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1.
Public Health Action ; 5(4): 249-54, 2015 Dec 21.
Article in English | MEDLINE | ID: mdl-26767179

ABSTRACT

SETTING: Tanzania is a high-burden country for tuberculosis (TB), and prisoners are a high-risk group that should be screened actively, as recommended by the World Health Organization. Screening algorithms, starting with chest X-rays (CXRs), can detect asymptomatic cases, but depend on experienced readers, who are scarce in the penitentiary setting. Recent studies with patients seeking health care for TB-related symptoms showed good diagnostic performance of the computer software CAD4TB. OBJECTIVE: To assess the potential of computer-assisted screening using CAD4TB in a predominantly asymptomatic prison population. DESIGN: Cross-sectional study. RESULTS: CAD4TB and seven health care professionals reading CXRs in local tuberculosis wards evaluated a set of 511 CXRs from the Ukonga prison in Dar es Salaam. Performance was compared using a radiological reference. Two readers performed significantly better than CAD4TB, three were comparable, and two performed significantly worse (area under the curve 0.75 in receiver operating characteristics analysis). On a superset of 1321 CXRs, CAD4TB successfully interpreted >99%, with a predictably short time to detection, while 160 (12.2%) reports were delayed by over 24 h with conventional CXR reading. CONCLUSION: CAD4TB reliably evaluates CXRs from a mostly asymptomatic prison population, with a diagnostic performance inferior to that of expert readers but comparable to local readers.


Contexte : La Tanzanie est lourdement frappée par la tuberculose (TB) et les prisonniers sont un groupe à haut risque qui devrait bénéficier d'un dépistage actif, comme le recommande l'Organisation Mondiale de la Santé. Les algorithmes de dépistage qui débutent par une radiographie pulmonaire peuvent détecter des cas asymptomatiques, mais ils requièrent des lecteurs de radiographies expérimentés, qui sont rares dans le contexte pénitentiaire. Des études récentes sur des patients sollicitant des soins pour des symptômes liés à la TB ont mis en évidence une bonne performance diagnostique du logiciel CAD4TB.Objectif : Evaluer le potentiel d'un dépistage assisté par ordinateur en utilisant CAD4TB au sein d'une population carcérale en majorité asymptomatique.Schéma : Étude transversale.Résultats : CAD4TB et sept professionnels de santé lisant des radiographies dans des services de TB locaux ont évalué un ensemble de 511 radiographies pulmonaires provenant de la prison d'Ukonga à Dar es Salaam et les performances ont été comparées grâce à une radiographie de référence. Deux lecteurs ont été significativement plus performants que CAD4TB, trois ont été comparables et deux ont été significativement moins bons (zone sous la courbe de 0,75 dans l'analyse ROC ­fonction d'efficacité du receveur). Sur un ensemble de 1321 radiographies pulmonaires, CAD4TB en a interprété avec succès plus de 99% avec un délai de détection prévisible court, tandis que 160 (12,2%) réponses ont été retardées de plus de 24 h avec la méthode de lecture conventionnelle.Conclusion : CAD4TB évalue de manière fiable les radiographies pulmonaires dans une population en majorité asymptomatique de détenus, avec une performance diagnostique inférieure à celle de lecteurs experts mais comparable à celle des lecteurs locaux.


Marco de referencia: Tanzania es un país con una alta tasa de morbilidad por tuberculosis (TB) y las personas en los establecimientos penitenciarios constituyen un grupo de alto riesgo de contraer la enfermedad; en esta población se debe practicar la detección sistemática activa como lo recomienda la Organización Mundial de la Salud. Los algoritmos de detección cuya etapa inicial es la radiografía de tórax pueden detectar los casos asintomáticos, pero su eficacia depende de la experiencia del profesional que interpreta las imágenes y esta competencia es escasa en los entornos penitenciarios. Algunos estudios recientes de pacientes que buscan atención sanitaria por síntomas asociados con la TB han revelado un buen rendimiento diagnóstico con la utilización del programa informático CAD4TB. Objetivo: Evaluar la utilidad de la detección sistemática de la TB asistida por el programa CAD4TB, en una población penitenciaria en su mayoría asintomática.Método: Fue este un estudio de tipo transversal.Resultados: Siete profesionales de atención sanitaria de los servicios locales de TB analizaron 511 radiografías de tórax provenientes de la prisión de Ukonga, en Dar es-Salam, con la ayuda del programa CAD4TB; se preparó un conjunto de referencia radiográfica de lectura con el fin de evaluar el rendimiento diagnóstico. El desempeño de dos de los lectores fue significativamente superior al resultado del programa CAD4TB, tres lectores obtuvieron una puntuación comparable al programa y en dos lectores se observó un rendimiento significativamente inferior (área bajo la curva: 0,75 en el análisis de eficacia diagnóstica). En un conjunto especial de 1321 radiografías de tórax el programa CAD4TB interpretó eficazmente más del 99%, con un corto lapso previsible hasta la detección, en contraste con la lectura clásica de las radiografías que dio lugar a un retraso superior a 24 horas en 160 informes (12,2%).Conclusión: El programa CAD4TB realizó una evaluación fiable de las radiografías provenientes de una población penitenciaria en su mayor parte asintomática. El rendimiento diagnóstico del programa fue inferior al rendimiento de los lectores expertos, pero comparable con el rendimiento de los lectores locales.

3.
Trop Med Int Health ; 17(4): 497-506, 2012 Apr.
Article in English | MEDLINE | ID: mdl-22296265

ABSTRACT

UNLABELLED: OBJECTIVE To analyse survival and retention rates of the Tanzanian care and treatment programme. METHODS: Routine patient-level data were available from 101 of 909 clinics. Kaplan-Meier probabilities of mortality and attrition after ART initiation were calculated. Mortality risks were corrected for biases from loss to follow-up using Egger's nomogram. Smoothed hazard rates showed mortality and attrition peaks. Cox regression identified factors associated with death and attrition. Median CD4 counts were calculated at 6 month intervals. RESULTS: In 88,875 adults, 18% were lost to follow up 12 months after treatment initiation, and 36% after 36 months. Cumulative mortality reached 10% by 12 months (15% after correcting for loss to follow-up) and 14% by 36 months. Mortality and attrition rates both peaked within the first six months, and were higher among males, those under 45 kg and those with CD4 counts below 50 cells/µl at ART initiation. In the first year on ART, median CD4 count increased by 126 cells/µl, with similar changes in both sexes. CONCLUSION: Earlier diagnoses through expanded HIV testing may reduce high mortality and attrition rates if combined with better patient tracing systems. Further research is needed to explore reasons for attrition.


Subject(s)
Antiretroviral Therapy, Highly Active/statistics & numerical data , HIV Infections/drug therapy , HIV Infections/mortality , Lost to Follow-Up , Patient Compliance/statistics & numerical data , Patient Dropouts/statistics & numerical data , Severity of Illness Index , Adolescent , Adult , Anti-Retroviral Agents/therapeutic use , Attitude to Health , Drug Administration Schedule , Female , Follow-Up Studies , Humans , Male , Middle Aged , Patient Compliance/psychology , Patient Dropouts/psychology , Proportional Hazards Models , Risk Assessment , Risk Factors , Survival Analysis , Survival Rate , Tanzania/epidemiology , Young Adult
4.
Tanzan J Health Res ; 11(3): 136-43, 2009 Jul.
Article in English | MEDLINE | ID: mdl-20734710

ABSTRACT

The Tanzania HIV Care and Treatment Plan was launched in October 2004 aiming at providing 440,000 AIDS patients with antiretroviral drugs (ARVs) and track disease progression in 1.2 million HIV+ persons by the end of the 2008. This paper is intended to provide information to stake holders of the achievements and challenges of the HIV Care and Treatment Plan since its inception in 2004. Facility patient reports are aggregated at district and then regional level before being sent to the national level where they are aggregated to form a national report. By December 2007, 210 health facilities were offering HIV care and treatment services in Tanzania. About 123,147 (5%) of the 2,636,785 estimated people living with HIV and AIDS were enrolled, and 71,439 (13.6%) of the estimated 527,357 AIDS cases commenced ART. More females than males started ART, F:M ratio being 3:2. Most (49%) patients were started ART due to low CD4 counts (< 200). About 6,618 patients had their initial ARV regimen changed due to starting anti-TB treatment 679 (10%), peripheral neuropathy 812 (12%), skin rash 378 (6%), and stock out 247 (4%) or other reasons (18%), while 2,653 (42%) had no reason recorded. The proportion of patients still alive and on ART at 6, 12 and 24 months after initiation of treatment was 60%, 60%, and 50%, respectively, while those collecting ARVs on schedule was 34%, 25% and 10% respectively. About 3,084 patients developed TB after starting ART, of whom 1,557 (approximately 50%) patients during the first three months of treatment. During the three years (2004-2007) of HIV care and treatment services in Tanzania, there has been an increase in the number of CTC facilities, geographical coverage of services, the number of enrolled patients and those on ART. However, the set target for ART services has not been achieved and there are significant geographical variations in these achievements, which do not correspond with either population density or disease burden. Efforts should be made to i) ensure equitable accessibility when scaling up ART services in Tanzania, ii) improve the recording and reporting system and iii) armonize the activities of various stakeholders.


Subject(s)
Anti-Retroviral Agents/therapeutic use , HIV Infections/drug therapy , Adolescent , Adult , Age Distribution , Cohort Studies , Female , Follow-Up Studies , HIV Infections/epidemiology , Health Services Accessibility , Humans , Male , Middle Aged , Patient Acceptance of Health Care , Sex Factors , Tanzania/epidemiology , Treatment Outcome , Young Adult
5.
Proc Natl Acad Sci U S A ; 98(20): 11497-502, 2001 Sep 25.
Article in English | MEDLINE | ID: mdl-11562492

ABSTRACT

Despite the widespread use of bacillus Calmette-Guérin vaccination, Mycobacterium tuberculosis infection remains globally the leading cause of death from a single infectious disease. The complicated and often protracted dynamics of infection and disease make clinical trials to test new tuberculosis vaccines extremely complex. Preclinical selection of only the most promising candidates is therefore essential. Because macaque monkeys develop a disease very similar to humans, they have potential to provide important information in addition to small animal models. To assess the relative merits of rhesus and cynomolgus monkeys as screens for tuberculosis vaccines, we compared the efficacy of bacillus Calmette-Guérin vaccination and the course of infection in both species. Unvaccinated rhesus and cynomolgus monkeys both developed progressive disease with high levels of C-reactive protein, M. tuberculosis-specific IgG, and extensive pathology including cavitation and caseous necrosis. Bacillus Calmette-Guérin vaccination protected cynomolgus almost completely toward the development of pathology, reflected in a striking 2-log reduction in viable bacteria in the lungs compared with nonvaccinated animals. Rhesus, on the other hand, were not protected efficiently by the bacillus Calmette-Guérin. The vaccinated animals developed substantial pathology and had negligible reductions of colony-forming units in the lungs. Comparative studies in these closely related species are likely to provide insight into mechanisms involved in protection against tuberculosis.


Subject(s)
BCG Vaccine , Disease Models, Animal , Tuberculosis/prevention & control , Animals , Antibodies, Bacterial/blood , Antibodies, Bacterial/immunology , BCG Vaccine/administration & dosage , BCG Vaccine/immunology , C-Reactive Protein/metabolism , Cells, Cultured , Drug Evaluation, Preclinical/methods , Leukocytes, Mononuclear/immunology , Macaca fascicularis/immunology , Macaca mulatta/immunology , Male , Mycobacterium tuberculosis/immunology , Species Specificity , Tuberculosis/immunology , Tuberculosis/pathology , Tuberculosis/veterinary
6.
Appl Environ Microbiol ; 63(12): 4638-44, 1997 Dec.
Article in English | MEDLINE | ID: mdl-9406381

ABSTRACT

We report the cloning and characterization of a gene encoding a ferulic acid esterase, faeA, from Aspergillus niger and Aspergillus tubingensis. The A. niger and A. tubingensis genes have a high degree of sequence identity and contain one conserved intron. The gene product, FAEA, was overexpressed in wild-type A. tubingensis and a protease-deficient A. niger mutant. Overexpression of both genes in wild-type A. tubingensis and an A. niger protease-deficient mutant showed that the A. tubingensis gene product is more sensitive to degradation than the equivalent gene product from A. niger. FAEA from A. niger was identical to A. niger FAE-III (C. B. Faulds and G. Williamson, Microbiology 140:779-787, 1994), as assessed by molecular mass, pH and temperature optima, pI, N-terminal sequence, and activity on methyl ferulate. The faeA gene was induced by growth on wheat arabinoxylan and sugar beet pectin, and its gene product (FAEA) released ferulic acid from wheat arabinoxylan. The rate of release was enhanced by the presence of a xylanase. FAEA also hydrolyzed smaller amounts of ferulic acid from sugar beet pectin, but the rate was hardly affected by addition of an endo-pectin lyase.


Subject(s)
Aspergillus niger/enzymology , Aspergillus niger/genetics , Aspergillus/enzymology , Aspergillus/genetics , Carboxylic Ester Hydrolases/genetics , Carboxylic Ester Hydrolases/metabolism , Genes, Fungal , Amino Acid Sequence , Base Sequence , Biodegradation, Environmental , Cell Wall/metabolism , Cloning, Molecular , DNA Primers/genetics , DNA, Fungal/genetics , Molecular Sequence Data , Mutation , Polysaccharides/metabolism , Sequence Homology, Amino Acid , Species Specificity
7.
Trends Biotechnol ; 15(7): 256-63, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9237405

ABSTRACT

Homologous and heterologous protein production by filamentous fungi is often limited by the expression of proteases at high levels. By eliminating specific protease activities, protein production in Aspergillus niger can be improved considerably. Both classical mutagenesis and gene disruption techniques have yielded strains with reduced protease expression. Combinations of these mutations and disruptions result in a further reduction of protease activity. The coupling of efficient promoters to target genes allows their expression under conditions that repress the expression of several proteases, which further improves product yields. The strategies used have led to the development of a set of tester strains from which the appropriate genetic background for production can be selected.


Subject(s)
Aspergillus niger/genetics , Endopeptidases/genetics , Cloning, Molecular , Down-Regulation , Mutagenesis
8.
Eur J Biochem ; 247(2): 605-13, 1997 Jul 15.
Article in English | MEDLINE | ID: mdl-9266703

ABSTRACT

Three acid protease genes encoding two extracellular proteases (PEPA and PEPB) and one intracellular protease (PEPE) were disrupted in Aspergillus niger. Northern-blot analysis showed the absence of wild-type protease mRNAs in the disruptants while western-blot analysis proved the absence of the encoded proteases. Characterization of the residual proteolytic spectra in the disruptants indicated that the extracellular protease activity was reduced to 16% and 94% for the delta pepA and the delta pepB disruptants, repectively. In the delta pepE disruptant, the total intracellular proteolytic activity was reduced to 32%. Apart from the reduced intracellular pepstatin-inhibitable aspartyl protease activity, serine protease and serine carboxypeptidase activities were also significantly reduced in the delta pepE strain. This may indicate the presence of a cascade activation mechanism for several vacuolar proteases, triggered by the PEPE protein, similar to the situation in Saccharomyces cerevisiae. Disruption of a single protease gene had no effects on the transcription of other non-disrupted protease genes in A. niger. In supernatants of the disruptants, reduced degradation of a proteolytically very susceptible tester protein (PELB) was observed. By recombination, we also constructed delta pepA delta pepB, delta pepB delta pepE and delta pepA delta pepE double disruptants as well as a delta pepA delta pepB delta pepE triple disruptant, lacking all three acid protease activities. The in vitro residual PELB activity was the highest in the triple disruptant and the delta pepA delta pepB recombinant.


Subject(s)
Aspartic Acid Endopeptidases/metabolism , Aspergillus niger/enzymology , Endopeptidases/metabolism , Fungal Proteins , Aspartic Acid Endopeptidases/biosynthesis , Aspartic Acid Endopeptidases/genetics , Aspergillus niger/genetics , Blotting, Southern , Genetic Linkage , Kinetics , Molecular Sequence Data , Mutagenesis , Plasmids , Restriction Mapping
9.
Curr Genet ; 32(1): 73-81, 1997 Jul.
Article in English | MEDLINE | ID: mdl-9309173

ABSTRACT

An expression cassette has been transformed into six protease-deficient (prt) mutant strains of Aspergillus niger. Transformants were tested for improved production of the proteolytically susceptible PELB tester protein. In four complementation groups (prtA, B, D and F) distinct improvement of PELB yield was observed. These in vivo experiments in single prt mutants confirmed earlier in vitro PELB degradation data and demonstrated how the use of protease-deficient mutants can significantly improve protein production in A. niger. The strong effects of several prt alleles on the stability of the PELB tester protein have initiated a more detailed genetical and molecular characterization of the prt mutations. Mapping of the cloned protease genes pepA [I], B [II], C [IV], D [I], E [IV] and F [IV] indicated that none of the prt mutations represent alleles of the presently cloned protease (pep) genes from A. niger. Analysis of the expression of the pep genes in prt strains demonstrated that the strongly reduced protease activities observed in several prt mutants are not reflected by reduced transcription levels for a number of extracellular proteases. These results indicate that the mode of action of the prt genes constitute an interesting group of new genetic functions which severely affect protease production, and as such improve protein production, in A. niger.


Subject(s)
Aspergillus niger/enzymology , Endopeptidases/genetics , Polysaccharide-Lyases/metabolism , Aspergillus niger/genetics , Genes, Fungal/genetics , Genetic Linkage , Mutation , Polysaccharide-Lyases/biosynthesis , Polysaccharide-Lyases/genetics , Recombinant Proteins/biosynthesis , Recombinant Proteins/metabolism , Transformation, Genetic
10.
J Trop Pediatr ; 42(4): 220-7, 1996 08.
Article in English | MEDLINE | ID: mdl-8816034

ABSTRACT

Oral iron supplementation is often routinely given to children with malaria-associated anaemia, but its contribution to recovery is controversial. A randomized clinical trial, evaluating such routine, was carried out among 100 children, who had a haemoglobin of < or = 5 g/dl and a positive blood smear for malaria parasites. All children received malaria therapy (chloroquin + fansidar) and were randomly allocated to two groups, one receiving additional oral iron treatment, the other being the control. In the 12-week follow-up period the haemoglobin level and malaria indices were measured at 2, 4, 8, and 12 weeks. There was a 100 per cent compliance during the follow-up period. In each group 20 children (40 per cent) required a blood transfusion. In the remaining 60 children, after 2 weeks the haemoglobin had risen 3.7 g/dl in the ferrous-supplemented group compared to 3.5 g/dl in the non-ferrous group. Thereafter, the increase in haemoglobin in both groups was steady. At follow-up measurements, the groups did not differ for haemoglobin levels. The mean haemoglobin at 12 weeks was 9.2 and 9.0 g/dl, respectively. It was concluded that iron supplementation did not have any effect on the rate of parasitaemia and on parasite density during the 12 weeks. However, the iron-supplemented group had a significantly increased morbidity from other causes than malaria. It appears that iron does not have an effect on the recovery of haemoglobin level in children with malaria-associated anaemia. This study provides no evidence supporting routine iron supplementation to these children.


Subject(s)
Anemia/drug therapy , Anemia/parasitology , Ferrous Compounds/therapeutic use , Malaria/complications , Administration, Oral , Adolescent , Adult , Anemia/blood , Blood Transfusion , Child , Child, Preschool , Female , Follow-Up Studies , Hemoglobins/analysis , Humans , Infant , Infant, Newborn , Male , Tanzania
11.
Mol Gen Genet ; 251(5): 542-50, 1996 Jul 19.
Article in English | MEDLINE | ID: mdl-8709960

ABSTRACT

An Aspergillus niger strain has been constructed in which the pH-dependent regulatory gene, pacC, was disrupted. The pacC gene of A. niger, like that of A. nidulans, is involved in the regulation of acid phosphatase expression. Disruptants were identified by a reduction in acid phosphatase staining of colonies. Southern analysis demonstrated integration of the disruption plasmid at the pacC locus and Northern analysis showed that the disruption strain produced a truncated pacC mRNA of 2.2 kb (as compared to 2.8 kb in the wild type). The strain carrying the pacC disruption was used to assign the pacC gene to linkage group IV; this was confirmed by CHEF electrophoresis and Southern analysis. This strain further allowed us to determine which extracellular enzyme and transport systems are under the control of pacC in A. niger. Expression of the A. niger pacC wild-type gene and the truncated pacC gene showed that, in contrast to the auto-regulated wild-type expression, which was elevated only at alkaline pH, the truncated pacC gene was deregulated, as high-level expression occurred regardless of the pH of the culture medium. Analysis of the phosphatase spectrum by isoelectric focussing and enzyme activity staining both in the wild-type and the pacC disruptant showed that at least three acid phosphatases are regulated by the pacC. For the single alkaline phosphatase no pH regulation was observed.


Subject(s)
Acid Phosphatase/genetics , Aspergillus niger/enzymology , Fungal Proteins , Gene Expression Regulation, Fungal/physiology , Transcription Factors/genetics , Acid Phosphatase/metabolism , Amino Acid Sequence , Aspergillus niger/genetics , Chromosome Mapping , DNA, Fungal/analysis , Genes, Regulator/genetics , Hydrogen-Ion Concentration , Molecular Sequence Data , RNA, Fungal/genetics , RNA, Messenger/genetics , Transformation, Bacterial
12.
Curr Genet ; 29(5): 474-81, 1996 Apr.
Article in English | MEDLINE | ID: mdl-8625428

ABSTRACT

Transgenic filamentous fungi of the species Aspergillus niger, A. nidulans and A. awamori expressing and secreting Erwinia carotovora subsp. atroseptica pectate lyase 3 (PL3) were generated. Correct processing of the pre-enzyme was achieved using the A. niger pectin lyase A (PEL A) signal peptide. With the prepro-peptide of A. niger polygalacturonase II, secreted enzymes still possessed the 6- aa pro-sequence, indicating the importance of the conformation of the precursor protein for correct cleavage of the signal sequence. PL3 expression was markedly increased in media optimized for limited protease activity, and reached 0.4, 0.8 and 2.0 mg/l for expression in A. niger, A. awamori and A. nidulans, respectively. Glycans attached to the PL3 enzymes exhibited species-specific differences, and an increase of molecular mass coincided with reduced specific activities of the enzymes.


Subject(s)
Aspergillus/metabolism , Erwinia/enzymology , Gene Expression , Polysaccharide-Lyases/metabolism , Amino Acid Sequence , Aspergillus/genetics , Base Sequence , Erwinia/genetics , Molecular Sequence Data , Polysaccharide-Lyases/genetics , Protein Processing, Post-Translational , Protein Sorting Signals/genetics , Recombinant Fusion Proteins/metabolism , Species Specificity , Transformation, Genetic
13.
Mol Gen Genet ; 250(3): 367-74, 1996 Feb 25.
Article in English | MEDLINE | ID: mdl-8602152

ABSTRACT

A wide domain regulatory gene implicated in modulating gene expression in response to ambient pH has been cloned and sequenced from the industrially useful filamentous fungus Aspergillus niger. This gene, pacC, is able to restore a pacC+ phenotype to A. nidulans pacCc11 and pacCc14 mutants with respect to extent of conidiation, conidial pigment intensity and acid phosphatase regulation. The pacC gene of A. niger comprises three exons, encodes a three-zinc-finger protein of 677 amino acids, and shows pH-dependent regulation of expression: mRNA levels are elevated under alkaline conditions and considerably reduced under acidic conditions. The occurrence of PacC consensus binding targets within the sequences upstream of pacC may indicate autoregulation.


Subject(s)
Aspergillus niger/genetics , Genes, Fungal , Genes, Regulator , Transcription Factors/chemistry , Transcription Factors/genetics , Acid Phosphatase/metabolism , Amino Acid Sequence , Aspergillus niger/chemistry , Aspergillus niger/metabolism , Base Sequence , Blotting, Northern , Cloning, Molecular , Electrophoresis, Polyacrylamide Gel , Fungal Proteins/chemistry , Fungal Proteins/genetics , Gene Expression Regulation, Fungal/genetics , Hydrogen-Ion Concentration , Molecular Sequence Data , Phenotype , Protein Biosynthesis/genetics , Restriction Mapping , Sequence Alignment , Zinc Fingers/genetics
14.
Curr Genet ; 28(4): 299-308, 1995 Sep.
Article in English | MEDLINE | ID: mdl-8590475

ABSTRACT

Several mutants of Aspergillus niger, deficient in extracellular protease expression, have been isolated and characterized both genetically and biochemically. The mutant strains, obtained after in vivo UV-mutagenesis of conidiospores and selected by haloscreening on a new dual-substrate plate assay, belong to at least seven different complementation groups. These seven prt loci were assigned to linkage groups using master strains with marked chromosomes. One prt locus (prtC) could be assigned to linkage group I, three (prtB, prtE and prtG) to linkage group III, one (prtF) to linkage group V and the two remaining loci (prtA and prtD) to linkage group VIII. Extracellular proteolytic activities varied from 2 to 3% up to 80% of the protease activity of the parental strain. Assigning the different prt mutants to structural or regulatory genes is difficult since only one structural gene, pepA, has been mapped unambiguously on linkage group I but is not identical to prtC. All prt mutants except for prtC are likely to be regulatory mutants or else belong to a proteolytic cascade because residual activities showed that more proteolytic activities were affected simultaneously. Double mutants were constructed both by recombination and by a second round of mutagenesis. In both cases mutants with further reduced extracellular proteolytic activities were isolated. A sensitive in vitro degradation assay, based on the homologous pectin lyase B (PELB) protein to analyze proteolytic degradation in A. niger, was developed and used to show extremely reduced proteolytic PELB degradation in the culture media of some of these mutants.


Subject(s)
Aspergillus niger/genetics , Endopeptidases/genetics , Genes, Fungal , Genetic Complementation Test , Proteins/metabolism , Aspergillus niger/enzymology , Electrophoresis, Polyacrylamide Gel , Endopeptidases/metabolism , Fungal Proteins/genetics , Fungal Proteins/metabolism , Genetic Linkage/genetics , Hydrogen-Ion Concentration , Mutagenesis/genetics , Pepstatins/pharmacology , Phenotype , Protease Inhibitors , Recombination, Genetic/genetics , Serum Albumin, Bovine/metabolism , Tosyl Compounds/pharmacology
15.
Gene ; 151(1-2): 73-9, 1994 Dec 30.
Article in English | MEDLINE | ID: mdl-7828908

ABSTRACT

We have cloned a gene (pepF) encoding a serine carboxypeptidase, proteinase F (PEPF), from Aspergillus niger. The sequences were identified in a phage lambda genomic DNA library using a synthetic probe based on the N-terminal sequence of PEPF. Nucleotide sequence data from pepF genomic and cDNA clones reveals that it is composed of four exons of 199, 283, 227 and 881 bp, interrupted by three introns of 53, 69 and 59 bp. The sequence of pepF codes for a polypeptide of 530 amino acids (aa), of which the first 52 aa are not present in the mature PEPF. This region may represent a prepro sequence that is removed by proteolytic cleavage as a monobasic cleavage site (Lys52). Northern blot analysis of total cellular RNA extracted from A. niger cells indicates that pepF is transcribed as a single 1.8-kb mRNA, which is regulated by nitrogen and carbon repression, specific induction and the pH of the culture medium.


Subject(s)
Aspergillus niger/enzymology , Aspergillus niger/genetics , Genes, Fungal , Metalloendopeptidases/genetics , Serine Endopeptidases/genetics , Amino Acid Sequence , Bacterial Proteins , Bacteriophage lambda , Base Sequence , Blotting, Northern , Cloning, Molecular , Gene Expression , Gene Library , Hydrogen-Ion Concentration , Introns , Metalloendopeptidases/biosynthesis , Molecular Sequence Data , Oligonucleotide Probes , Open Reading Frames , Plants/genetics , Promoter Regions, Genetic , RNA, Messenger/biosynthesis , Recombinant Proteins/biosynthesis , Restriction Mapping , Sequence Homology, Amino Acid , Transcription, Genetic
16.
Biochem J ; 284 ( Pt 3): 861-7, 1992 Jun 15.
Article in English | MEDLINE | ID: mdl-1320381

ABSTRACT

The pentafunctional AROM protein of Aspergillus nidulans is encoded by the complex aromA locus and catalyses steps 2-6 in the synthesis of chorismate, the common precursor for the aromatic amino acids and p-aminobenzoic acid. DNA sequences encoding the 3-dehydroquinate synthase (DHQ synthase) and 3-dehydroquinase domains of the AROM protein have been amplified with the inclusion of a translational stop codon at the C-terminus by PCR technology. These amplified fragments of DNA have been subcloned into the prokaryotic expression vector pKK233-2 and expressed in Escherichia coli. As a result, the DHQ synthase domain is overproduced in E. coli, forming 30% of total cell protein, and can be purified to greater than 80% homogeneity by a simple two-step protocol. The 3-dehydroquinase domain is produced at a specific activity 8-fold greater than the corresponding activity encoded by the aromA gene in A. nidulans. The qutB gene of A. nidulans encoding quinate dehydrogenase has similarly been subjected to PCR amplification and expression in E. coli. The quinate dehydrogenase is not overproduced, but is active in E. coli as a shikimate dehydrogenase, as the presence of the qutB gene allows the growth of an E. coli mutant strain lacking shikimate dehydrogenase on minimal medium lacking aromatic-amino-acid supplementation.


Subject(s)
Alcohol Oxidoreductases/genetics , Aspergillus nidulans/enzymology , Escherichia coli/genetics , Hydro-Lyases/genetics , Lyases/genetics , Multienzyme Complexes/genetics , Phosphorus-Oxygen Lyases , Phosphotransferases (Alcohol Group Acceptor) , Phosphotransferases/genetics , Transferases , Alcohol Oxidoreductases/biosynthesis , Alcohol Oxidoreductases/isolation & purification , Aspergillus nidulans/genetics , Cloning, Molecular/methods , Genes, Fungal , Hydro-Lyases/biosynthesis , Hydro-Lyases/isolation & purification , Lyases/biosynthesis , Lyases/isolation & purification , Multienzyme Complexes/biosynthesis , Multienzyme Complexes/isolation & purification , Operon , Phosphotransferases/biosynthesis , Phosphotransferases/isolation & purification , Plasmids , Polymerase Chain Reaction/methods , Recombinant Proteins/biosynthesis , Recombinant Proteins/isolation & purification , Restriction Mapping
17.
Biochem J ; 284 ( Pt 1): 181-7, 1992 May 15.
Article in English | MEDLINE | ID: mdl-1318019

ABSTRACT

The qutC gene encoding dehydroshikimate dehydratase has been constitutively overexpressed in Aspergillus nidulans from a range of 1-30-fold over the normal wild-type level. This overexpression leads to impaired growth in minimal medium which can be alleviated by the addition of aromatic amino acids to the medium. Overexpression of the qutC gene in mutant strains lacking protocatechuic acid (PCA) oxygenase leads to the build up of PCA in the medium, which can be measured by a simple assay. Measuring the rate of production of PCA in strains overproducing dehydroshikimate dehydratase and correlating this with the level of overproduction and impaired ability to grow in minimal medium lacking aromatic amino acids leads to the conclusion that (a) the metabolites 3-dehydroquinate and dehydroshikimate leak from the AROM protein at a rate comparable with the extent of flux catalysed by the AROM protein, (b) the AROM protein has a low-level channelling function probably as a result of the close juxtaposition of five active sites and (c) this channelling function is only physiologically significant under non-optimal conditions of nutrient supply and oxygenation, when the organism is in situ in its natural environment.


Subject(s)
Phosphotransferases (Alcohol Group Acceptor) , Quinic Acid/metabolism , Shikimic Acid/metabolism , Transferases , Alcohol Oxidoreductases/metabolism , Amino Acids/metabolism , Aspergillus nidulans/genetics , Aspergillus nidulans/metabolism , Gene Expression/genetics , Genetic Variation/genetics , Hydro-Lyases/biosynthesis , Hydro-Lyases/genetics , Hydro-Lyases/metabolism , Hydroxybenzoates/metabolism , Lyases/metabolism , Multienzyme Complexes/metabolism , Phosphotransferases/metabolism , Plasmids
18.
Trop Geogr Med ; 44(1-2): 113-8, 1992 Jan.
Article in English | MEDLINE | ID: mdl-1496702

ABSTRACT

Between January 1983 and January 1988 a total of 146 children started tuberculosis (TB) treatment in Turiani Hospital, Tanzania. During the treatment period 16 children died and another 16 were transferred out. From the remaining 114 children, 84 could be traced and were visited at home. Out of this group 85% were found to be in good clinical condition, whereas 7% had a moderate condition and 1% were seriously ill. Tuberculin sensitivity testing has been carried out in 53 children from the follow-up group. The indications for treatment and the results of the follow-up study are discussed.


Subject(s)
Antitubercular Agents/therapeutic use , Clinical Protocols/standards , Tuberculosis/drug therapy , Adolescent , Age Factors , Antitubercular Agents/administration & dosage , Child , Child, Preschool , Decision Trees , Follow-Up Studies , Hospitals, Rural , Humans , Infant , Infant, Newborn , Prevalence , Tanzania/epidemiology , Treatment Outcome , Tuberculosis/diagnosis , Tuberculosis/epidemiology
19.
East Afr Med J ; 68(9): 686-93, 1991 Sep.
Article in English | MEDLINE | ID: mdl-1724647

ABSTRACT

Between January 1983 and January 1988, a total of 146 children started TB treatment in Turiani Hospital, Tanzania. During the treatment period 16 children died and another 16 have been transferred out. From the remaining 114, 84 could be traced and were visited at home. Out of this group, 85% were found to be in good clinical condition, and 1% was in bad shape. Death had occurred in 7% after finishing their treatment. Medical records of all children were analysed. Tuberculin sensitivity testing has been carried out in 53 children from the follow-up group. The indications for treatment and the results of the follow-up study are discussed.


PIP: Physicians began tuberculosis (TB) treatment on 146 children at Turiani Hospital in the Morogoro North district, Tanzania between January 1983-January 1988. 46% were 2 years old and 9% were 12 years old. Treatment consisted of daily doses of 20 mg/kg streptomycin and 15 mg/kg thiazina for the 8 week hospital stay followed by the same dose of thiazina for 10 months. Some cases also received rifampicin and pyrazinamide. They administered tubercullin sensitivity tests to 53 of the 84 children who could be traced and visited. Researchers followed the TB case to evaluate indications for and the results of TB treatment in children. The physicians began treatment in some case even though the cases did not exhibit clear symptoms of TB. 74% of the patients whose BCG status was recorded had earlier received a BCG vaccination. Research showed that BCG vaccination protects against 2 severe forms of TB, meningeal and milliary, both of which were not present in this population. At the end of 5 years, 7% (6) of the patients died and only 1% (1) was in poor condition. 85% of all follow up patients were in good condition and well nourished. Even most of the patients who ended treatment rather early after leaving the hospital (74%) were well. In fact, no significant difference in the condition between defaulters and patients who completed treatment existed. This showed that a shorter duration of treatment may be as effective as 10 months of treatment. Only 34% of tested children reacted to the tuberculin sensitivity test which could mean that physicians overtreated around 60% of the patients. 25% of the children who had a negative reaction had abcesses while none of those with a positive reaction had abcesses. In conclusion, physicians should administer a tuberculin sensitivity test at the end of the 8 weeks of treatment to prevent overtreatment.


Subject(s)
Isoniazid/therapeutic use , Streptomycin/therapeutic use , Thioacetazone/therapeutic use , Tuberculosis/drug therapy , Adolescent , Child , Child, Preschool , Cohort Studies , Drug Combinations , Drug Therapy, Combination , Hospitalization , Humans , Infant , Isoniazid/administration & dosage , Streptomycin/administration & dosage , Survival Rate , Tanzania/epidemiology , Thioacetazone/administration & dosage , Treatment Outcome , Tuberculosis/diagnosis , Tuberculosis/epidemiology
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