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1.
Genome Res ; 17(11): 1647-56, 2007 Nov.
Article in English | MEDLINE | ID: mdl-17895425

ABSTRACT

The nosocomial human pathogen Moraxella catarrhalis is one the most important agents of human respiratory tract infections. This species is composed of two distinct lineages, one of only moderate virulence, the so-called serosensitive subpopulation, and a second, the seroresistant one, which is enriched among strains that harbor two major virulence traits: complement resistance and adherence to epithelial cells. Using a suite of population genetics tools, we show that the seroresistant lineage is also characterized by higher homologous recombination and mutation rates at housekeeping genes relative to its less pathogenic counterpart. Thus, sex and virulence have evolved in tandem in M. catarrhalis. Moreover, phylogenetic and Bayesian analyses that take into account recombination between the two clades show that the ancestral group was avirulent, is possibly 70 million years old, and must have infected mammals prior to the evolution of humans, which occurred later. The younger seroresistant isolates went through an important population expansion some 5 million years ago, coincident with the hominid expansion. This rise and spread was possibly coupled with a host shift and the acquisition of virulence genes.


Subject(s)
Moraxella catarrhalis/pathogenicity , Moraxellaceae Infections/microbiology , Drug Resistance, Bacterial/genetics , Evolution, Molecular , Genetics, Population , Humans , Models, Biological , Moraxella catarrhalis/genetics , Moraxellaceae Infections/epidemiology , Phylogeny , Polymorphism, Genetic , Recombination, Genetic , Respiratory Tract Infections/microbiology , Selection, Genetic
2.
FEMS Immunol Med Microbiol ; 38(2): 153-8, 2003 Sep 22.
Article in English | MEDLINE | ID: mdl-13129649

ABSTRACT

Coagulase negative staphylococci (CoNS) are a main cause of catheter related infections (CRI). Earlier studies (1994-1996) revealed a high incidence of CRI (6 per 1000 catheter days) among neutropenic hemato-oncologic patients in the Erasmus MC Hematology Department (Rotterdam, The Netherlands). This was mainly explained by expansion of two methicillin resistant Staphylococcus epidermidis (MRSE) clones (Nouwen et al., J. Clin. Microbiol. 36 (1998) 2696-2702). In a new, 16-bed unit in the same institution, we investigated the effect of strict clinical isolation measures on the incidence of CRI. During two 6-month screening periods (period I: April 1998-December 1998 and period II: April 1999-October 1999) all patients receiving a central venous catheter were prospectively monitored for the development of CRI. During period I every visitor of the cubicles had to wear hair caps, masks, gowns and gloves. During period II these procedures were abolished, but hands were cleansed using alcohol and masks were worn during both periods in case of coughing and sneezing. All CoNS strains isolated from blood cultures were genetically classifies by pulsed field gel electrophoresis (PFGE). The incidence of CRI during period I was 13.0 per 1000 catheter days, in comparison to 9.6 in period II (P=0.84). During this latter period, 19 CRI were diagnosed, 14 catheter related bacteremia episodes (CRB) and five local infections. Seventy-two percent (n=9) of CRB were due to a CoNS. The mean catheter survival until appearance of a CRI increased from 43 days during period I to 78 days in period II (P=0.39). The mean catheter survival until infection related removal was increased from 43 days to 133 days (P=0.12). During period I less experienced intervention radiologists introduced the catheters, which may have limited the efficacy of the strict hygiene measures. Thus, abolishing strict isolation precautions had no negative effect on the incidence of CRI. After genotyping of 38 MRSE strains isolated from blood and central venous catheter cultures of 12 patients in period II, eight PFGE types were found. Three types were found in more than one patient, but based on epidemiological data patient-to-patient spread could not be proven. No genotypic identity between patient and personnel CoNS isolates was shown and the two major clonal types that were present between 1994 and 1996 were not encountered. However, from December 1998 onwards new MRSE clones could be identified (types E and J). In conclusion, despite a constant rate of CRI and implementation of optimal patient care, clonal spread of MRSE strains was not prevented by strict hygiene measures.


Subject(s)
Catheterization, Central Venous/adverse effects , Catheters, Indwelling/microbiology , Infection Control/methods , Staphylococcal Infections/epidemiology , Staphylococcus/genetics , Catheters, Indwelling/adverse effects , Coagulase/metabolism , Culture Media , Electrophoresis, Gel, Pulsed-Field , Equipment Contamination , Genotype , Hematologic Neoplasms/complications , Humans , Incidence , Microbial Sensitivity Tests , Neutropenia/complications , Staphylococcal Infections/microbiology , Staphylococcus/classification , Staphylococcus/enzymology
3.
Eur J Pediatr ; 162(7-8): 514-516, 2003 Jul.
Article in English | MEDLINE | ID: mdl-12740695

ABSTRACT

UNLABELLED: The role of Mycoplasma hominisas a causative agent for neonatal sepsis and meningitis is still unclear. Meningitis secondary to M. hominisis well-described in the literature; however, M. hominiscan also be isolated from cerebrospinal fluid (CSF) obtained from infants without signs of meningitis. We present a case of a full-term infant with meningo-encephalitis with seizures, epileptic activity on the EEG, inflammation of brain tissue on a CT scan, and cloudy CSF containing elevated cell counts, decreased glucose levels and elevated protein levels. M. hominiswas identified from the CSF by culture and by polymerase chain reaction (PCR) as the only possible causative agent. Furthermore, while empiric antibiotic and antiviral treatment for neonatal sepsis had failed, the meningo-encephalitis promptly responded upon antibiotic treatment with ciprofloxacin (20 mg/kg per day i.v.), to which M. hominisis susceptible. CONCLUSION: A meningo-encephalitis developed due to infection with M. hominisin a full-term infant, from which he recovered rapidly after start of treatment with ciprofloxacin.


Subject(s)
Anti-Infective Agents/therapeutic use , Ciprofloxacin/therapeutic use , Meningoencephalitis/drug therapy , Mycoplasma Infections/drug therapy , Humans , Infant, Newborn , Male , Meningoencephalitis/microbiology , Mycoplasma hominis
4.
Br J Haematol ; 121(3): 448-57, 2003 May.
Article in English | MEDLINE | ID: mdl-12716367

ABSTRACT

We determined the value of galactomannan (GM) detection in computerized tomography (CT)-based broncho-alveolar lavage (BAL) fluid and serum for the diagnosis of invasive pulmonary aspergillosis (IPA) in haemato-oncological patients with neutropenia. CT of the thorax and BAL were performed systematically at predefined clinical indications. GM was determined by sandwich enzyme-linked immunosorbent assay; the clinicians were unaware of the results. Of 160 patients, 17 patients (10.6%) presented with proven, probable or suspected IPA. The sensitivity, specificity, positive predictive value (PPV) and negative predictive value (NPV) of GM detection in CT-based BAL fluid were all 100%. For GM detection in serially sampled serum, the sensitivity was 47%, the specificity 93%, the PPV 73% and the NPV 82%. A non-blinded follow-up study was performed to validate these results. In this study, 22 of 198 patients (11.1%) presented with IPA, and the sensitivity, specificity, PPV and NPV of GM detection in CT-based BAL fluid were 85%, 100%, 100% and 88% respectively. None of BAL fluids obtained after antifungal treatment of 3 d or more were positive. These results indicate that, when CT is used systematically and at an early stage, GM detection in CT-based BAL fluid has a high PPV for diagnosing IPA early in untreated patients.


Subject(s)
Aspergillosis/diagnosis , Bronchoalveolar Lavage Fluid/chemistry , Hematologic Neoplasms/microbiology , Lung Diseases, Fungal/diagnosis , Mannans/analysis , Adult , Aspergillosis/diagnostic imaging , Biomarkers/analysis , Biomarkers/blood , Bronchoalveolar Lavage Fluid/microbiology , Follow-Up Studies , Galactose/analogs & derivatives , Hematologic Neoplasms/diagnostic imaging , Humans , Lung Diseases, Fungal/diagnostic imaging , Mannans/blood , Predictive Value of Tests , Prospective Studies , Risk , Sensitivity and Specificity , Tomography, X-Ray Computed
5.
Vaccine ; 21(11-12): 1118-24, 2003 Mar 07.
Article in English | MEDLINE | ID: mdl-12559789

ABSTRACT

Intra-genomic variation in the uspA1 and uspA2 genes of Moraxella catarrhalis was studied using pulsed field gel electrophoresis (PFGE) and polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis. From a set of 91 M. catarrhalis isolates, 19 pairs of PFGE identical isolates were found. Five pairs originated from otitis non-prone children, 11 pairs from otitis prone children and for 3 pairs, one of the pair originated from an otitis prone and the other from an otitis non-prone child. No particular M. catarrhalis isolate was associated with either the otitis prone or non-prone children. One of these 19 pairs of isolates was found to exhibit both uspA1 and uspA2 intra-genomic variation, whilst another pair exhibited uspA2 intra-genomic variation only. Sequence data obtained from these variants showed that PCR-RFLP pattern differences reflected actual changes in predicted amino acid composition and that minor amino acid changes in a 23 base pair "NINNIY" repeat region (a conserved UspA1 and UspA2 binding site for the neutralising antibody mAb17C7) occurred. Variation in the uspA2 5' non-coding "AGAT" repeat region was also observed. These results may have implications for future M. catarrhalis vaccines comprising UspA1 or UspA2 components.


Subject(s)
Antigens, Bacterial/genetics , Bacterial Outer Membrane Proteins/genetics , Genome, Bacterial , Moraxella catarrhalis/genetics , Otitis Media/microbiology , Amino Acid Sequence , Antigens, Bacterial/immunology , Bacterial Outer Membrane Proteins/immunology , Child, Preschool , Complement System Proteins/immunology , DNA, Bacterial/genetics , Electrophoresis, Gel, Pulsed-Field , Epitopes/genetics , Epitopes/immunology , Female , Genetic Variation , Humans , Infant , Male , Molecular Sequence Data , Moraxella catarrhalis/classification , Moraxella catarrhalis/isolation & purification , Otitis Media/prevention & control , Phylogeny , Polymerase Chain Reaction , Polymorphism, Genetic , Polymorphism, Restriction Fragment Length , Recurrence , Repetitive Sequences, Nucleic Acid , Sequence Alignment , Sequence Analysis, DNA , Sequence Homology, Amino Acid
6.
J Infect Dis ; 186(12): 1852-6, 2002 Dec 15.
Article in English | MEDLINE | ID: mdl-12447775

ABSTRACT

Thirteen fluoroquinolone-resistant Escherichia coli (FQREC) isolates from hospitalized patients in the Netherlands were found to represent predominantly (low-virulence) phylogenetic groups A and B1 and to lack extraintestinal virulence traits. These FQREC resemble animal-source E. coli and presumably pose little threat to noncompromised hosts. Similar analysis of other FQREC is needed.


Subject(s)
Anti-Infective Agents/pharmacology , Escherichia coli Infections/epidemiology , Escherichia coli/drug effects , DNA, Bacterial/genetics , Drug Resistance, Bacterial , Escherichia coli/classification , Escherichia coli/pathogenicity , Escherichia coli Infections/microbiology , Fluoroquinolones , Genotype , Hospitals , Humans , Netherlands/epidemiology , Phylogeny , Virulence/genetics
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