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1.
Dalton Trans ; 52(47): 17731-17746, 2023 Dec 05.
Article in English | MEDLINE | ID: mdl-37916692

ABSTRACT

Copper(II) complexes have become a potential alternative to the use of platinum drugs in cancer therapy due to their multi-target mode of action. In this context, we report the syntheses of new mononuclear and dinuclear coordination compounds of this element, 1 and 2, derived from the ligand 5-methylsalicylaldehyde 2-furoyl hydrazone (H2L). All three compounds were structurally and spectroscopically characterized, both in the solid state and in solution. In 1, Cu is coordinated by three donor-atoms from the hydrazonic ligand and one chloride ion. H2L is deprotonated at the phenol oxygen. The dinuclear complex 2 is, on the other hand, a dimeric form of 1 in which the chloride ions of a pair of mononuclear units are lost and phenoxo bridges take their places, double-connecting the metal centres and resulting in a single species with the ligand fully deprotonated. The compounds were fairly stable in aqueous medium at room temperature. An experimental-theoretical combined approach demonstrated that all of them are able to bind human serum albumin (HSA), although at different sites and with diverse stoichiometries and affinities (as concluded by the calculated binding energies). In view of this, and due to the well-known antiproliferative activity of hydrazone-containing copper complexes, we consider the compounds presented in here promising, and believe that they deserve more profound studies regarding the assessment of their potential against tumour cell lines.


Subject(s)
Coordination Complexes , Serum Albumin, Human , Humans , Models, Molecular , Copper/chemistry , Ligands , Chlorides , Furans , Hydrazones/pharmacology , Coordination Complexes/pharmacology , Coordination Complexes/chemistry
2.
J Mol Model ; 27(8): 222, 2021 Jul 08.
Article in English | MEDLINE | ID: mdl-34236527

ABSTRACT

The crescent evolution of a global pandemic COVID-19 and its respiratory syndrome (SARS-Cov-2) has been a constant concern (Ghosh 2021; Khan et al. 2021; Alazmi and Motwalli 2020; Vargas et al. 2020). The absence of a proven and effective medication has compelled all the scientific community to search for a new drug. The use of known drugs is a faster way to develop new therapies. Molecular docking is a powerful tool (Gao et al. J Mol Model 10: 44-54, 2004; Singh et al. J Mol Model 18: 39-51, 2012; Schulz-Gasch and Stahl J Mol Model 9:47-57, 2003) to study the interaction of potential drugs with SARS-CoV-2, Alsalme et al. (2020) and Sanders et al. (2020) spike protein as a consequence the main goal of this article is to present the result of the study of an interaction between (R and S)-Linezolid with receptor-binding domain (RBD) of SARS-Cov-2 spike protein complexed with human Angiostensin-converting enzyme 2 (ACE2) (6vW1 - from PDB). The Linezolid enantiomers were optimized at B3LYP/6-311++G(2d,p) level of theory. Molecular docking of the system (S)-Linezolid⋯RBD⋯ACE2 and (R)-Linezolid⋯RBD⋯ACE2 was performed, the analysis was made using LigPlot+ and NCIplot software packages, to understand the intermolecular interactions. The UV-Vis and ECD of the complexes - (R and S)-Linezolid⋯RBD⋯ACE2 were performed in two layers with DFT/6-311++G(3df,2p) and DFT/6-31G(d), respectively. The results showed that only the (S)-Linezolid had a stable interaction with - 8.05 kcal.mol- 1, whereas all the R-enantiomeric configurations had positive values of binding energy. The (S)-Linezolid had the same interactions as in the (S)-Linezolid ⋯ Haluarcula morismortui Ribosomal system, where it is well-known the fact that the latter has biological activity. A specific interaction on the fluorine ring justified an attenuation on the ECD signal, in comparison to isolated species. Therefore, some biological activity of (S)-Linezolid with SARS-CoV-2 RBD was expected, indicated by the modification of its ECD signal and justified by a similar interaction in the S-Linezolid⋯Haluarcula marismortui Ribosomal system.


Subject(s)
Antiviral Agents/pharmacology , COVID-19 Drug Treatment , Linezolid/pharmacology , Molecular Docking Simulation , SARS-CoV-2/drug effects , Virus Internalization/drug effects , Angiotensin-Converting Enzyme 2/metabolism , Antiviral Agents/metabolism , Binding Sites , COVID-19/virology , Host-Pathogen Interactions , Humans , Kinetics , Linezolid/metabolism , Protein Binding , Protein Conformation , Receptors, Virus/metabolism , SARS-CoV-2/pathogenicity , Spike Glycoprotein, Coronavirus/metabolism , Structure-Activity Relationship
3.
Photochem Photobiol ; 97(5): 963-970, 2021 09.
Article in English | MEDLINE | ID: mdl-33657673

ABSTRACT

Singlet oxygen (1 O2 ) is the "active principle" in photodynamic therapy. Taurine chloramine (Tau-NHCl) and hydrogen peroxide (H2 O2 ) are well-tolerated and widely used antiseptics. Due to its mild oxidizing features and stability, Tau-NHCl can be directly used to treat skin diseases. We found that a diluted aqueous mixture of Tau-NHCl and H2 O2 acts as a slow and long-lasting potential source of 1 O2 . The reactions were studied by luminol-enhanced chemiluminescence. Evidence of the formation of 1 O2 was obtained using deuterium oxide, sodium azide and 9,10-Anthracenediyl-bis(methylene)dimalonic acid, a chemical trap of 1 O2 . The reaction was optimized, and a mechanism was proposed, including theoretical calculations at B3LYP/6-311++G(3df,2p) level of theory, adding D3Bj empirical dispersion and SMD (Water) solvent effects. Chloramines produced by the reactions between HOCl and L-alanine, 3-amino-1-propanesulfonic acid and gamma-aminobutyric acid were also prepared, and their reactivity and stability were compared with Tau-NHCl. We found that Tau-NHCl is more stable and adequate for the production of 1 O2 . In conclusion, we propose applying these drugs combination as a potential source of 1 O2 with applications for skin diseases treatment.


Subject(s)
Hydrogen Peroxide , Singlet Oxygen , Chloramines , Luminol , Oxygen , Taurine/analogs & derivatives
4.
J Mol Model ; 27(2): 39, 2021 Jan 15.
Article in English | MEDLINE | ID: mdl-33449204

ABSTRACT

The present work analyzes the electronic and molecular properties of the 819 ([Fe(II)4]Cℓ) and metal-free knot ligand complexes obtained from X-ray crystal structure of molecular 819 knot complex [Fe(II)4(PF6)7]Cℓ. The studies were theoretically investigated by means of DFT, TD-DFT, and ONIOM approaches. Basis sets functions from all-electron calculations for bromine, iodine, and iron atoms were adapted to be used along with relativistic effective core potential, while H, C, N, O, and Cℓ atoms were described by Pople basis sets. The diffusion effect of halogen into the 819 cavity, UV-Vis, and Electronic Circular Dichroism spectra were also analyzed. All calculations were performed using solvent effect through the SCRF/SMD model and dispersion effects by Grimme methodology. The value of mean separation distance between Cℓ and iron atom (7.218 Å) is in good agreement with X-ray experimental result (7.258 Å). Circular dichroism spectrum of metal-free 819 knot ligand was calculated and the maximum absorption in 262 nm, Δ𝜖 obtained was 67 L mol- 1 cm- 1. These results are qualitatively similar to those obtained experimentally, 295 nm and 80 L mol- 1 cm- 1, respectively. In this study, we report the electronic and molecular properties of the 819 ([Fe(II)4]Cl and metal-free knot ligand complexes and compare with the results obtained from X-ray crystallographic data of 819 knot complex [Fe(II)4(PF6)7]Cl. The 819 knot were investigated by means of DFT, TD-DFT, and ONIOM approaches. Basis sets functions from all-electron for Br, I, and Fe atoms were adapted to be used along with relativistic effective core potential, while H, C, N, O, and Cl atoms were described by Pople basis sets. The objective was to understand the stability of the 819 knot as a function of the substitution of the central halogen atom (Cl), and the signal in the circular dichroism spectra. From the equilibrium geometries, we have obtained good results for values of the bond distance, bond angle, and dihedral angle along the molecular structure when these variables are compared with the results obtained from X-ray data. The diffusion effect of halogen into the 819 cavity, UV-Vis, and Electronic Circular Dichroism spectra was also analyzed. Circular dichroism spectrum of metal-free 819 knot ligand was calculated, and the maximum absorption is in good agreement with the experimental value. The ONIOM methodology combined with the relativistic effective core potential and the atomic basis sets provide good results for systems with a complex topology, such as knots.

5.
J Mol Model ; 20(2): 2074, 2014 Feb.
Article in English | MEDLINE | ID: mdl-24504453

ABSTRACT

The potential energy surface of [P,C,O] system in the ground state was investigated by quantum chemical methods. Four different isomers were characterized at the B3LYP/aug-cc-pVTZ: COP (i1), cPCO (i2), PCO (i3), and CPO (i4). The linear species i3 is the global minimum in the ground state surface, while i4 is a bent structure, and i2 is a cyclic isomer. In view to evaluate the bond nature of each isomer, a QTAIM and a NBO analyses were applied. The triangular species presents a ring critical point which confirms its cyclic structure instead of a T-shape one. The stability increases in the following order: i3 > i2 > i1 > i4. The energy gap between i3 and i2 ranges from 49.20 to 51.15 kcal mol(-1). The reaction barrier energies that converge into the direction of i3 showed values around 10 kcal mol(-1), while the reverse barriers are considerably large (62.85 kcal mol(-1)). The i3 heat of formation at 298 K ranges from 11.83 to 19.41 kcal mol(-1).


Subject(s)
Energy Metabolism , Quantum Theory , Isomerism , Kinetics , Surface Properties , Thermodynamics
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