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1.
Sensors (Basel) ; 24(4)2024 Feb 11.
Article in English | MEDLINE | ID: mdl-38400348

ABSTRACT

Machine learning (ML) algorithms are increasingly applied to structure health monitoring (SHM) problems. However, their application to pile damage detection (PDD) is hindered by the complexity of the problem. A novel multi-sensor pile damage detection (MSPDD) method is proposed in this paper to extend the application of ML algorithms in the automatic identification of PDD. The time-series signals collected by multiple sensors during the pile integrity test are first processed by the traveling wave decomposition (TWD) theory and are then input into a hybrid one-dimensional (1D) convolutional and recurrent neural network. The hybrid neural network can achieve the automatic multi-task identification of pile damage detection based on the time series of MSPDD results. Finally, the analytical solution-based sample set is utilized to evaluate the performance of the proposed hybrid model. The outputs of the multi-task learning framework can provide a detailed description of the actual pile quality and provide strong support for the classification of pile quality as well.

2.
Sensors (Basel) ; 23(19)2023 Oct 08.
Article in English | MEDLINE | ID: mdl-37837138

ABSTRACT

The in-hole multipoint traveling wave decomposition (MPTWD) method is developed for detecting and characterizing the damage of cast in situ reinforced concrete (RC) piles. Compared with the results of MPTWD, the results of the in-hole MPTWD reconstruction technique are found ideal for evaluating the lower-part pile integrity and are further utilized to establish a data-driven machine-learning framework to detect and quantify the degree of damage. Considering the relatively small number of field test samples of the in-hole MPTWD method at this stage, an analytical solution is employed to generate sufficient samples to verify the feasibility and optimize the performance of the machine learning modeling framework. Two types of features extracted by the distributed sampling and statistical and signal processing techniques are applied to three machine-learning classifiers, i.e., logistic regression (LR), extreme gradient boosting (XGBoost) and multilayer perceptron (MLP). The performance of the data-driven machine-learning framework is then evaluated through a specific case study. The results demonstrate that all three classifiers perform better when employing the statistical and signal processing techniques, and the total of 24 extracted features are sufficient for the machine-learning algorithms.

3.
Sensors (Basel) ; 22(14)2022 Jul 16.
Article in English | MEDLINE | ID: mdl-35891012

ABSTRACT

Low-strain tests are widely utilized as a nondestructive approach to assess the integrity of newly piled foundations. So far, the examination of existing pile foundations is becoming an indispensable protocol for pile recycling or post-disaster safety assessment. However, the present low-strain test is not capable of testing existing pile foundations. In this paper, the torsional low-strain test (TLST) is proposed to overcome this drawback. Both the upward and downward waves are considered in the TLST wave propagation model established in this paper so that a firm theoretical basis is grounded for the test signal interpretations. A concise semi-analytical solution is derived and its rationality is verified by comparisons with the existing solutions for newly piled foundations and the finite element results. The main conclusions of this study can be drawn as follows: (1). by placing the sensors where the incident wave is applied, the number of reflected signals can be minimized; (2). the defects can be more evidently identified if the incident wave/sensors are input/installed close to the superstructure/pile head.

4.
Appl Radiat Isot ; 187: 110323, 2022 Sep.
Article in English | MEDLINE | ID: mdl-35724548

ABSTRACT

The nanoparticles of fly ash (FA) were obtained by high energy ball milling of their parent Class C kind for subsequent synthesis of poly(acrylamide-acrylic acid)/fly ash (poly(AM-AA)/FA) nanocomposite. The gamma-radiation induced polymerization was applied to achieve this concern. Different techniques were utilized to characterize such nanocomposite. The sorption abilities of the synthesized nanocomposite toward 60Co2+ and 134Cs + radionuclides were evaluated using batch and fixed-bed column approaches. Batches were designed at constants of solution pH (6.5-7.0 ± 0.02), nanocomposite particle size and dosage (106-250 µm and 0.1 L/g, respectively). The microstructure of such nanocomposite (<100 nm) was mainly amorphous with porous rough surfaces containing homogenous distribution of the incorporated nano-FA. About 56.46 and 47.9 mg/g of Co2+ and Cs+ were sorbed at equilibrium with an ion exchange reaction mechanism. Langmuir, Freundlich and Dubinin-Radushkevich D-R isotherm model parameters were calculated indicating the favorability of all sorption processes. The spontaneous and endothermic natures of sorption were observed by the calculated ΔG° and ΔH° thermodynamic parameters, respectively. Thomas, Yoon-Nelson and Adams Bohart models were fitted to the fixed-bed column data at varied conditions. The predicted sorption capacities of Thomas were very close to those obtained experimentally. Modeling of the fixed-bed column data dominates that the external mass transfer kinetics was predominant in the initial parts of the fixed-beds. Values required for retaining 50% of the initial sorbate concentration were extended from 89.05 to 68.55 to 177.2 and 149.3 min for 60Co2+ and 134Cs + radionuclides, respectively, by increasing bed depth from 1.5 to 3.0 cm. Modification of FA to its nano-scale form with the subsequent synthesis of a nanocomposite material having sorption capabilities made a duplicate beneficial environmental concern.


Subject(s)
Nanocomposites , Water Pollutants, Chemical , Adsorption , Cesium , Coal Ash , Cobalt , Hydrogen-Ion Concentration , Kinetics , Solutions , Thermodynamics , Water/chemistry
5.
Asian Pac J Cancer Prev ; 23(5): 1733-1740, 2022 May 01.
Article in English | MEDLINE | ID: mdl-35633559

ABSTRACT

BACKGROUND: Repopulation of tumor cells during radiotherapy of transitional cell bladder carcinoma is believed to be a significant cause for treatment failure, and it was reported from clinical observations that the local control rate decreased with a prolonged treatment time, so accelerated hypofractionated radiotherapy with concurrent capecitabine may provide good local control in elderly patients unfit for surgery. The study aimed to evaluate the tolerability and efficacy of hypofractionated radiotherapy with capecitabine in elderly patients with urothelial carcinoma. METHODS: Between October 2019 and September 2021, 30 patients with muscle-invasive bladder cancer staged T2-4aN0M0, underwent transurethral resection of bladder tumor followed by capecitabine (825 mg/m2 orally, 2 times a day) and radiation therapy (55 Gy in 2.2 Gy per fraction). RESULTS: Thirty patients with a median age of 73.5 years (range, 65-85) were included in our study. Most patients had T2N0, and T3N0 (28 patients), furthermore 73.3% had an intermediate-grade tumor, Transurethral resection of bladder tumor was incomplete in 43.3. No grade 4 toxicity was documented. Grade 3 urinary toxicities occurred in two patients requiring hospitalization and temporal radiation cessation. Regarding late toxicities, no grade 3 or 4 toxicity was reported. A complete response was obtained in 56.7% of  patients. After a median follow-up of 16 months, the locoregional control rate was 63%. Overall survival, local failure-free survival, and event-free survival were 100%, 93.3%, 80% and 43.3%, 33.3%, 30% at one and two years respectively. CONCLUSION: Hypofractionated chemoradiation with capecitabine, appears to be an effective and well-tolerated curative treatment strategy in the selected elderly population with urothelial carcinoma.


Subject(s)
Carcinoma, Transitional Cell , Urinary Bladder Neoplasms , Aged , Aged, 80 and over , Capecitabine , Carcinoma, Transitional Cell/drug therapy , Carcinoma, Transitional Cell/pathology , Humans , Muscles/pathology , Radiation Dose Hypofractionation , Urinary Bladder Neoplasms/drug therapy , Urinary Bladder Neoplasms/pathology
6.
Environ Technol ; 43(16): 2405-2417, 2022 Jun.
Article in English | MEDLINE | ID: mdl-33494654

ABSTRACT

In this study anodic oxidation of Cr2(SO4)3 was carried out in an air-sparged divided parallel plate cell. Variables studied were current density, Cr2(SO4)3 concentration, and superficial air velocity. The rate constant of Cr2(SO4)3 oxidation was found to increase with increasing current density and Cr2(SO4)3 concentration. The effect of air sparging was found to depend on Cr2(SO4)3 concentrations, at high Cr2(SO4)3 concentration (> 0.1 M) air sparging does not affect the rate constant of the reaction denoting that the reaction is charge transfer controlled. As Cr2(SO4)3 concentration decreases below 0.1 M the reaction becomes under mixed diffusion and chemical control and the rate constant increases with increasing air superficial velocity, the lower Cr2(SO4)3 concentration the higher the contribution of diffusion to the reaction rate. The current efficiency of the process ranged from 20 to 85% depending on current density and Cr2(SO4)3 concentration. Electrical energy consumption which ranged from 1.8 to 14.4 kW h/kg of Cr6+ was found to increase with increasing current density and decreases with increasing Cr2(SO4)3 concentration. Air sparging was found to decrease electrical energy consumption in the case of dilute solutions << 0.1 M Cr2(SO4)3.

7.
Appl Radiat Isot ; 172: 109690, 2021 Jun.
Article in English | MEDLINE | ID: mdl-33773202

ABSTRACT

The present study introduces a new approach based on an irradiated tin target's impurity to produce a125Sb/125mTe radioisotope generator. A prepared generator gel matrix of zirconium-silico-tungstate was loaded with 6660 MBq (180 mCi) activity of the separated antimony. The loading and elution method has been studied as a function of the concentration of H2SO4 acid solution. The effect of mild oxidant (ascorbic acid) in the loading and complexing agent (acetic acid) in elution was investigated to improve the generator's elution profile. A mixture of (0.5 M) ascorbic acid and (0.5 M) H2SO4 acid solution as a loading solution resulted in a maximum distribution of 125Sb. In comparison, using (0.4 M) acetic acid as an eluent solution 125mTe yield reached 88.7% and minimised percentage of 125Sb breakthrough was obtained (<0.01%).

8.
J Hazard Mater ; 403: 123945, 2021 02 05.
Article in English | MEDLINE | ID: mdl-33264990

ABSTRACT

Sorption of fission products onto polycondensed aluminosilicates (PC-AS(s)) is a relatively recent and gets out the mechanisms by which the formers are trapped. Here, PC feldspar (PC-FD), perlite (PC-PR) and their blend (PC-FDPR) were synthesized by the alkaline activation using Na-/K-silicates at Si-modulus of 1.35. XRD patterns revealed the semi-crystalline natures of sorbents. Na- and K-feldspars were detected in PC-FD while Na-based carbonate crystals were detected in others. Components of the poly(sialate-disiloxo) structure were detected in FT-IR spectra. Thermographs were deconvoluted and the amounts of the sticking and zeolitic water were estimated. Kinetic batches for sorption of 134Cs and 152+154Eu onto the elaborated yields were constructed. Ranking of sorbed amounts (qe) was varied from 134Cs (PC-FDPR>PC-FD>PC-PR) to 152+154Eu (PC-PR>PC-FD>PC-FDPR). Maximum qe was recorded at elevated temperature (323 K) to be 4.28 and 1.45 mg/g for 134Cs/PC-FDPR and 152+154Eu/PC-PR, respectively. Along all batches, chemi-sorption mechanism is common denominator. The effective diffusion coefficients (Di) were in the order of 10-14 m2/s. Both PC-FD and PC-FDPR recorded greater Di values of 134Cs than 152+154Eu. The low values of Ea (kJ/mol) reflected the weak adsorbats-adsorbents interactions. While, the high negative values of ∆S‡ suggested that the studied radionuclides were sorbed in associative reaction mechanism.

9.
J Hazard Mater ; 375: 149-160, 2019 08 05.
Article in English | MEDLINE | ID: mdl-31054532

ABSTRACT

Individual metakaolin-based alkali activated binder (AAB) was utilized to optimize binary and ternary ones having feldspar/metakaolin and slag/feldspar+metakaolin ratios of 0.3 and 0.4, respectively. These three AABs had the ability to directly solidify 10.0 (FMK0-10R), 8.0 (FMK3-8R) and 12.0% (S4FMK3-12R) of the nuclear grade KY-2 beads, respectively, recording compressive strength values greater than twice the waste acceptance criteria. Leaching of 134Cs, 60Co and 152+154Eu, whether singularly or multiply loaded, was assessed. The multi-radionuclidic systems recorded greater leached fractions in the order of: 152+154Eu>134Cs>60Co. Among the studied systems, S4FMK3-12R formulations recorded the lowest diffusion coefficient values (D). Gamma-irradiation made a desired influence on all studied leaching systems with inverse relationships with the applied irradiation doses. Irradiating the optimized ternary AAB with 3.0 KGy (S4FMK3-12R-É£3) yielded the lowest D value (6.65 × 10-13 cm2/s), when single component-60Co was diffused. The leachability indexes of all irradiated AABs were not only greatly exceeded the value of 6 but also sometimes be twice such value. XRD, FT-IR and SEM examinations of S4FMK3, S4FMK3-12R and S4FMK3-12R-É£3 reflected their multi-layered semicrystalline natures and to what extent these AABs and the solidified beads had good and poor radiation stabilities, respectively, with a proposed three-step mechanism of such instability.

10.
Hum Exp Toxicol ; 38(8): 962-973, 2019 Aug.
Article in English | MEDLINE | ID: mdl-31018711

ABSTRACT

OBJECTIVE: To investigate the ability of docosahexaenoic acid (DHA)-loaded silver nanoparticles (AgNPs) in facilitating the incorporation of DHA in the cell membrane, improve cell membrane structure, and attenuate endothelial dysfunction in experimental diabetes. METHODS: DHA/AgNPs were prepared using a nanoprecipitation technique. Fifty male albino rats were used in this study; 10 of them were served as the control group and 40, as the experimental groups, were injected with streptozotocin. Then, the experimental groups were subdivided into diabetic, diabetic treated with DHA, diabetic treated with AgNPs, and diabetic treated with DHA/AgNPs groups. RESULTS: DHA/AgNPs have small spherical size as proved from ultraviolet-visible spectroscopy, transmission electron microscope, dynamic light scattering, and scanning electron microscope techniques. Cell membrane cholesterol and triglycerides showed a significant elevation in the diabetic group compared to the control, but treatment with DHA and DHA/AgNPs caused a significant reduction in both. Treatment with AgNPs and DHA/AgNPs caused a significant improvement in asymmetric dimethylarginine and nitric oxide levels compared to the diabetic group. Cell membrane fatty acids showed that omega-6 polyunsaturated fatty acids (PUFAs) were significantly elevated, while omega-3 PUFA were significantly reduced in the diabetic group compared to the control. There is a significant improvement in the levels of fatty acids in all groups after treatment with DHA, silver, or DHA/AgNPs. CONCLUSION: DHA/AgNPs are potent agents for the improvement of diabetic complication and endothelial dysfunction in experimental diabetes.


Subject(s)
Diabetes Mellitus, Experimental/drug therapy , Docosahexaenoic Acids/administration & dosage , Metal Nanoparticles/administration & dosage , Silver/administration & dosage , Animals , Arginine/analogs & derivatives , Arginine/metabolism , Aryldialkylphosphatase/blood , Blood Glucose/analysis , DNA Damage , Diabetes Mellitus, Experimental/blood , Diabetes Mellitus, Experimental/metabolism , Docosahexaenoic Acids/chemistry , Insulin/blood , Male , Membrane Lipids/metabolism , Metal Nanoparticles/chemistry , Nitric Oxide/metabolism , Rats, Wistar , Silver/chemistry
11.
J Hazard Mater ; 344: 913-924, 2018 Feb 15.
Article in English | MEDLINE | ID: mdl-29195102

ABSTRACT

Radio-cesium constitutes major environmental threats. Sorption of hazardous species onto geopolymeric sorbents is relatively recent and may give information about the retention mechanisms when geopolymers are applied to immobilize radwastes. Here, Na-MK, K-MK, Na-MKBFS, and K-MKBFS geopolymeric sorbents were synthesized from metakaolin (MK) and blast furnace slag (BFS) and were characterized using XRD, XRF, FT-IR, DTA/TGA and SEM. FT-IR/XRF results clarified the impact of mono-valent alkali cation (M+) in dividing the sorbents into Al-rich (sodium-based) and Si-rich (potassium-based). All sorbents were amorphous to semi-crystalline containing mica-phyllosilicates (greater in Si-rich), tobermorites (greater in MKBFS-based), gehlenite, calcite, quartz, hematite and hydrotalcite. Isotherms of 134Cs radionuclide sorption were constructed, being regular with a positive temperature effect. Al-rich sorbents gave higher sorption capacities than Si-rich ones. Na-MK sorbent recorded the more distinctive sorption capacity (74.95mg/g; at 333K). Langmuir, Freundlich and D-R models were used to disclose the capacities and mechanisms governing the sorption processes. Sorption of Cs+ onto the examined sorbents was favorable. All systems were controlled by ion exchange mechanism, except 134Cs/K-MK system which was controlled by physi- sorption mechanism. 134Cs/Na-MK GP system was the only spontaneous among all. The endothermic natures were the common denominator between the tested systems.

12.
Bioresour Technol ; 241: 152-160, 2017 Oct.
Article in English | MEDLINE | ID: mdl-28554101

ABSTRACT

The effect of co-culturing C. beijerinckii and C. saccharoperbutylacetonicum for H2 production using mono- and co-substrates of glucose, starch, and cellulose was assessed. Monod kinetic parameters (K, maximum specific substrate utilization rate; and Ks, half-saturation constant) of the C. beijerinckii, C. saccharoperbutylacetonicum, and the co-culture were determined. Co-cultures utilizing glucose competed for the substrate, but showed enhancement for utilizing starch. The maximum values for K on glucose and starch were 0.48g substrate/gVSS.h achieved by C. saccharoperbutylacetonicum mono-culture and 0.39g substrate/gVSS.h achieved by the co-culture, respectively. The average Ks for all mono- and co-culture experiments was 0.93±0.03g/L. Acetate, butyrate, and propionate were the main fermentation products for all experiments. Maximum H2 production yields on glucose (2.69mol/molglucose) and starch (1.07mol/molhexose) were achieved by C. beijerinckii and C. saccharoperbutylacetonicum mono-cultures, respectively; however, neither culture was able to degrade cellulose as a mono-substrate.


Subject(s)
Clostridium beijerinckii , Coculture Techniques , Clostridium , Fermentation , Kinetics
13.
Bioresour Technol ; 192: 741-7, 2015 Sep.
Article in English | MEDLINE | ID: mdl-26101964

ABSTRACT

In this study, batch tests were conducted to investigate the performance of mesophilic anaerobic digester sludge (ADS) at thermophilic conditions and estimate kinetic parameters for co-substrate fermentation. Starch and cellulose were used as mono-substrate and in combination as co-substrates (1:1 mass ratio) to conduct a comparative assessment between mesophilic (37 °C) and thermophilic (60 °C) biohydrogen production. Unacclimatized mesophilic ADS responded well to the temperature change. The highest hydrogen yield of 1.13 mol H2/mol hexose was observed in starch-only batches at thermophilic conditions. The thermophilic cellulose-only yield (0.42 mol H2/mol hexose) was three times the mesophilic yield (0.13 mol H2/mol hexose). Interestingly, co-fermentation of starch-cellulose at mesophilic conditions enhanced the hydrogen yield by 26% with respect to estimated mono-substrate yields, while under thermophilic conditions no enhancement in the overall yield was observed. Interestingly, the estimated overall Monod kinetic parameters showed higher rates at mesophilic than thermophilic conditions.


Subject(s)
Biofuels/microbiology , Bioreactors/microbiology , Carbohydrate Metabolism/physiology , Hydrogen/metabolism , Models, Biological , Starch/metabolism , Coculture Techniques/methods , Computer Simulation , Hydrogen/isolation & purification , Temperature
14.
J Mycol Med ; 24(2): e35-42, 2014 Jun.
Article in English | MEDLINE | ID: mdl-24361402

ABSTRACT

The aim of the present study was to evaluate different biological activities of the fungus Chaetomium globosum (family Chaetomiaceae). The evaluation was done through testing its antimicrobial, antioxidant and anticancer effects. C. globosum was isolated from the Cucumber soil (rhizosphere) and caused inhibition of the mycelial growth of Fusarium solani, Rhizoctonia solani and Sclerotium rolfsii in the biculture test. Petroleum ether and ethyl acetate extracts of the liquid culture of C. globosum showed potent in vitro antioxidant activity. C. globosum proved potent antibacterial activity against Bacillus subtilis, Escherichia coli and Pseudomonas fluorescens. It also recorded significant antifungal activity against Candida albicans, F. solani, Fusarium oxysporum, R. solani and Pythium ultimum. It exerted cytotoxic effect on human hepatocellular carcinoma cell line (HepG2). Unsaponifiable and saponifiable matters of the petroleum ether extract showed the presence of hydrocarbons, sterols and fatty acids. The ethyl acetate extract showed the presence of prenisatin, chrysophanol, chrysazin, chaetoviridin A and B. The isolated secondary metabolites proved significant antioxidant and antimicrobial activity on B. subtilis, E. coli and R. solani. In conclusion, this fungus showed different biological activities. Further studies must be done to apply its use in the agricultural and medicinal field.


Subject(s)
Biological Assay/methods , Chaetomium/chemistry , Anti-Infective Agents/isolation & purification , Anti-Infective Agents/pharmacology , Antineoplastic Agents/isolation & purification , Antineoplastic Agents/pharmacology , Antioxidants/isolation & purification , Antioxidants/pharmacology , Bacillus subtilis/drug effects , Bacillus subtilis/growth & development , Candida/drug effects , Candida/growth & development , Escherichia coli/drug effects , Escherichia coli/growth & development , Fusarium/drug effects , Fusarium/growth & development , Humans , Microbial Sensitivity Tests , Pseudomonas fluorescens/drug effects , Pseudomonas fluorescens/growth & development , Pythium/drug effects , Pythium/growth & development
15.
Bioresour Technol ; 111: 122-6, 2012 May.
Article in English | MEDLINE | ID: mdl-22366605

ABSTRACT

A comparative evaluation of single-stage and two-stage anaerobic digestion processes for biomethane and biohydrogen production using thin stillage was performed to assess the impact of separating the acidogenic and methanogenic stages on anaerobic digestion. Thin stillage, the main by-product from ethanol production, was characterized by high total chemical oxygen demand (TCOD) of 122 g/L and total volatile fatty acids (TVFAs) of 12 g/L. A maximum methane yield of 0.33 L CH(4)/gCOD(added) (STP) was achieved in the two-stage process while a single-stage process achieved a maximum yield of only 0.26 L CH(4)/gCOD(added) (STP). The separation of acidification stage increased the TVFAs to TCOD ratio from 10% in the raw thin stillage to 54% due to the conversion of carbohydrates into hydrogen and VFAs. Comparison of the two processes based on energy outcome revealed that an increase of 18.5% in the total energy yield was achieved using two-stage anaerobic digestion.


Subject(s)
Anaerobiosis , Crops, Agricultural/metabolism , Biofuels , Fatty Acids/metabolism , Hydrogen/metabolism , Methane/metabolism , Volatile Organic Compounds/metabolism
16.
Drug Discov Ther ; 4(5): 341-8, 2010 Oct.
Article in English | MEDLINE | ID: mdl-22491237

ABSTRACT

Evaluation of the activity of an aqueous alcoholic extract obtained from the leaves of Heimia myrtifolia (Lythraceae) by determining its stimulating effect on two human osteoblastic cell lines HOS58 and SaOS-2 indicated its potential for use in the prevention and treatment of osteoporosis. In addition, the extract was found to significantly increase the mineralization of cultivated human bone cell SaOS-2, in which a strong dose-dependent increase was observed. A phytochemical investigation of the extract also confirmed that H. myrtifolia is capable of synthesizing and accumulating appreciable amounts of several phenolics, thus leading to the isolation and characterization of sixteen of these constituents. Identified among these isolates were a new natural product, 1,6-di-O-dehydrotrigalloyl-ß-D-(4)C(1)-glucopyranose, and a rare natural product (this marks its second report), 5,7,4'-trihydroxy-3-methoxyflavanone (dihydrokaempferol-3-O-methyl ether). Structures of these isolates were fully elucidated on the basis of conventional methods of analysis and confirmed by ESI/MS and (1)H and (13)C-NMR analysis.


Subject(s)
Lythraceae , Polyphenols , Antioxidants/pharmacology , Bone Neoplasms , Humans , Osteosarcoma , Plant Extracts/pharmacology , Plant Leaves/chemistry , Polyphenols/isolation & purification
17.
J Laryngol Otol ; 124(2): 152-60, 2010 Feb.
Article in English | MEDLINE | ID: mdl-19968888

ABSTRACT

OBJECTIVE: This study investigated allergic fungal rhinosinusitis cases, and aimed to compare the detection of fungi in sinus aspirate by culture and by polymerase chain reaction assay, and to relate the presence of fungi in the nasal sinuses to the type of fungal allergen causing disease. METHODS: Sixty-eight cases of allergic fungal rhinosinusitis underwent fungal culture and polymerase chain reaction assay for universal fungal, aspergillus and bipolaris DNA. Aspergillus-specific immunoglobulin E levels were measured in sinus aspirate, and total serum immunoglobulin E levels were calculated. A control group of 10 cases was included in the study. RESULTS: Of the 68 allergic fungal rhinosinusitis cases, only 42 (61.7 per cent) had positive fungal cultures; of the 10 controls, only three (30 per cent) had positive cultures. Species from the dematiaceous family were most commonly grown, being isolated in 30 cases (71.4 per cent). Bipolaris was the most commonly isolated species (18 cases) followed by curvularia (11 cases) and alternaria (one case). Polymerase chain reaction assay detected fungal DNA in all the allergic fungal rhinosinusitis cases and also in four controls (40 per cent). Ten patients (of 68; 14.7 per cent) were positive for Aspergillus fumigatus specific immunoglobulin E. The mean concentration of this immunoglobulin was 11.32 +/- 4.12 IU/ml in patients and 0 IU/ml in controls, a statistically significant difference. CONCLUSION: Detection of fungal DNA in nasal aspirate by polymerase chain reaction was superior to fungal cultures as a method of detecting fungal growth. In allergic fungal rhinosinusitis, fungal growth is not always accompanied by an allergic reaction.


Subject(s)
DNA, Fungal/isolation & purification , Fungi/isolation & purification , Rhinitis/microbiology , Sinusitis/microbiology , Aspergillus fumigatus/isolation & purification , Base Sequence , Case-Control Studies , Culture Media , Humans , Immunoglobulin E/analysis , Mucus/microbiology , Paranasal Sinuses/microbiology , Polymerase Chain Reaction/methods , Rhinitis/immunology , Sinusitis/immunology
18.
Proc Natl Acad Sci U S A ; 107(1): 326-31, 2010 Jan 05.
Article in English | MEDLINE | ID: mdl-20018675

ABSTRACT

We report a previously undescribed bacterial behavior termed electrokinesis. This behavior was initially observed as a dramatic increase in cell swimming speed during reduction of solid MnO(2) particles by the dissimilatory metal-reducing bacterium Shewanella oneidensis MR-1. The same behavioral response was observed when cells were exposed to small positive applied potentials at the working electrode of a microelectrochemical cell and could be tuned by adjusting the potential on the working electrode. Electrokinesis was found to be different from both chemotaxis and galvanotaxis but was absent in mutants defective in electron transport to solid metal oxides. Using in situ video microscopy and cell tracking algorithms, we have quantified the response for different strains of Shewanella and shown that the response correlates with current-generating capacity in microbial fuel cells. The electrokinetic response was only exhibited by a subpopulation of cells closest to the MnO(2) particles or electrodes. In contrast, the addition of 1 mM 9,10-anthraquinone-2,6-disulfonic acid, a soluble electron shuttle, led to increases in motility in the entire population. Electrokinesis is defined as a behavioral response that requires functional extracellular electron transport and that is observed as an increase in cell swimming speeds and lengthened paths of motion that occur in the proximity of a redox active mineral surface or the working electrode of an electrochemical cell.


Subject(s)
Cell Movement/physiology , Electrochemistry , Electron Transport/physiology , Shewanella/physiology , Bioelectric Energy Sources , Electrodes , Manganese Compounds/chemistry , Metals/chemistry , Microscopy, Video , Oxidation-Reduction , Oxides/chemistry
19.
Appl Environ Microbiol ; 75(5): 1445-9, 2009 Mar.
Article in English | MEDLINE | ID: mdl-19124590

ABSTRACT

Here, we report simultaneous surface profile measurements of several bacterial species involved in microbially influenced corrosion and their solid-surface interfaces by using vertical scanning interferometry. The capacity to nondestructively quantify microscale topographic changes beneath a single bacterium without its removal offers a unique opportunity to examine in vivo microbe-surface interactions.


Subject(s)
Bacteria/metabolism , Corrosion , Interferometry/methods , Minerals/metabolism
20.
Geobiology ; 6(3): 232-41, 2008 Jun.
Article in English | MEDLINE | ID: mdl-18498526

ABSTRACT

This manuscript is dedicated to our friend, mentor, and coauthor Dr Terry Beveridge, who devoted his scientific career to advancing fundamental aspects of microbial ultrastructure using innovative electron microscopic approaches. During his graduate studies with Professor Robert Murray, Terry provided some of the first glimpses and structural evaluations of the regular surface arrays (S-layers) of Gram-negative bacteria (Beveridge & Murray, 1974, 1975, 1976a). Beginning with his early electron microscopic assessments of metal binding by cell walls from Gram-positive bacteria (Beveridge & Murray, 1976b, 1980) and continuing with more than 30 years of pioneering research on microbe-mineral interactions (Hoyle & Beveridge, 1983, 1984; Ferris et al., 1986; Gorby et al., 1988; Beveridge, 1989; Mullen et al., 1989; Urrutia Mera et al., 1992; Mera & Beveridge, 1993; Brown et al., 1994; Konhauser et al., 1994; Beveridge et al., 1997; Newman et al., 1997; Lower et al., 2001; Glasauer et al., 2002; Baesman et al., 2007), Terry helped to shape the developing field of biogeochemistry. Terry and his associates are also widely regarded for their research defining the structure and function of outer membrane vesicles from Gram-negative bacteria that facilitate processes ranging from the delivery of pathogenic enzymes to the possible exchange of genetic information. The current report represents the confluence of two of Terry's thematic research streams by demonstrating that membrane vesicles produced by dissimilatory metal-reducing bacteria from the genus Shewanella catalyze the enzymatic transformation and precipitation of heavy metals and radionuclides. Under low-shear conditions, membrane vesicles are commonly tethered to intact cells by electrically conductive filaments known as bacterial nanowires. The functional role of membrane vesicles and associated nanowires is not known, but the potential for mineralized vesicles that morphologically resemble nanofossils to serve as palaeontological indicators of early life on Earth and as biosignatures of life on other planets is recognized.


Subject(s)
Cell Membrane/metabolism , Cell Surface Extensions/metabolism , Metals, Heavy/metabolism , Shewanella putrefaciens/metabolism , Transport Vesicles/metabolism , Electrophoresis, Polyacrylamide Gel , Magnetic Resonance Spectroscopy , Microscopy, Atomic Force , Microscopy, Electron, Transmission , Oxidation-Reduction , Transport Vesicles/ultrastructure
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