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Genome Biol ; 25(1): 81, 2024 03 29.
Article in English | MEDLINE | ID: mdl-38553769

ABSTRACT

The use of single-cell technologies for clinical applications requires disconnecting sampling from downstream processing steps. Early sample preservation can further increase robustness and reproducibility by avoiding artifacts introduced during specimen handling. We present FixNCut, a methodology for the reversible fixation of tissue followed by dissociation that overcomes current limitations. We applied FixNCut to human and mouse tissues to demonstrate the preservation of RNA integrity, sequencing library complexity, and cellular composition, while diminishing stress-related artifacts. Besides single-cell RNA sequencing, FixNCut is compatible with multiple single-cell and spatial technologies, making it a versatile tool for robust and flexible study designs.


Subject(s)
Genomics , RNA , Humans , Animals , Mice , Tissue Fixation/methods , Reproducibility of Results , Sequence Analysis, RNA/methods , RNA/genetics , Genomics/methods , Single-Cell Analysis/methods
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