3-L1 Cells , Adipose Tissue/metabolism , Animals , Cell Differentiation , Dimerization , Fibroblasts/metabolism , Heterozygote , Mice , Mice, Transgenic , Models, Biological
6.
BMC Mol Biol ; 8: 29, 2007 Apr 25.
Article in English | MEDLINE | ID: mdl-17459151

ABSTRACT

ATM and PARP-1 are two of the most important players in the cell's response to DNA damage. PARP-1 and ATM recognize and bound to both single and double strand DNA breaks in response to different triggers. Here we report that ATM and PARP-1 form a molecular complex in vivo in undamaged cells and this association increases after gamma-irradiation. ATM is also modified by PARP-1 during DNA damage. We have also evaluated the impact of PARP-1 absence or inhibition on ATM-kinase activity and have found that while PARP-1 deficient cells display a defective ATM-kinase activity and reduced gamma-H2AX foci formation in response to gamma-irradiation, PARP inhibition on itself is able to activate ATM-kinase. PARP inhibition induced gamma H2AX foci accumulation, in an ATM-dependent manner. Inhibition of PARP also induces DNA double strand breaks which were dependent on the presence of ATM. As consequence ATM deficient cells display an increased sensitivity to PARP inhibition. In summary our results show that while PARP-1 is needed in the response of ATM to gamma irradiation, the inhibition of PARP induces DNA double strand breaks (which are resolved in and ATM-dependent pathway) and activates ATM kinase.


Subject(s)
Cell Cycle Proteins/metabolism , DNA Damage , DNA-Binding Proteins/metabolism , Poly(ADP-ribose) Polymerase Inhibitors , Poly(ADP-ribose) Polymerases/metabolism , Protein Serine-Threonine Kinases/metabolism , Tumor Suppressor Proteins/metabolism , Adenosine Diphosphate/metabolism , Animals , Ataxia Telangiectasia Mutated Proteins , Cell Cycle Proteins/genetics , Cell Line , DNA-Binding Proteins/genetics , Humans , Mice , Mice, Knockout , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/deficiency , Poly(ADP-ribose) Polymerases/genetics , Protein Binding , Protein Serine-Threonine Kinases/genetics , Tumor Suppressor Proteins/genetics
7.
EMBO J ; 25(18): 4350-60, 2006 Sep 20.
Article in English | MEDLINE | ID: mdl-16946705

ABSTRACT

Poly-(ADP-ribose) polymerase-2 (PARP-2) belongs to a large family of enzymes that synthesize and transfer ADP-ribose polymers to acceptor proteins, modifying their functional properties. PARP-2-deficient (Parp-2-/-) cells, similar to Parp-1-/- cells, are sensitive to both ionizing radiation and alkylating agents. Here we show that inactivation of mouse Parp-2, but not Parp-1, produced a two-fold reduction in CD4+CD8+ double-positive (DP) thymocytes associated with decreased DP cell survival. Microarray analyses revealed increased expression of the proapoptotic Bcl-2 family member Noxa in Parp-2-/- DP thymocytes compared to littermate controls. In addition, DP thymocytes from Parp-2-/- have a reduced expression of T-cell receptor (TCR)alpha and a skewed repertoire of TCRalpha toward the 5' Jalpha segments. Our results show that in the absence of PARP-2, the survival of DP thymocytes undergoing TCRalpha recombination is compromised despite normal amounts of Bcl-xL. These data suggest a novel role for PARP-2 as an important mediator of T-cell survival during thymopoiesis by preventing the activation of DNA damage-dependent apoptotic response during the multiple rounds of TCRalpha rearrangements preceding a positively selected TCR.


Subject(s)
CD4-Positive T-Lymphocytes/cytology , CD4-Positive T-Lymphocytes/enzymology , CD8-Positive T-Lymphocytes/cytology , CD8-Positive T-Lymphocytes/enzymology , Poly(ADP-ribose) Polymerases/deficiency , Animals , Apoptosis , CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Cell Proliferation , Cell Survival , DNA Damage , Gene Expression Profiling , Gene Rearrangement, T-Lymphocyte , Genes, p53 , Lymphopoiesis/physiology , Mice , Mice, Inbred C57BL , Mice, Knockout , Oligonucleotide Array Sequence Analysis , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/genetics , Poly(ADP-ribose) Polymerases/metabolism , Proto-Oncogene Proteins c-bcl-2/genetics , Signal Transduction
8.
Proc Natl Acad Sci U S A ; 103(40): 14854-9, 2006 Oct 03.
Article in English | MEDLINE | ID: mdl-17001008

ABSTRACT

Besides the established central role of poly(ADP-ribose) polymerase-1 (Parp-1) and Parp-2 in the maintenance of genomic integrity, accumulating evidence indicates that poly(ADP-ribosyl)ation may modulate epigenetic modifications under physiological conditions. Here, we provide in vivo evidence for the pleiotropic involvement of Parp-2 in both meiotic and postmeiotic processes. We show that Parp-2-deficient mice exhibit severely impaired spermatogenesis, with a defect in prophase of meiosis I characterized by massive apoptosis at pachytene and metaphase I stages. Although Parp-2(-/-) spermatocytes exhibit normal telomere dynamics and normal chromosome synapsis, they display defective meiotic sex chromosome inactivation associated with derailed regulation of histone acetylation and methylation and up-regulated X- and Y-linked gene expression. Furthermore, a drastically reduced number of crossover-associated Mlh1 foci are associated with chromosome missegregation at metaphase I. Moreover, Parp-2(-/-) spermatids are severely compromised in differentiation and exhibit a marked delay in nuclear elongation. Altogether, our findings indicate that, in addition to its well known role in DNA repair, Parp-2 exerts essential functions during meiosis I and haploid gamete differentiation.


Subject(s)
Meiosis/physiology , Poly(ADP-ribose) Polymerases/metabolism , Spermatogenesis/physiology , Animals , Apoptosis , Chromosome Segregation/genetics , Chromosomes, Mammalian/genetics , Infertility, Male , Male , Metaphase/physiology , Mice , Poly(ADP-ribose) Polymerases/deficiency , Sex Chromosomes/genetics , Spermatocytes/cytology , Telomere/metabolism , Testis/cytology
9.
Nat Rev Mol Cell Biol ; 7(7): 517-28, 2006 Jul.
Article in English | MEDLINE | ID: mdl-16829982

ABSTRACT

The addition to proteins of the negatively charged polymer of ADP-ribose (PAR), which is synthesized by PAR polymerases (PARPs) from NAD(+), is a unique post-translational modification. It regulates not only cell survival and cell-death programmes, but also an increasing number of other biological functions with which novel members of the PARP family have been associated. These functions include transcriptional regulation, telomere cohesion and mitotic spindle formation during cell division, intracellular trafficking and energy metabolism.


Subject(s)
Poly Adenosine Diphosphate Ribose/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Protein Isoforms/metabolism , Animals , Cell Death/physiology , Cell Division/physiology , DNA Damage , DNA Repair , Diphtheria Toxin/chemistry , Humans , Inflammation/metabolism , Models, Molecular , Multigene Family , NAD/biosynthesis , Poly Adenosine Diphosphate Ribose/chemistry , Poly Adenosine Diphosphate Ribose/genetics , Poly(ADP-ribose) Polymerases/chemistry , Poly(ADP-ribose) Polymerases/genetics , Protein Conformation , Protein Isoforms/chemistry , Protein Isoforms/genetics
10.
Methods Enzymol ; 409: 493-510, 2006.
Article in English | MEDLINE | ID: mdl-16793420

ABSTRACT

Changes in chromatin structure emanating from DNA breaks are among the most initiating events in the damage response of the cell. In higher eukaryotes, poly(ADP-ribose) polymerase-1 (PARP-1) translates the occurrence of DNA breaks detected by its zinc-finger domain into a signal, poly ADP-ribose, synthesized and amplified by its DNA-damage dependent catalytic domain. This epigenetic mark on chromatin, induced by DNA discontinuities, is now considered as a part of a survival program aimed at protecting primarily chromatin integrity and stability. In this chapter we describe some of our methods for determining in vivo and in vitro PARP-1 activation in response to DNA strand breaks. Poly(ADP-ribosyl)ation is a posttranslational modification of nuclear proteins induced by DNA strand-breaks that contributes to the survival of injured proliferating cells (D'Amours et al., 1999). Poly(ADP-ribose) polymerases (PARPs) now constitute a large family of 18 proteins, encoded by different genes and displaying a conserved catalytic domain in which PARP-1 (113 kDa), the founding member, and PARP-2 (62 kDa) are so far the sole enzymes whose catalytic activity is immediately stimulated by DNA strand-breaks (Ame et al., 2004). PARP-1 fulfils several key functions in repairing an interruption of the sugar phosphate backbone. It efficiently detects the presence of a break by its N-terminal zinc-finger domain; the occurrence of a break is immediately translated into a posttranslational modification of histones H1 and H2B leading to chromatin structure relaxation and therefore to increased DNA accessibility. As an amplified DNA damage signal, auto-poly(ADP-ribosyl)ation of PARP-1 triggers the recruitment of XRCC1, which coordinates and stimulates the repair process, to the DNA damage sites in less than 15 s in living cells (Okano et al., 2003). Although dispensable in a test tube DNA repair experiment, in vivo these three properties positively influence the overall kinetics of a DNA damage-detection/signaling pathway leading rapidly to the resolution of DNA breaks. Accordingly, poly ADP-ribose (PAR) synthesis and the accompanying NAD consumption are now considered as bona fide marks of DNA interruptions in the genome. In this chapter we describe several methods for determining PARP activation in response to the occurrence of DNA breaks in vitro and in vivo.


Subject(s)
DNA Damage , DNA Repair , Poly(ADP-ribose) Polymerases/metabolism , Animals , Base Sequence , Cell Line , Chromatography, Affinity , DNA Primers , Enzyme Activation , Humans , Mice , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/isolation & purification , Spodoptera
11.
Cell Cycle ; 5(8): 873-7, 2006 Apr.
Article in English | MEDLINE | ID: mdl-16628003

ABSTRACT

Cell survival after genotoxic stress is determined by a counterbalance of pro- and anti-death factors. Sirtuins (SIRTs) are deacetylases that promote cell survival whereas poly(ADP-ribose) polymerases (PARPs) can act both as survival and death inducing factor and the two protein families are strictly dependent on NAD(+) for their activities. Here we report that SIRT1 modulates PARP-1 activity upon DNA damage. Activation of SIRT1 by resveratrol leads to reduced PARP-1 activity and there is a drastic increase in PAR synthesis in sirt1-null cells. The unbalanced regulation of PARP-1 in the absence of SIRT1 results in AIF (apoptosis inducing factor)-mediated cell death. Our findings establish a functional link between the two NAD+-dependent enzyme systems and provide a physiological interpretation for the mechanism of death in cells lacking SIRT1.


Subject(s)
Apoptosis Inducing Factor/physiology , DNA Damage , Gene Expression Regulation , Poly(ADP-ribose) Polymerases/physiology , Sirtuins/physiology , Animals , Cell Death , Cell Line , Enzyme Inhibitors/pharmacology , Humans , Mice , Models, Biological , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/metabolism , Resveratrol , Sirtuin 1 , Stilbenes/pharmacology
12.
EMBO J ; 25(6): 1305-14, 2006 Mar 22.
Article in English | MEDLINE | ID: mdl-16498404

ABSTRACT

Parp-1 and Parp-2 are activated by DNA breaks and have been implicated in the repair of DNA single-strand breaks (SSB). Their involvement in double-strand break (DSB) repair mediated by homologous recombination (HR) or nonhomologous end joining (NHEJ) remains unclear. We addressed this question using chicken DT40 cells, which have the advantage of carrying only a PARP-1 gene but not a PARP-2 gene. We found that PARP-1(-/-) DT40 mutants show reduced levels of HR and are sensitive to various DSB-inducing genotoxic agents. Surprisingly, this phenotype was strictly dependent on the presence of Ku, a DSB-binding factor that mediates NHEJ. PARP-1/KU70 double mutants were proficient in the execution of HR and displayed elevated resistance to DSB-inducing drugs. Moreover, we found deletion of Ligase IV, another NHEJ gene, suppressed the camptothecin of PARP-1(-/-) cells. Our results suggest a new critical function for Parp in minimizing the suppressive effects of Ku and the NHEJ pathway on HR.


Subject(s)
Antigens, Nuclear/pharmacology , B-Lymphocytes/drug effects , DNA Ligases/deficiency , DNA-Binding Proteins/pharmacology , Poly(ADP-ribose) Polymerases/physiology , Recombination, Genetic , Animals , B-Lymphocytes/metabolism , Camptothecin/pharmacology , Cell Line , Chickens , DNA/chemistry , DNA/genetics , DNA/metabolism , DNA Damage/drug effects , DNA Ligase ATP , Homozygote , Ku Autoantigen , Mutation , Phenotype , Transfection
13.
Nucleic Acids Res ; 34(1): 32-41, 2006.
Article in English | MEDLINE | ID: mdl-16397295

ABSTRACT

The two BRCT domains (BRCT1 and BRCT2) of XRCC1 mediate a network of protein-protein interactions with several key factors of the DNA single-strand breaks (SSBs) and base damage repair pathways. BRCT1 is required for the immediate poly(ADP-ribose)-dependent recruitment of XRCC1 to DNA breaks and is essential for survival after DNA damage. To better understand the biological role of XRCC1 in the processing of DNA ends, a search for the BRCT1 domain-associated proteins was performed by mass spectrometry of GST-BRCT1 pulled-down proteins from HeLa cell extracts. Here, we report that the double-strand break (DSB) repair heterotrimeric complex DNA-PK interacts with the BRCT1 domain of XRCC1 and phosphorylates this domain at serine 371 after ionizing irradiation. This caused XRCC1 dimer dissociation. The XRCC1 R399Q variant allele did not affect this phosphorylation. We also show that XRCC1 strongly stimulates the phosphorylation of p53-Ser15 by DNA-PK. The pseudo phosphorylated S371D mutant was a much weaker stimulator of DNA-PK activity whereas the non-phosphorylable mutant S371L endowed with a DNA-PK stimulating capacity failed to fully rescue the DSB repair defect of XRCC1-deficient EM9 rodent cells. The functional association between XRCC1 and DNA-PK in response to IR provides the first evidence for their involvement in a common DSB repair pathway.


Subject(s)
DNA Damage , DNA Repair , DNA-Activated Protein Kinase/metabolism , DNA-Binding Proteins/metabolism , Animals , Binding Sites , Cricetinae , DNA-Binding Proteins/chemistry , Dimerization , HeLa Cells , Humans , Mass Spectrometry , Phosphorylation , Protein Structure, Tertiary , Radiation, Ionizing , Serine/metabolism , X-ray Repair Cross Complementing Protein 1
14.
Biochemistry ; 44(44): 14670-81, 2005 Nov 08.
Article in English | MEDLINE | ID: mdl-16262266

ABSTRACT

In response to DNA strand breaks in the genome of higher eukaryotes, poly(ADP-ribose)polymerase 1 (PARP-1) catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins including PARP-1 itself. This post-translational modification affecting proteins involved in chromatin architecture and in DNA repair plays a critical role in cell survival as well as in caspase-independent cell death. Although PARP-1 has been best-studied for its role in genome stability, several recent reports have demonstrated its role in the regulation of transcription. In this study, fluorescence spectroscopy and biochemical techniques are used to investigate the association of the amino-terminal DNA-binding domain of human PARP-1 (hPARP-1 DBD) with various DNA substrates, characterized by different DNA ends and sequence features (5'- or 3'-recessed end, double strands, telomeric repeats, and the palindromic sequence of a Not I restriction site). The correlation between the binding mode of hPARP-1 DBD to the DNA oligoduplexes and the enzymatic activation of hPARP-1 is analyzed. We show that hPARP-1 DBD binds a 5'-recessed DNA end cooperatively with a stoichiometry of two proteins per DNA molecule. In contrast, a 1:1 stoichiometry is found in the presence of a 3'-recessed end and double-strand DNA. A palindromic structure like the Not I restriction site is shown to induce protein dimerization and high enzymatic activation, suggesting that it can represent a recognition element for hPARP-1 in undamaged cells. Protein dimerization is found to be a requisite for high enzymatic activity. Taken together, our data allow further characterization of the features of hPARP-1 recognition in damaged cells and bring additional evidence that hPARP-1 may also play a role in undamaged cells.


Subject(s)
DNA/metabolism , Poly(ADP-ribose) Polymerases/chemistry , Poly(ADP-ribose) Polymerases/metabolism , Protein Conformation , Base Sequence , DNA/chemistry , Deoxyribonuclease I/metabolism , Dimerization , Enzyme Activation , Humans , Molecular Sequence Data , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/genetics , Sequence Alignment , Zinc Fingers
15.
Proc Natl Acad Sci U S A ; 102(40): 14244-8, 2005 Oct 04.
Article in English | MEDLINE | ID: mdl-16179389

ABSTRACT

The cell cycle-regulated Aurora-B kinase is a chromosomal passenger protein that is implicated in fundamental mitotic events, including chromosome alignment and segregation and spindle checkpoint function. Aurora-B phosphorylates serine 10 of histone H3, a function that has been associated with mitotic chromatin condensation. We find that activation of poly(ADP-ribose) polymerase (PARP) 1 by DNA damage results in a rapid block of H3 phosphorylation. PARP-1 is a NAD(+)-dependent enzyme that plays a multifunctional role in DNA damage detection and repair and maintenance of genomic stability. Here, we show that Aurora-B physically and specifically associates with the BRCT (BRCA-1 C-terminal) domain of PARP-1. Aurora-B becomes highly poly(ADP-ribosyl)ated in response to DNA damage, a modification that leads to a striking inhibition of its kinase activity. The highly similar Aurora-A kinase is not regulated by PARP-1. We propose that the specific inhibition of Aurora-B kinase activity by PARP-1 contributes to the physiological response to DNA damage.


Subject(s)
DNA Damage , Poly Adenosine Diphosphate Ribose/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Protein Serine-Threonine Kinases/metabolism , Proteins/metabolism , Animals , Aurora Kinase A , Aurora Kinase B , Aurora Kinases , Blotting, Western , COS Cells , Chlorocebus aethiops , Histones/metabolism , Immunoprecipitation , Mice , NIH 3T3 Cells , Phosphorylation , Poly (ADP-Ribose) Polymerase-1
16.
Mol Cell ; 18(1): 83-96, 2005 Apr 01.
Article in English | MEDLINE | ID: mdl-15808511

ABSTRACT

We show that PARP-1 is indispensable to retinoic acid receptor (RAR)-mediated transcription from the RARbeta2 promoter in a highly purified, reconstituted transcription system and that RA-inducible expression of all RARbeta isoforms is abrogated in PARP-1(-/-) cells in vivo. Importantly, PARP-1 activity was independent of its catalytic domain. PARP-1 directly interacts with RAR and Mediator. Chromatin immunoprecipitation experiments confirmed the presence of PARP-1 and Mediator on RAR-responsive promoters in vivo. Importantly, Mediator was inactive (Cdk8+) under basal conditions but was activated (Cdk8-) upon induction. However, in PARP-1(-/-) cells, Mediator was retained in its inactive state (Cdk8+) upon induction consistent with the absence of gene expression. PARP-1 became dispensable for ligand-dependent transcription in a chromatin reconstituted transcription assay when Mediator was devoid of the Cdk8 module (CRSP). PARP-1 appears to function as a specificity factor regulating the RA-induced switch of Mediator from the inactive (Cdk8+) to the active (Cdk8-) state in RAR-dependent transcription.


Subject(s)
Poly(ADP-ribose) Polymerases/metabolism , Receptors, Retinoic Acid/metabolism , Signal Transduction/physiology , Animals , Cell Line , Cell Nucleus/genetics , Cell Nucleus/physiology , Dimerization , Gene Deletion , HeLa Cells , Humans , Poly(ADP-ribose) Polymerases/genetics , Receptors, Retinoic Acid/genetics , Recombinant Proteins/metabolism , Reverse Transcriptase Polymerase Chain Reaction , Transcription, Genetic/genetics , Transfection
17.
J Cell Biochem ; 94(6): 1163-74, 2005 Apr 15.
Article in English | MEDLINE | ID: mdl-15696577

ABSTRACT

Poly(ADP-ribose) polymerase-1 (PARP-1) plays a critical role in endothelial cell dysfunction associated with various pathophysiological conditions. To elucidate PARP-1 pathways involved in endothelial cell dysfunction, it is essential to establish "in vitro" experimental models using isolated endothelial cells. So far, two approaches have been used: primary endothelial cells from PARP-1-/- mice which have a limited life-span, being a major handicap if large quantities of cells are required; and pharmacological inhibition of PARP in PARP-1+/+ endothelial cell lines, which is not specific for PARP-1 and would have biological effects different that genetic inhibition. To overcome these limitations, we have established an immortalized PARP-1-/- endothelial cell line (HYKO6) by transfection of primary cells with a plasmid containing the SV40 genome and selected on the basis of morphological and phenotypical features. The HYKO6 cell line exhibited endothelial characteristics, such as constitutive expression of CD105, CD31, ICAM-2, VCAM-1, and von Willebrand factor and formation of capillary-like structures (CLS) on Matrigel surface. However, expression of ICAM-1 antigen is lost in the HYKO6 cells. After TNF-alpha treatment, HYKO6 cells exhibited increased expression of E-selectin and VCAM-1. Likewise, NF-kappaB-dependent transcriptional activation was increased in the HYKO6 cell line in response to TNF-alpha at a level similar to that found for primary PARP-1-/- cells. This cell line should provide, for the first time, a valuable tool to study PARP-1 pathways in endothelial cell dysfunction.


Subject(s)
Endothelium, Vascular/cytology , Poly(ADP-ribose) Polymerases/physiology , Animals , Base Sequence , Cell Line, Transformed , DNA Primers , Endothelium, Vascular/enzymology , Mice , Myocardium/cytology , Myocardium/enzymology , Reverse Transcriptase Polymerase Chain Reaction , Tumor Necrosis Factor-alpha/metabolism
18.
Biochem J ; 386(Pt 1): 119-25, 2005 Feb 15.
Article in English | MEDLINE | ID: mdl-15456408

ABSTRACT

p53 deficiency confers resistance to doxo (doxorubicin), a clinically active and widely used antitumour anthracycline antibiotic. The purpose of the present study was to investigate the reversal mechanism of doxo resistance by the potent PARP [poly(ADP-ribose) polymerase] inhibitor ANI (4-amino-1,8-naphthalimide) in the p53-deficient breast cancer cell lines EVSA-T and MDA-MB-231. The effects of ANI, in comparison with doxo alone, on doxo-induced apoptosis, were investigated in matched pairs of EVSA-T or MDA-MB-231 with or without ANI co-treatment. Doxo elicited PARP activation as determined by Western blotting and immunofluorescence of poly(ADP-ribose), and ANI enhanced the cytotoxic activity of doxo 2.3 times and in a caspase-dependent manner. The long-term cytotoxic effect was studied by a colony-forming assay. Using this assay, ANI also significantly potentiates the long-term cytotoxic effect with respect to treatment with doxo alone. Decrease in mitochondrial potential together with an increase in cytochrome c release, association of Bax with the mitochondria and caspase 3 activation were also observed in the presence of ANI. Therefore PARP inhibition may represent a novel way of selectively targeting p53-deficient breast cancer cells. The underlying mechanism is probably a potentiation of unrepaired DNA damage, shifting from DNA repair to apoptosis due to the effective inhibition of PARP activity.


Subject(s)
1-Naphthylamine/analogs & derivatives , 1-Naphthylamine/pharmacology , Apoptosis/drug effects , Breast Neoplasms/pathology , Doxorubicin/pharmacology , Drug Resistance, Neoplasm/drug effects , Neoplasm Proteins/antagonists & inhibitors , Poly(ADP-ribose) Polymerase Inhibitors , Quinolones/pharmacology , Tumor Suppressor Protein p53/deficiency , Breast Neoplasms/genetics , Caspase 3 , Caspases/metabolism , Drug Synergism , Female , Genes, p53 , Humans , Intracellular Membranes/drug effects , Membrane Potentials/drug effects , Mitochondria/drug effects , Naphthalimides , Neoplasm Proteins/metabolism , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/metabolism , Proto-Oncogene Proteins c-bcl-2/metabolism , Tumor Cells, Cultured/drug effects , Tumor Cells, Cultured/metabolism , Tumor Stem Cell Assay , bcl-2-Associated X Protein
19.
J Cell Sci ; 118(Pt 1): 211-22, 2005 Jan 01.
Article in English | MEDLINE | ID: mdl-15615785

ABSTRACT

The DNA damage-dependent poly(ADP-ribose) polymerases-1 and -2 (PARP-1 and PARP-2) are survival factors that share overlapping functions in the detection, signaling and repair of DNA strand breaks resulting from genotoxic lesions in mammalian cells. Here we show that PARP-1 and PARP-2 subnuclear distributions partially overlap, with both proteins accumulating within the nucleolus independently of each other. PARP-2 is enriched within the whole nucleolus and partially colocalizes with the nucleolar factor nucleophosmin/B23. We have identified a nuclear localization signal and a nucleolar localization signal within the N-terminal domain of PARP-2. PARP-2, like PARP-1, interacts with B23 through its N-terminal DNA binding domain. This association is constitutive and does not depend on either PARP activity or ribosomal transcription, but is prevented by mutation of the nucleolar localization signal of PARP-2. PARP-1 and PARP-2, together with B23, are delocalized from the nucleolus upon RNA polymerase I inhibition whereas the nucleolar accumulation of all three proteins is only moderately affected upon oxidative or alkylated DNA damage. Finally, we show that murine fibroblasts deficient in PARP-1 or PARP-2 are not affected in the transcription of ribosomal RNAs. Taken together, these results suggest that the biological role of PARP-1 and PARP-2 within the nucleolus relies on functional nucleolar transcription, without any obvious implication of either PARP on this major nucleolar process.


Subject(s)
Cell Nucleolus/metabolism , Fibroblasts/metabolism , Nuclear Proteins/metabolism , Poly(ADP-ribose) Polymerases/metabolism , Transcription, Genetic , Animals , Cells, Cultured , DNA Damage , Embryo, Mammalian , Mice , Nucleophosmin , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/chemistry , Protein Structure, Tertiary , RNA Polymerase I/antagonists & inhibitors
20.
J Cell Biol ; 167(4): 627-38, 2004 Nov 22.
Article in English | MEDLINE | ID: mdl-15545322

ABSTRACT

The DNA repair proteins poly(ADP-ribose) polymerase-1 (PARP-1), Ku86, and catalytic subunit of DNA-PK (DNA-PKcs) have been involved in telomere metabolism. To genetically dissect the impact of these activities on telomere function, as well as organismal cancer and aging, we have generated mice doubly deficient for both telomerase and any of the mentioned DNA repair proteins, PARP-1, Ku86, or DNA-PKcs. First, we show that abrogation of PARP-1 in the absence of telomerase does not affect the rate of telomere shortening, telomere capping, or organismal viability compared with single telomerase-deficient controls. Thus, PARP-1 does not have a major role in telomere metabolism, not even in the context of telomerase deficiency. In contrast, mice doubly deficient for telomerase and either Ku86 or DNA-PKcs manifest accelerated loss of organismal viability compared with single telomerase-deficient mice. Interestingly, this loss of organismal viability correlates with proliferative defects and age-related pathologies, but not with increased incidence of cancer. These results support the notion that absence of telomerase and short telomeres in combination with DNA repair deficiencies accelerate the aging process without impacting on tumorigenesis.


Subject(s)
Aging, Premature/genetics , Antigens, Nuclear/genetics , Cell Transformation, Neoplastic/genetics , DNA Repair/genetics , DNA-Binding Proteins/genetics , Poly(ADP-ribose) Polymerases/genetics , Protein Serine-Threonine Kinases/genetics , Telomerase/physiology , Aging, Premature/metabolism , Aging, Premature/pathology , Animals , Cell Division/genetics , Cell Transformation, Neoplastic/metabolism , Chromosomal Instability/genetics , DNA-Activated Protein Kinase , DNA-Binding Proteins/deficiency , Female , Ku Autoantigen , Longevity/genetics , Male , Mice , Mice, Knockout , Neoplasms/genetics , Neoplasms/metabolism , Poly (ADP-Ribose) Polymerase-1 , Poly(ADP-ribose) Polymerases/deficiency , Protein Serine-Threonine Kinases/deficiency , Telomerase/deficiency , Telomerase/genetics , Telomere/genetics
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