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1.
PLoS One ; 13(8): e0201793, 2018.
Article in English | MEDLINE | ID: mdl-30071092

ABSTRACT

Monoclonal gammopathy of undetermined significance (MGUS) is a plasma cell dyscrasia that can progress to malignant multiple myeloma (MM). Specific molecular biomarkers to classify the MGUS status and discriminate the initial asymptomatic phase of MM have not been identified. We examined the serum peptidome profile of MGUS patients and healthy volunteers using MALDI-TOF mass spectrometry and developed a predictive model for classifying serum samples. The predictive model was built using a support vector machine (SVM) supervised learning method tuned by applying a 20-fold cross-validation scheme. Predicting class labels in a blinded test set containing randomly selected MGUS and healthy control serum samples validated the model. The generalization performance of the predictive model was evaluated by a double cross-validation method that showed 88% average model accuracy, 89% average sensitivity and 86% average specificity. Our model, which classifies unknown serum samples as belonging to either MGUS patients or healthy individuals, can be applied to clinical diagnosis.


Subject(s)
Hematologic Tests/methods , Monoclonal Gammopathy of Undetermined Significance/blood , Proteome , Serum/metabolism , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Adult , Aged , Aged, 80 and over , Biomarkers/blood , Female , Humans , Male , Middle Aged , Quality Control , Sensitivity and Specificity , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/methods , Support Vector Machine , Young Adult
2.
PLoS One ; 10(9): e0135199, 2015.
Article in English | MEDLINE | ID: mdl-26353114

ABSTRACT

BACKGROUND: The electronic nose (e-nose) detects volatile organic compounds (VOCs) in exhaled air. We hypothesized that the exhaled VOCs print is different in stable vs. exacerbated patients with chronic obstructive pulmonary disease (COPD), particularly if the latter is associated with airway bacterial infection, and that the e-nose can distinguish them. METHODS: Smell-prints of the bacteria most commonly involved in exacerbations of COPD (ECOPD) were identified in vitro. Subsequently, we tested our hypothesis in 93 patients with ECOPD, 19 of them with pneumonia, 50 with stable COPD and 30 healthy controls in a cross-sectional case-controlled study. Secondly, ECOPD patients were re-studied after 2 months if clinically stable. Exhaled air was collected within a Tedlar bag and processed by a Cynarose 320 e-nose. Breath-prints were analyzed by Linear Discriminant Analysis (LDA) with "One Out" technique and Sensor logic Relations (SLR). Sputum samples were collected for culture. RESULTS: ECOPD with evidence of infection were significantly distinguishable from non-infected ECOPD (p = 0.018), with better accuracy when ECOPD was associated to pneumonia. The same patients with ECOPD were significantly distinguishable from stable COPD during follow-up (p = 0.018), unless the patient was colonized. Additionally, breath-prints from COPD patients were significantly distinguished from healthy controls. Various bacteria species were identified in culture but the e-nose was unable to identify accurately the bacteria smell-print in infected patients. CONCLUSION: E-nose can identify ECOPD, especially if associated with airway bacterial infection or pneumonia.


Subject(s)
Bacteria/isolation & purification , Bacterial Infections/complications , Bacterial Infections/diagnosis , Electronic Nose , Pulmonary Disease, Chronic Obstructive/complications , Volatile Organic Compounds/analysis , Aged , Bacteria/chemistry , Bacterial Infections/microbiology , Breath Tests/instrumentation , Case-Control Studies , Cross-Sectional Studies , Equipment Design , Exhalation , Female , Humans , Lung/microbiology , Male , Middle Aged , Pneumonia/complications , Pneumonia/diagnosis , Pneumonia/microbiology
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