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1.
Org Biomol Chem ; 14(14): 3506-9, 2016 Apr 14.
Article in English | MEDLINE | ID: mdl-26991839

ABSTRACT

The interactions between chondroitin sulfate (CS) and a wide number of proteins modulate important biological processes. Here, the binding properties to midkine and pleiotrophin of sulfated, fully protected intermediates, typically obtained in the chemical synthesis of CS oligosaccharides, were tested for the first time. Using a fluorescence polarization competition experiment, we discovered that these synthetic precursors strongly bound these two closely related cytokines involved in cancer and inflammation. The relative binding affinities of these intermediates were significantly higher than those displayed by the corresponding fully deprotected oligosaccharides, indicating that the presence of hydrophobic protecting groups strongly enhanced the binding of CS-like derivatives to midkine. These compounds offer novel opportunities for the development of potent inhibitors/activators of CS-protein interactions with potential therapeutic applications.


Subject(s)
Chondroitin Sulfates/metabolism , Cytokines/metabolism , Binding Sites , Fluorescence Polarization , Hydrophobic and Hydrophilic Interactions , Midkine
2.
Biochemistry ; 50(13): 2650-9, 2011 Apr 05.
Article in English | MEDLINE | ID: mdl-21370880

ABSTRACT

Annexin A1 is a multifunctional, calcium-dependent phospholipid binding protein involved in a host of processes including inflammation, regulation of neuroendocrine signaling, apoptosis, and membrane trafficking. Binding of annexin A1 to glycans has been implicated in cell attachment and modulation of annexin A1 function. A detailed characterization of the glycan binding preferences of annexin A1 using carbohydrate microarrays and surface plasmon resonance served as a starting point to understand the role of glycan binding in annexin A1 function. Glycan array analysis identified annexin A1 binding to a series of sulfated oligosaccharides and revealed for the first time that annexin A1 binds to sulfated non-glycosaminoglycan carbohydrates. Using heparin/heparan sulfate microarrays, highly sulfated heparan sulfate/heparin were identified as preferred ligands of annexin A1. Binding of annexin A1 to heparin/heparan sulfate is calcium- but not magnesium-dependent. An in-depth structure-activity relationship of annexin A1-heparan sulfate interactions was established using chemically defined sugars. For the first time, a calcium-dependent heparin binding protein was characterized with such an approach. N-Sulfation and 2-O-sulfation were identified as particularly important for binding.


Subject(s)
Annexin A1/metabolism , Heparin/metabolism , Heparitin Sulfate/metabolism , Polysaccharides/metabolism , Animals , Annexin A1/genetics , Calcium/metabolism , Glycosaminoglycans/chemistry , Glycosaminoglycans/metabolism , Heparin/chemistry , Heparitin Sulfate/chemistry , Kinetics , Ligands , Mice , Microarray Analysis/methods , Osmolar Concentration , Recombinant Proteins/metabolism , Structure-Activity Relationship , Surface Plasmon Resonance
3.
J Phys Chem A ; 112(5): 904-14, 2008 Feb 07.
Article in English | MEDLINE | ID: mdl-18193844

ABSTRACT

For a molecule which contains an intramolecular hydrogen bond (IMHB) in its chemical structure to undergo an excited singlet intramolecular proton transfer (ESIPT) process, on photoexcitation, there must occur a simultaneous increase, in a substantial manner, in the acidity of the proton donor and the basicity of the proton acceptor forming the IMHB [J. Am. Chem. Soc. 2001, 123, 11940]. For the reason that those changes occur on photoexcitation of the 2-hydroxyacetophenone but not for 1-hydroxy-acetonaphthone, one draws the conclusion that, while ESIPT is operative in the 1(pi,pi*)(1) electronic state of the monocyclic compound 2-hydroxyacetophenone, it is not operative in its bicyclic homolog 1-hydroxy-2-acetonaphthone. We have shown the photophysics of 1-hydroxy-2-acetonaphthone in its first excited electronic state to be governed by two stable, easily reconverted enol structures, the presence of which causes the peaks in the free-jet fluorescence excitation spectrum for the compound to split into two of similar strength. In this paper, we rationalize photophysical evidence for 1-hydroxy-2-acetonaphthone obtained by femtosecond spectroscopy over the past 13 years in the light of existing photophysical patterns based on steady-state spectra for the compound [J. Am. Chem. Soc. 1993, 115, 4321].

4.
J Chem Phys ; 124(3): 034306, 2006 Jan 21.
Article in English | MEDLINE | ID: mdl-16438582

ABSTRACT

The disparate photophysical behavior of trans-1,3,5-hexatriene (nonfluorescent) and trans-1,3,5,7-octatetraene (with two fluorescence emissions) in the gas phase is explained in terms of the tendency of their 1B(u) excited states to rotate about their terminal carbon-carbon single bonds in order to adopt a quasiplanar molecular form of lower energy than the 1B(u) state in the parent all-trans structure. The origin of their disparate photophysical behavior is that such a transformation is subject to a small energy barrier in octatetraene; the barrier produces two minima (two fluorescence emissions) in the corresponding potential-energy curve. Instead of an energy barrier, hexatriene gives a 1,3-diene species which falls to the ground state so rapidly that no emission is produced.

5.
J Chem Phys ; 122(24): 244320, 2005 Jun 22.
Article in English | MEDLINE | ID: mdl-16035770

ABSTRACT

The molecular structure and properties of 7-azaindole in its first four singlet states were studied with a view to improving current understanding of the photophysical behavior of its C(2h) dimer. This dimer, which exhibits a double proton transfer via its two hydrogen bonds upon electronic excitation, has for 35 years been used as a model for the photophysical behavior of DNA base pairs. Electronic excitation of 7-azaindole simultaneously increases its acidity and basicity; these changes facilitate a concerted mechanism for the double proton transfer in the dimer. In this work, we found the acidity and basicity changes to occur only in its first pi,pi(*) excited singlet state.

6.
J Chem Phys ; 123(11): 114302, 2005 Sep 15.
Article in English | MEDLINE | ID: mdl-16392554

ABSTRACT

The potential-energy surfaces for the proton transfer in the doubly hydrogen-bonded dimer of 7-azaindole in its lowest excited electronic states were examined. The dimer with C2h symmetry in its lowest excited electronic states, 2Ag and 1Bu, undergoes concerted double-proton transfer via transition states of the same symmetry placed at energies 4.55 and 4.70 kcal/mol higher, respectively. This suggests that the activation barriers for the double-proton transfer, if any, are lower than 1 kcal/mol. Emission from the dimers resulting from the double-proton transfer involves a Stokes shift of 5605 cm(-1), as theoretically estimated from the 0-0 components of the absortion and emission transitions of the dimer. Surprisingly, however, the calculations suggest that the green emission cannot arise from the 2Ag state generated by a double-proton transfer, because this structure possesses an imaginary frequency. In the 7-azaindole dimer of Cs symmetry, the first excited electronic state, a', lies 4.9 kcal/mol below 1Bu. This excited state a' can be the starting point for single-proton transfers giving a zwitterionic form that can dissociate into the protonated and deprotonated forms of 7-azaindole, the former being electronically excited. This situation of lower symmetry is consistent with the mutational scheme proposed by Goodman [Nature (London) 378, 237 (1995)].

7.
J Chem Phys ; 120(4): 1864-72, 2004 Jan 22.
Article in English | MEDLINE | ID: mdl-15268319

ABSTRACT

Reported experimental evidence of the relative position of the first two excited electronic states in linear polyenes was carefully examined and compared with that derived from time dependent density functional theory (TDDFT) theoretical calculations performed at the B3LYP level on optimized geometries. The energy values for the first two triplet states 3Bu and 3Ag, obtained from TDDFT calculations, were found to be highly strongly correlated with the experimental values. Also, the theoretical calculations for the electronic transition 1 1Ag --> 1 1Bu were also extremely well correlated with their experimental counterparts; even more important, the three reported experimental data for 1 1Ag --> 2 1Ag transitions in these systems conformed to the correlation for the TDDFT 1 1Ag --> 1 1Bu transition. The first excited electronic state in the linear polyenes studied (from ethene to the compound consisting of 40 ethene units, P40) was found to be 1Bu. The energy gap between the excited states 2 1Ag and 1 1Bu decreased with increasing length of the polyene chain, but not to the extent required to cause inversion, at least up to P40. In the all-trans linear polyenes studied, the widely analyzed energy gap from the ground electronic state to the first excited singlet state for infinitely long chains may be meaningless as, even in P40, it is uncertain whether the ground electronic state continues to be a singlet.

8.
Proc Natl Acad Sci U S A ; 101(2): 419-22, 2004 Jan 13.
Article in English | MEDLINE | ID: mdl-14701906

ABSTRACT

A theoretical analysis of the double proton transfer (PT) in a hydrogen-bonded N-heterocyclic base pair is presented. The calculated (time-dependent density functional theory) double PT barrier calculated for the concerted process of the 7-azaindole C(2h) dimer in the first excited singlet electronic state S(1) conforms well to the kinetic data and the photophysical evidence reported in this article. The calculated PT energy barrier of 4.8 kcal/mol height, and the corresponding zero point energy value, yield for the S(1) state an activation energy barrier of 0.3 kcal/mol. This finding implies that the double PT concerted process is almost barrierless, confirming previous experiments. Upon N-H deuteration of the 7-azaindole dimer, the theoretical excited-state activation energy for the double deuterium transfer is determined to be 1.4 kcal/mol, in agreement with experiment, which in low-temperature spectroscopy is shown to negate excited-state double-deuteron transfer.

9.
Proc Natl Acad Sci U S A ; 99(9): 5799-803, 2002 Apr 30.
Article in English | MEDLINE | ID: mdl-11983884

ABSTRACT

A mechanism is proposed for the formation in gas phase, during a short time, of the delicately symmetrical coplanar C(2h) classic 7-azaindole (7AI) doubly hydrogen-bonded dimer. Of the five card-pack or otherwise random geometry structures most likely to be formed in the supersonic jet expansion molecular beam, none would be an obvious precursor to the C(2h) dimer. One unstable dimer with dipole-dipole, van der Waals, and plane-to-plane hydrogen bonding is shown to be capable of unhinging about the hydrogen-bond pair as an axis, from 0 degrees to 90 degrees to 180 degrees, yielding a deep minimum for the C(2h) structure with its delicate geometry and symmetry. This relaxation mechanism is feasible in the 3-micros interval between the nozzle escape and the first laser pulse interception of the molecular beam. In the second part of the paper four published mechanisms are compared for concerted vs. two-step biprotonic phototransfer for the 7AI dimers. The dependence of the latter two models on H-atom instead of proton-transfer as an intermediate step negates the mechanism in a singlet (pi,pi*) electronic state by the valency repulsion, in the 3-electron orbital that would be generated. The concerted mechanism for biprotonic phototransfer is reaffirmed by the analysis of the quantum mechanical conditions set on the biprotonic transfer in the photo-excited molecular 7AI pair.


Subject(s)
Indoles/chemistry , Protons , Dimerization , Electrons , Hydrogen Bonding , Lasers , Models, Chemical
10.
Proc Natl Acad Sci U S A ; 99(9): 5793-8, 2002 Apr 30.
Article in English | MEDLINE | ID: mdl-11983883

ABSTRACT

Six stable dimer models for 7-azaindole (including the classic C(2h) doubly hydrogen-bonded, coplanar, centrosymmetric dimer) are considered to be observable in adiabatic nozzle jet molecular beams. They are analyzed by hybrid density functional theory (DFT), the MP2 ab initio method for the ground electronic state, and the single-excitation configuration interaction (CIS) (over frozen ground state optimized geometries obtained from DFT) excited state calculations, for global potential minima and proton-transfer potential energy curves. Three simultaneity principles are stated: (i) intermolecular coherent excitation molecular exciton simultaneity, (ii) intramolecular acid-base change simultaneity at the pyrrolo-N-H and aza-N proton-donor, proton-acceptor sites, and (iii) intermolecular simultaneity of catalytic proton-donor, proton-acceptor action. It is suggested that the formation of the classic C(2h) dimer of 7-azaindole, which is considered exclusively by previous researchers, can be formed from at least one of the several card-pack hydrogen-bonded dimers in a secondary slower step approaching a microsecond scale, instead of the picosecond events at the supersonic nozzle. It is proposed that the complexity of dimerization modes is the basis of the postexcitation, postionization diverse kinetic isotope results.


Subject(s)
Indoles/chemistry , Protons , Catalysis , Dimerization , Kinetics , Models, Chemical , Models, Molecular , Quantum Theory , Thermodynamics
11.
Chembiochem ; 2(9): 673-85, 2001 Sep 03.
Article in English | MEDLINE | ID: mdl-11828504

ABSTRACT

An effective strategy has been designed for the synthesis of oligosaccharides of different sizes structurally related to the regular region of heparin; this is illustrated by the preparation of hexasaccharide 1 and octasaccharide 2. This synthetic strategy provides the oligosaccharide sequence containing a D-glucosamine unit at the nonreducing end that is not available either by enzymatic or chemical degradation of heparin. It may permit, after slight modifications, the preparation of oligosaccharide fragments with different charge distribution as well. NMR spectroscopy and molecular dynamics simulations have shown that the overall structure of 1 in solution is a stable right-hand helix with four residues per turn. Hexasaccharide 1 and, most likely, octasaccharide 2 are, therefore, chemically well-defined structural models of naturally occurring heparin-like oligosaccharides for use in binding and biological activity studies. Both compounds 1 and 2 induce the mitogenic activity of acid fibroblast growth factor (FGF1), with the half-maximum activating concentration of 2 being equivalent to that of heparin. Sedimentation equilibrium analysis with compound 2 suggests that heparin-induced FGF1 dimerization is not an absolute requirement for biological activity.


Subject(s)
Anticoagulants/pharmacology , Fibroblast Growth Factors/metabolism , Heparin/pharmacology , Oligosaccharides/pharmacology , Anticoagulants/chemical synthesis , Anticoagulants/chemistry , Biotransformation/drug effects , Carbohydrate Sequence , Heparin/chemistry , Iduronic Acid/chemistry , Indicators and Reagents , Magnetic Resonance Spectroscopy , Mitogens/pharmacology , Models, Molecular , Oligosaccharides/chemical synthesis , Oligosaccharides/chemistry , Spectrophotometry, Ultraviolet
12.
Talanta ; 38(8): 857-61, 1991 Aug.
Article in English | MEDLINE | ID: mdl-18965229

ABSTRACT

A method has been developed for the determination of dimethoxydithiophosphate (DDTP) by liquid-liquid extraction in a flow-injection analysis (FIA) system with detection by atomic-absorption spectrometry (AAS). It is based on the formation of the Cu(DDTP)(2) complex and its extraction into chloroform, and back-extraction of the copper with an ammonia buffer (pH 10). The method uses small amounts of samples, avoids handling errors and is fast and highly reproducible. It features a detection limit of 0.39 ppm DDTP (2.45 x 10(-6)M in the organic phase) and a relative standard deviation of 1.6%. The method has been applied to the determination of the organophosphorus pesticide malathion in an agricultural formulation.

13.
Prostaglandins Leukot Med ; 16(3): 359-69, 1984 Dec.
Article in English | MEDLINE | ID: mdl-6152053

ABSTRACT

The effect of lysine salicylate, flurbiprofen and sulphasalazine on human seminal prostaglandin profiles of six normal individuals was studied. All of them were treated with pharmacological doses of the three agents for four days with rest periods of eighteen days in between. Sulphasalazine produced less prostaglandin (PG) inhibition relative to the other two antiinflammatory drugs but in contrast only sulphasalazine induced sperm changes. Infertility status associated with the ingestion of therapeutic levels of sulphasalaziane is not directly related to the endogenous PGEs and 19-OH PGEs, the major prostanoids in human semen. PG determinations were carried out using gas chromatographic (GC) techniques.


Subject(s)
Alprostadil/analogs & derivatives , Anti-Inflammatory Agents/pharmacology , Flurbiprofen/pharmacology , Propionates/pharmacology , Prostaglandins E/analysis , Sulfasalazine/pharmacology , Adult , Chromatography, Gas , Fertility/drug effects , Humans , Lysine/analogs & derivatives , Lysine/pharmacology , Male , Salicylates/pharmacology , Semen/analysis , Spermatozoa/drug effects
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